jgi.p|Nanoce1779_2|590117, mRNA_5726 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590117
Unique Name	mRNA_5726
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2472
Alignment location	scaffold_11:428128..430599 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590203
Track	FilteredModels2
ProteinId	590117

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:428128..430599 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590117	gene_5726	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590117	mRNA_5726-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5726	CDS_5726	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:428128..430599-
coding sequence from alignment at scaffold_11:428128..430599-

mRNA sequence

>mRNA_5726 ID=mRNA_5726|Name=jgi.p|Nanoce1779_2|590117|organism=Nannochloropsis oceanica|type=mRNA|length=2472bp
GGGCGACAAGGAGGAGGAGAAAAAGGAGGAAAGGGAACAGGAGGAACAGG
AGGAGAAGGAGGAGGAGAGGAAAGATGAAGATGAAGAGGAGGAGGGGGGG
GAAGAGGAAGAAGGGAAAACGCCCATAAGCACTGTGTCTTCGGTGCTGGT
GGGCAGCCTGCCCATGCCTAAGATCAAGAAGCCGACGAAAAGCACCAACA
AGGCGAAGGCGGCGGCGGCCACCACCCGGAGGATCATCGAAGAAATTCGA
GAGCTCACACCCGGCTACCCGAGCTTGCCCTATCAGACGCTAACAAATGT
GCTGGAAGCGGTAGAGGCCGTGACGGGACGGCTGGAGATCACCGACATAG
TACGGGAGCTGTTCGCGAAGACCATCGAGTGCTGCCCCACCGACTTACCC
GTGCTCCTGTACCTGCTCTGTGGTAAGATCGGGCCGGCATACGAGGCTGT
GGAGCTCGGCATCGGGGATAAGAACATCGTGGACGCGCTGGTCAAGGGCC
TGGGATGCTCTTCGGCCTCGCTGAACCAGAAGGGGGAGGGGGCGGACGGA
GACTTAGGCACAGCCGCGCAGAGAGCCAAAGGTAGCCAGCGCACGCTGAA
CTTCGGTGCCAAGCCGAATCCACTGACTAGCCAGCAGGTACTACAGGGTT
TTCGAGACGTGGCGGCATGCGCGGGCGGCAAGTCCATGACGCAAAAGATC
GACATCATCCGCAAGCTCCTCATGCGCTGCGCCAAGGAGGGGGCCGAGGT
GAAGTTTCTGGTGCGCGGTCTCCAGACCAAGCTCCGCTGCCGTCTGGCCG
