jgi.p|Nanoce1779_2|590042, mRNA_5701 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590042
Unique Name	mRNA_5701
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	5460
Alignment location	scaffold_11:355047..360506 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590128
Track	FilteredModels2
ProteinId	590042

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:355047..360506 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590042	gene_5701	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590042	mRNA_5701-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5701	CDS_5701	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:355047..360506+
coding sequence from alignment at scaffold_11:355047..360506+

mRNA sequence

>mRNA_5701 ID=mRNA_5701|Name=jgi.p|Nanoce1779_2|590042|organism=Nannochloropsis oceanica|type=mRNA|length=5460bp
AGGGGGAGGAGGGAAGAGGTCTAGTAGGGCGAGTTCTGGGAGTGGGGCGA
CATCTTCAATGGGGGGCGAGGTGGGGGGAACAGCAGTACCGTTGAAAGAA
TTTGTGGTGCGGATTTCGCATTTCGAGGTGGACGAGGGAGACGACTTAAA
CATGGCAACGTCAGCCAGGGTTTATTACACGCGACTGCCTGAAGATGTGT
TTGGAAGGGAGAACATGGGATGGGAAGACCTGTCGAGCCTGGACCCGGTG
AAGTGTAAGCTGAAGCCGGAGCAGGCTGCGGGGATAGAGAAGGAGGTAAG
GGATCGTTTGGCTCGAAAAAGTGAAGTGTTCTATTGGGACGGGGTGGATA
AGGGGAGTAAGGAGAAGATGCCGAAAAGTGTTGATTGGATTGCAGGGGCG
GTGGATCAGCGGGCAAGGAAGTATGAAAATATGCTGGTGATGGTCAAAGA
TGGACGAGGTCAGGCCCTGTCGGAGCTTACGAGTGTAATCAAGGGCATGT
ACAGCGTTCAATTGGAGGTGAAGCGAAGGGGGGAAGGAGAAGCAGTAGTG
GTGGAGGGAGCATCATGCTCGGAAATGAAGACGGTCGATGTGGATGGGCC
TTGTTATTCTTTTCGGTTGCCCCCCTCACTGGTAGCTGGAAGGTATTTGC
TGGCGTTTTCGATAGTGGGGCCAGCGCCGGGGTGTGAAAAGATCGGCGGC
ACGAACAACTTCAATGTGACTGTCAATGAGGAGCCGGCAGGAGAACCGAC
AGAAGCGGAGCTGGATGGATTGAGGTCGGGCTCACGGGGGGCGACATTAG
TATTCTCGGAGGAAATGCCTTTGCCAGCTTTTAGTCTCTTATTGAAGGAC
CATCGGAACCGGTCGACGACAACGGAGAGCGTGACATTGTGCTTGGAATT
GGAGAAGGACAATTTTAGCATCGAGTACCGGGGGAAGAAGGGGAAGCGCG
TACAAGGCGATGGGGCAATAGAGCAGGCCAGTACTGGGCGCAGCATCAAG
AAGCGCGGACAAGGCGCTGCTGCAGTAGCAGCAGCAGTGTCGACAGTGGC
GCTTTCCTCGTTCTCTTCCAACATCTGCTTCAAGATGAATGCGGAGGCGG
CGGAGGAAGGGATAATCTTTGAGACGGGTGATTGGGTGTTGTTACCTAAT
TTGAGCAAGGGTCCTATCCTTGGGGGAGAAACGCCCGAGACCCTGAAGAA
GGCTATTACCATTATAGTGATCTCGGCAGGGGAAAAGCTGCAGAACCAGC
GATTGAAACGTGAATTGGTCATCGAGCCGGGTTTGCCTGTGAGCTTGGAG
CTGGTGGAGCCTGAGTTGAAGGGACGGGCGGGGAGCACCACTCCGGAGAC
AGCACTCAAGATATCGAGTGAGACACAGGTCTTGCCAACATTGAGGTTCA
AGGCGTTGGATGTGGGTGGAAATGTGACGGCCCCGGGGAGGACGCAACGG
TGGGGGGTGGAATTAGCCATGGATGAGAAGGGGGTAAGGTTAGTTGAGCC
GGCGACGAGGAGGAATGATCCTGGTTGGAAAGTGAGTCCCTTGGGGGAGG
TCTTACTGGATGGCTTGAGTTTGAATGTGACGTTTAAAAAGGAGGATAAG
GGGAGGAAGATGGTGACTTTGGAGGTGACGGGCACGGCGGGGGAGGAGAG
CTTTTCGGCGTCTCCCGTACATTTGGCTGTTGAGGCGCAAAAAGGTGTGC
CGAAGCGGGCCTGGCTGGAAATGAAGGGGGAGGGAATTTTGAATGACGGG
ATGATTGCGTCGACTGCCGAGGAGGCGGATGATGAAGAGGTGGAGGAGGA
GGGTGAGGGGGAGGAAGTGGGGATGGTGCGTGTGAAGGCTGGGAGGAAGA
TGAAGGTTTTGTTGCCTGCAGGCTCGACTGTGTTGAAGCCAACGGTGGTG
GTGGTGGATGAGACAGGTATGCATTTGGACCCTGCGAAAGTTGGGATGAA
GGTCAAGGCGACTGCTACTTCCTGGAGTCACACCAAGGAGTTGAGCGATG
CTGCGGAGCTTCCGACCCTCCCCGGTCCCACGGACAAGGTGATCAAGATC
CAGGTTCAGGTGTTCCACGCCAAGCAGACTGCCAGCAGCATGGGCCGGAG
CGTGGCACCTGCATTTTTGCTTGAGGCCGACATCCACCCTATTCCTGGGG
AGCCTGATCACATTTCTTTTACTCGCGATTTGGCCGGCCCGGTTCGTTGT
GGGGTATCTTTTAATAAGCAGAAGTCCCTCATTCATTACCGTGATAAGTT
CAAGAACTTCTTGGTCGTCGATCCGGCACATGCCTTACCTTGCCCGGAGC
