jgi.p|Nanoce1779_2|590117, gene_5726 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590117
Unique Namegene_5726
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_11:428128..430599 -

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Properties
Property NameValue
TranscriptId590203
ProteinId590117
Product nameATP dependent DNA ligase domain-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:428128..430599 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003910DNA ligase (ATP) activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO:0006281DNA repair
GO:0006310DNA recombination
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL069ncniL069Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01570NO14G01570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590117mRNA_5726-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590117mRNA_5726Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|590117

>mRNA_5726-protein ID=mRNA_5726-protein|Name=jgi.p|Nanoce1779_2|590117|organism=Nannochloropsis oceanica|type=polypeptide|length=707bp
MPKIKKPTKSTNKAKAAAATTRRIIEEIRELTPGYPSLPYQTLTNVLEAV
EAVTGRLEITDIVRELFAKTIECCPTDLPVLLYLLCGKIGPAYEAVELGI
GDKNIVDALVKGLGCSSASLNQKGEGADGDLGTAAQRAKGSQRTLNFGAK
PNPLTSQQVLQGFRDVAACAGGKSMTQKIDIIRKLLMRCAKEGAEVKFLV
RGLQTKLRCRLAEPTVLTALSQAFVQTPPVLNAVVEEEMSSLAEATALAH
GVAVLCNPKAGRAEKWEAAEAVVKQAYSECPNYDRLVAALLSAPLPHVLQ
TCRLAPGVPVKPMLAKAQDSFQDVLRRMQGLHFTMEYKYDGERAQVHLLP
DGSFKIFSRNSEDTTTKYPDLLAVLPQALRAGTTSFVIDAEAVAIDPDSG
KLLPFQILSTRKRKNEKVEDVKVQVVLYAFDILFLNDRPVLQEPLLRRRA
LLRDAFVPVPGKFDFAISLDHHENGDTSAIEAFLDEAVAGNCEGLMIKTL
EQNATYEPTKRSLNWLKLKKDYLSGGASGGGRGPADSLDLVVLGGNHGQG
KRVGWYGAFLLACYDSETEEYQSVCKIGTGFSEEFLAAMKPQLDVLILPG
GKPGYYNTSLDCDVWFEPKIVWEVRAADLSVSPAHKGALDKVEKGKGIAL
RFPRFIRNRADKAPEDATSAEQIAEAYRSQALVEATLTNGGGKGKGAQDE
DDDWCI*
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Synonyms
Publications