AGCCCACAGTGCTCACGGCACTCTCGCAGGCCTTCGTGCAGACTCCTCCT
GTGCTTAATGCTGTCGTGGAGGAAGAGATGAGCTCCTTGGCAGAGGCGAC
AGCGCTGGCGCACGGAGTGGCTGTGCTGTGCAATCCGAAGGCGGGCCGCG
CTGAGAAGTGGGAGGCGGCCGAGGCGGTGGTAAAGCAGGCATACAGTGAG
TGTCCCAATTACGACCGGCTGGTAGCTGCCCTGCTCTCGGCACCGCTACC
CCATGTCTTGCAGACCTGCCGGCTGGCGCCCGGCGTGCCCGTCAAGCCCA
TGCTAGCCAAGGCTCAGGACTCGTTCCAGGATGTACTGCGGCGCATGCAG
GGCTTGCATTTCACCATGGAATACAAGTACGACGGGGAGCGGGCACAGGT
CCACCTCCTGCCTGACGGTTCATTTAAGATCTTCTCCCGCAACTCCGAGG
ATACCACCACGAAGTATCCAGACCTGCTGGCCGTGCTTCCTCAGGCTCTA
CGGGCCGGCACCACCTCCTTCGTCATCGACGCTGAGGCCGTGGCCATCGA
CCCTGACTCAGGCAAGCTGCTACCCTTCCAGATCCTGAGCACACGCAAGC
GTAAGAACGAGAAGGTTGAAGATGTGAAGGTGCAGGTCGTGCTCTACGCC
TTCGACATCCTCTTTCTCAATGACCGGCCCGTACTCCAGGAGCCCCTCTT
GCGGCGTCGCGCCCTCCTTCGCGATGCCTTTGTCCCCGTGCCCGGCAAAT
TCGACTTCGCCATCTCGCTGGACCATCACGAGAACGGGGATACATCGGCC
ATCGAGGCCTTCCTGGACGAGGCCGTGGCCGGCAACTGCGAGGGGCTCAT
GATCAAGACGCTAGAGCAAAATGCCACCTACGAGCCCACAAAGCGCTCCC
TAAACTGGCTTAAGCTCAAAAAGGACTACCTCTCTGGCGGGGCAAGTGGC
GGTGGGCGGGGACCGGCTGATTCTCTTGACCTGGTGGTACTGGGCGGCAA
CCACGGGCAAGGCAAGCGTGTGGGCTGGTATGGGGCCTTCCTGCTGGCCT
GCTACGATTCAGAGACGGAGGAGTACCAGTCAGTCTGCAAGATCGGCACC
GGCTTCTCGGAGGAGTTTCTGGCCGCCATGAAACCCCAGCTGGACGTCCT
CATCCTGCCCGGGGGCAAGCCCGGCTACTACAACACCAGCCTGGACTGCG
ACGTTTGGTTCGAGCCCAAAATCGTCTGGGAAGTGCGAGCCGCGGACTTG
AGCGTATCGCCCGCGCACAAGGGTGCGCTGGATAAGGTGGAAAAGGGCAA
GGGGATCGCTCTCCGCTTTCCGCGTTTCATCCGTAACAGGGCCGACAAGG
CCCCAGAGGACGCGACCAGTGCGGAGCAGATCGCGGAGGCCTACCGCAGC
CAAGCCCTGGTGGAGGCCACTCTGACCAACGGGGGAGGTAAGGGCAAAGG
TGCACAGGACGAGGATGACGATTGGTGTATCTAAGCAAAGCTGACTAGAG
ACTGTGCGGAGTGCAAACGACACGGCGGAAACAAGAAGTGGAGGCACTGG
AAGTAAGAAGAGGACAAAGTGTGGACATTAAAACGAATCGATATCGTGGA
TGACGGACGACAGGCATATTGCGAATAATACCAAGCCTCTAACAAAGTAA
ACAGGAGAACGATGGAGGCACA