TGCAGTGGACGTCGAGCGATAAGAATATCCCCATGAAACAGGAGCCGGAG
GGGCCGCTGAAGACGGTGTTGGGGGAGGATGGGGCGTATCACTTGCCAAC
GGATGTGACGCTGTGGGGCAAGGCAAGGGAGATCAAGCTGAGGGTGACGG
CCCCTAAGTTTACGCCGATGAAGAGTATGGTTAAGCTCTTGCCGGGACCC
GCACATGCTTTGAAGCTGGTCGCCCCCAAACACGGGGTGGAGGTACTGTC
GGACAAGCCTGCTATCAACCTCTGCCGAGGTGAGAAGCTCGAATCACTTT
CCATCGCCTTCCTCGACGAGTGCGGGAATCGTGTCAACCCCCCCACAGAC
GGCGTCCTCTCTCTCTTCTGGAATGACCGTGTCTCCTCGCGGACGAGCAC
GGCTGCCTCCCGTCCGTCCCTCACGAATCCCAGCCCCAGCGAGCTGATTT
CGAAGGTAGTAATCGGGAAGGAGCATCAGACGGGCGATCCTGATAATTTC
ATCCCCCCGGACCTTCTAGCCTTGCCGACCTTTGTCTTCAATGAGCGGAG
GGAACGCGTGTTGCGCGTGGAGCTCAAAGCACCGGGTAGGGGACAGGAGG
GAGGGGAGGTGCTCTGTACGGGTGAGATGGTGGTGAAGACCTACTTGGTC
AATCGGGTAGTGGGCATGCGCGTGGTGGTGGGAGAGGCGACGCGTATTTC
TTACCCTGAGGAGAGGGGAGTGAATGACCAGAGGGCTTTGACGAGCCCGA
TGTTGGAGAAAGGGCTATTACAGTTTAAGCCTCAGGATCGGTGGGATGTT
GATACGGGGCCACCGGCTTTGGGGATTGTGCTTGAGACGGAGGATAAGGA
GGATCCGACCAATTTGAATTTGGCCTTGAATGCAGGCGTGTTCCGTGTAA
GAGTCGAGAGGGAGGGAACGACGCGCGTGCACAATGAGGACTGGTATAAG
GGGGTGGAAGTGGAGGAGGGCGTGCTGACTGAGGATGGAAAGCGGGTCTT
TGTCCTGGCGCCCTCTACGGATTGCACAATGGGCGACCCGGGCAACTTTC
AGATTCGGTTAAGCTACCTAGAACAGCGGGAGCATATCAAGCGCGTCACC
CCCAACAAAAAGGACTGGCAGCTGGACAAGCCTGCAATAGTCTACATTCA
GCACGGGCGCGCTGTCGGCCTCCGCTCCGAGGATAGCACCTTGGAGGCAA
TTGCTCTTTCCGCCTCCAACAACCGTGATGATCCTAGCGCGCGACAAATC
TTGCGCGAAGCCCGTTTCTACCCCATTGATCAGCAGGGGAAGCGGACCCG
GCACGAGAGTAATCTGATTGTCACGGTTGTGACGGGGCCACCAGGCCCGC
CGGAGGTGCCTCCTGCTGGTCAAGGGCCTTGCATTGTTCGCGGGCGAGTC
ACGGCTGAGCCTCGGCAGGACATCAAGACGGGGTTGACCACTTACTTGAT
TCCAGAGATAAGCTTGGAGAAGGACGTGGGGACAGAGAGTGGAAGTTATC
GTCTCAAGTTTGACTCGCCTGGTTTGGAGCCTTATTTTAAGACGTTTGAT
TTTACTACGGATTTGGAACGGCAGCTGAAGATAAGGAGGTTGAACCAGGA
GCTGAACCCTTTGCGGCAGGAAGTGATGGCCTGGAAGCATGAGGTGCAAG
GGATGGAGGGACAGGCGCACGAGTTGACCGGTCGACTTCACGGGGAGCTG
CGATACCTGCACGCACAAGCGGGTTTATTTCCCCGCACGCCCCAGGGAGA
ATTACCCACCTCTCAGGAGCTGAGGGAGGCGAAGGCCCATTTGGAGAATG
GAATTCGGGCGTTGCGAAGTCAGGAGGTGGCAGTGTTGAGGAAGCGGCCG
GGCTATCTCGTGCCGGCTGTATTGTCGCAGGGATTCAAAGAGGTCGTGAC
TGTGGGGATGGTCCCTGATCGGAGGCTGGCGGAGTTGCTTTCGTGGTACG
CGACAACGAGGAATATGAAGGCAGTTATCTGTCAAACCAACGCGGATTAC
AAGCGGGTGAAACTGTTGCAGCGGGATGTGACCGTATACTCGTTGCAGGA
CACGGAGGAGTTCCGGTCTCGCGATAAGACGCGGGAGCAGATCTTGAAGG
ACAAGCGACTGCCATTGCCTCCTATTGATGCCAAATTTAATTACAGGGGC
CATGCGGTGAATATGATTGTACTGCGGGAGGAGGACGAGCACTTGCGGCA
GTCGGTATTTTGGTCAATGTTCTCCAACACTGTCATTTTGGGGACGGAGG
ATGATGCTCTTGCCTATCGAGAGTATTGCAAACATCGTGGTATCCGCCGG
CCGACCATTCTCTGTTATCAAGACGGGCGCCGCTTGCGAGCGTCAGGCCC
TTTGGATGGGGAGGATAAGTTTGGGTCGTCGGAGGCGAGGAGGCTTGAGT
TTGTGTTTGGCGGGCAGGACCCGCAGGAGACAGAAGCGTTCAAGGCGCAG
TTGATGGCGAAGGACAAGGTGGACGAGCTCTTTGTGGTGTACCAGGAGTT
GGATGTGATAAGGGGGCAGATGCAGGCGAAGAAGCAAGATGTCCGTATGT
TGGAATTGCAGAAGCGTGTGTCGGCGATGGAGCTGGAGCTGAAGAATATC
CTGGGCAACCGTGTCTAGAGGGACATAATCTGGAAAGGGTGAGAGGCAGC
CTGAGGGTATGAGGTACTGGCCATATGTTGGAAACATTATAATACAAGCA
TATTTGGCCCCAGAAAGAACGTTAGTGAGTGAGTGTATGAATGAGAGAGT
GGATTATGTATGTAAAATCTATCGATGAGAGTGATCTAGAAAGCATCGTG
CGAGAAAGAGAGAGAAAATATGCAATGGGAGATGACAGTATGAGAGTTGA
ATGACAAATTCAGAATATCAGGCGGGAAGAGCGAAACAAAGTAGCGCTCG
CAGGAGCCAACAGGAACCCCTGGCATTTAAAATATACATGTATAATGGGT
GTTACCTATAAGTGTATCCTACTTATTGAAGTCGCAAGCAACTACAGTGG
TAGCAGCAGTAGCAGTAGCAGCAAGTAACAACATAGCAAACGGACAACCA
CGGGACGACAACGAATATCAACAGCATCAAGCGACGAAAAGGAACGAGCC
TAAGAGAACAATATGCGAAACGATTTAATGAGCAAGAAGAACGAAAAAGA
ATTCATCGAC