protein sequence of jgi.p|Nanoce1779_2|590117

>mRNA_5726-protein ID=mRNA_5726-protein|Name=jgi.p|Nanoce1779_2|590117|organism=Nannochloropsis oceanica|type=polypeptide|length=707bp
MPKIKKPTKSTNKAKAAAATTRRIIEEIRELTPGYPSLPYQTLTNVLEAV
EAVTGRLEITDIVRELFAKTIECCPTDLPVLLYLLCGKIGPAYEAVELGI
GDKNIVDALVKGLGCSSASLNQKGEGADGDLGTAAQRAKGSQRTLNFGAK
PNPLTSQQVLQGFRDVAACAGGKSMTQKIDIIRKLLMRCAKEGAEVKFLV
RGLQTKLRCRLAEPTVLTALSQAFVQTPPVLNAVVEEEMSSLAEATALAH
GVAVLCNPKAGRAEKWEAAEAVVKQAYSECPNYDRLVAALLSAPLPHVLQ
TCRLAPGVPVKPMLAKAQDSFQDVLRRMQGLHFTMEYKYDGERAQVHLLP
DGSFKIFSRNSEDTTTKYPDLLAVLPQALRAGTTSFVIDAEAVAIDPDSG
KLLPFQILSTRKRKNEKVEDVKVQVVLYAFDILFLNDRPVLQEPLLRRRA
LLRDAFVPVPGKFDFAISLDHHENGDTSAIEAFLDEAVAGNCEGLMIKTL
EQNATYEPTKRSLNWLKLKKDYLSGGASGGGRGPADSLDLVVLGGNHGQG
KRVGWYGAFLLACYDSETEEYQSVCKIGTGFSEEFLAAMKPQLDVLILPG
GKPGYYNTSLDCDVWFEPKIVWEVRAADLSVSPAHKGALDKVEKGKGIAL
RFPRFIRNRADKAPEDATSAEQIAEAYRSQALVEATLTNGGGKGKGAQDE
DDDWCI*

mRNA from alignment at scaffold_11:428128..430599-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5726 ID=mRNA_5726|Name=jgi.p|Nanoce1779_2|590117|organism=Nannochloropsis oceanica|type=mRNA|length=2472bp|location=Sequence derived from alignment at scaffold_11:428128..430599- (Nannochloropsis oceanica)
GGGCGACAAGGAGGAGGAGAAAAAGGAGGAAAGGGAACAGGAGGAACAGG
AGGAGAAGGAGGAGGAGAGGAAAGATGAAGATGAAGAGGAGGAGGGGGGG
GAAGAGGAAGAAGGGAAAACGCCCATAAGCACTGTGTCTTCGGTGCTGGT
GGGCAGCCTGCCCATGCCTAAGATCAAGAAGCCGACGAAAAGCACCAACA
AGGCGAAGGCGGCGGCGGCCACCACCCGGAGGATCATCGAAGAAATTCGA
GAGCTCACACCCGGCTACCCGAGCTTGCCCTATCAGACGCTAACAAATGT
GCTGGAAGCGGTAGAGGCCGTGACGGGACGGCTGGAGATCACCGACATAG
TACGGGAGCTGTTCGCGAAGACCATCGAGTGCTGCCCCACCGACTTACCC
GTGCTCCTGTACCTGCTCTGTGGTAAGATCGGGCCGGCATACGAGGCTGT
GGAGCTCGGCATCGGGGATAAGAACATCGTGGACGCGCTGGTCAAGGGCC
TGGGATGCTCTTCGGCCTCGCTGAACCAGAAGGGGGAGGGGGCGGACGGA
GACTTAGGCACAGCCGCGCAGAGAGCCAAAGGTAGCCAGCGCACGCTGAA
CTTCGGTGCCAAGCCGAATCCACTGACTAGCCAGCAGGTACTACAGGGTT
TTCGAGACGTGGCGGCATGCGCGGGCGGCAAGTCCATGACGCAAAAGATC
GACATCATCCGCAAGCTCCTCATGCGCTGCGCCAAGGAGGGGGCCGAGGT
GAAGTTTCTGGTGCGCGGTCTCCAGACCAAGCTCCGCTGCCGTCTGGCCG
AGCCCACAGTGCTCACGGCACTCTCGCAGGCCTTCGTGCAGACTCCTCCT
GTGCTTAATGCTGTCGTGGAGGAAGAGATGAGCTCCTTGGCAGAGGCGAC
AGCGCTGGCGCACGGAGTGGCTGTGCTGTGCAATCCGAAGGCGGGCCGCG
CTGAGAAGTGGGAGGCGGCCGAGGCGGTGGTAAAGCAGGCATACAGTGAG
TGTCCCAATTACGACCGGCTGGTAGCTGCCCTGCTCTCGGCACCGCTACC
CCATGTCTTGCAGACCTGCCGGCTGGCGCCCGGCGTGCCCGTCAAGCCCA
TGCTAGCCAAGGCTCAGGACTCGTTCCAGGATGTACTGCGGCGCATGCAG
GGCTTGCATTTCACCATGGAATACAAGTACGACGGGGAGCGGGCACAGGT
CCACCTCCTGCCTGACGGTTCATTTAAGATCTTCTCCCGCAACTCCGAGG
ATACCACCACGAAGTATCCAGACCTGCTGGCCGTGCTTCCTCAGGCTCTA
CGGGCCGGCACCACCTCCTTCGTCATCGACGCTGAGGCCGTGGCCATCGA
CCCTGACTCAGGCAAGCTGCTACCCTTCCAGATCCTGAGCACACGCAAGC
GTAAGAACGAGAAGGTTGAAGATGTGAAGGTGCAGGTCGTGCTCTACGCC
TTCGACATCCTCTTTCTCAATGACCGGCCCGTACTCCAGGAGCCCCTCTT
GCGGCGTCGCGCCCTCCTTCGCGATGCCTTTGTCCCCGTGCCCGGCAAAT
TCGACTTCGCCATCTCGCTGGACCATCACGAGAACGGGGATACATCGGCC
ATCGAGGCCTTCCTGGACGAGGCCGTGGCCGGCAACTGCGAGGGGCTCAT
GATCAAGACGCTAGAGCAAAATGCCACCTACGAGCCCACAAAGCGCTCCC
TAAACTGGCTTAAGCTCAAAAAGGACTACCTCTCTGGCGGGGCAAGTGGC
GGTGGGCGGGGACCGGCTGATTCTCTTGACCTGGTGGTACTGGGCGGCAA
CCACGGGCAAGGCAAGCGTGTGGGCTGGTATGGGGCCTTCCTGCTGGCCT
GCTACGATTCAGAGACGGAGGAGTACCAGTCAGTCTGCAAGATCGGCACC
GGCTTCTCGGAGGAGTTTCTGGCCGCCATGAAACCCCAGCTGGACGTCCT
CATCCTGCCCGGGGGCAAGCCCGGCTACTACAACACCAGCCTGGACTGCG
ACGTTTGGTTCGAGCCCAAAATCGTCTGGGAAGTGCGAGCCGCGGACTTG
AGCGTATCGCCCGCGCACAAGGGTGCGCTGGATAAGGTGGAAAAGGGCAA
GGGGATCGCTCTCCGCTTTCCGCGTTTCATCCGTAACAGGGCCGACAAGG
CCCCAGAGGACGCGACCAGTGCGGAGCAGATCGCGGAGGCCTACCGCAGC
CAAGCCCTGGTGGAGGCCACTCTGACCAACGGGGGAGGTAAGGGCAAAGG
TGCACAGGACGAGGATGACGATTGGTGTATCTAAGCAAAGCTGACTAGAG
ACTGTGCGGAGTGCAAACGACACGGCGGAAACAAGAAGTGGAGGCACTGG
AAGTAAGAAGAGGACAAAGTGTGGACATTAAAACGAATCGATATCGTGGA
TGACGGACGACAGGCATATTGCGAATAATACCAAGCCTCTAACAAAGTAA
ACAGGAGAACGATGGAGGCACA

Coding sequence (CDS) from alignment at scaffold_11:428128..430599-

>mRNA_5726 ID=mRNA_5726|Name=jgi.p|Nanoce1779_2|590117|organism=Nannochloropsis oceanica|type=CDS|length=2121bp|location=Sequence derived from alignment at scaffold_11:428128..430599- (Nannochloropsis oceanica)
ATGCCTAAGATCAAGAAGCCGACGAAAAGCACCAACAAGGCGAAGGCGGC
GGCGGCCACCACCCGGAGGATCATCGAAGAAATTCGAGAGCTCACACCCG
GCTACCCGAGCTTGCCCTATCAGACGCTAACAAATGTGCTGGAAGCGGTA
GAGGCCGTGACGGGACGGCTGGAGATCACCGACATAGTACGGGAGCTGTT
CGCGAAGACCATCGAGTGCTGCCCCACCGACTTACCCGTGCTCCTGTACC
TGCTCTGTGGTAAGATCGGGCCGGCATACGAGGCTGTGGAGCTCGGCATC
GGGGATAAGAACATCGTGGACGCGCTGGTCAAGGGCCTGGGATGCTCTTC
GGCCTCGCTGAACCAGAAGGGGGAGGGGGCGGACGGAGACTTAGGCACAG
CCGCGCAGAGAGCCAAAGGTAGCCAGCGCACGCTGAACTTCGGTGCCAAG
CCGAATCCACTGACTAGCCAGCAGGTACTACAGGGTTTTCGAGACGTGGC
GGCATGCGCGGGCGGCAAGTCCATGACGCAAAAGATCGACATCATCCGCA
AGCTCCTCATGCGCTGCGCCAAGGAGGGGGCCGAGGTGAAGTTTCTGGTG
CGCGGTCTCCAGACCAAGCTCCGCTGCCGTCTGGCCGAGCCCACAGTGCT
CACGGCACTCTCGCAGGCCTTCGTGCAGACTCCTCCTGTGCTTAATGCTG
TCGTGGAGGAAGAGATGAGCTCCTTGGCAGAGGCGACAGCGCTGGCGCAC
GGAGTGGCTGTGCTGTGCAATCCGAAGGCGGGCCGCGCTGAGAAGTGGGA
GGCGGCCGAGGCGGTGGTAAAGCAGGCATACAGTGAGTGTCCCAATTACG
ACCGGCTGGTAGCTGCCCTGCTCTCGGCACCGCTACCCCATGTCTTGCAG
ACCTGCCGGCTGGCGCCCGGCGTGCCCGTCAAGCCCATGCTAGCCAAGGC
TCAGGACTCGTTCCAGGATGTACTGCGGCGCATGCAGGGCTTGCATTTCA
CCATGGAATACAAGTACGACGGGGAGCGGGCACAGGTCCACCTCCTGCCT
GACGGTTCATTTAAGATCTTCTCCCGCAACTCCGAGGATACCACCACGAA
GTATCCAGACCTGCTGGCCGTGCTTCCTCAGGCTCTACGGGCCGGCACCA
CCTCCTTCGTCATCGACGCTGAGGCCGTGGCCATCGACCCTGACTCAGGC
AAGCTGCTACCCTTCCAGATCCTGAGCACACGCAAGCGTAAGAACGAGAA
GGTTGAAGATGTGAAGGTGCAGGTCGTGCTCTACGCCTTCGACATCCTCT
TTCTCAATGACCGGCCCGTACTCCAGGAGCCCCTCTTGCGGCGTCGCGCC
CTCCTTCGCGATGCCTTTGTCCCCGTGCCCGGCAAATTCGACTTCGCCAT
CTCGCTGGACCATCACGAGAACGGGGATACATCGGCCATCGAGGCCTTCC
TGGACGAGGCCGTGGCCGGCAACTGCGAGGGGCTCATGATCAAGACGCTA
GAGCAAAATGCCACCTACGAGCCCACAAAGCGCTCCCTAAACTGGCTTAA
GCTCAAAAAGGACTACCTCTCTGGCGGGGCAAGTGGCGGTGGGCGGGGAC
CGGCTGATTCTCTTGACCTGGTGGTACTGGGCGGCAACCACGGGCAAGGC
AAGCGTGTGGGCTGGTATGGGGCCTTCCTGCTGGCCTGCTACGATTCAGA
GACGGAGGAGTACCAGTCAGTCTGCAAGATCGGCACCGGCTTCTCGGAGG
AGTTTCTGGCCGCCATGAAACCCCAGCTGGACGTCCTCATCCTGCCCGGG
GGCAAGCCCGGCTACTACAACACCAGCCTGGACTGCGACGTTTGGTTCGA
GCCCAAAATCGTCTGGGAAGTGCGAGCCGCGGACTTGAGCGTATCGCCCG
CGCACAAGGGTGCGCTGGATAAGGTGGAAAAGGGCAAGGGGATCGCTCTC
CGCTTTCCGCGTTTCATCCGTAACAGGGCCGACAAGGCCCCAGAGGACGC
GACCAGTGCGGAGCAGATCGCGGAGGCCTACCGCAGCCAAGCCCTGGTGG
AGGCCACTCTGACCAACGGGGGAGGTAAGGGCAAAGGTGCACAGGACGAG
GATGACGATTGGTGTATCTAA

Synonyms

Publications