protein sequence of jgi.p|Nanoce1779_2|590042

>mRNA_5701-protein ID=mRNA_5701-protein|Name=jgi.p|Nanoce1779_2|590042|organism=Nannochloropsis oceanica|type=polypeptide|length=1620bp
MGGEVGGTAVPLKEFVVRISHFEVDEGDDLNMATSARVYYTRLPEDVFGR
ENMGWEDLSSLDPVKCKLKPEQAAGIEKEVRDRLARKSEVFYWDGVDKGS
KEKMPKSVDWIAGAVDQRARKYENMLVMVKDGRGQALSELTSVIKGMYSV
QLEVKRRGEGEAVVVEGASCSEMKTVDVDGPCYSFRLPPSLVAGRYLLAF
SIVGPAPGCEKIGGTNNFNVTVNEEPAGEPTEAELDGLRSGSRGATLVFS
EEMPLPAFSLLLKDHRNRSTTTESVTLCLELEKDNFSIEYRGKKGKRVQG
DGAIEQASTGRSIKKRGQGAAAVAAAVSTVALSSFSSNICFKMNAEAAEE
GIIFETGDWVLLPNLSKGPILGGETPETLKKAITIIVISAGEKLQNQRLK
RELVIEPGLPVSLELVEPELKGRAGSTTPETALKISSETQVLPTLRFKAL
DVGGNVTAPGRTQRWGVELAMDEKGVRLVEPATRRNDPGWKVSPLGEVLL
DGLSLNVTFKKEDKGRKMVTLEVTGTAGEESFSASPVHLAVEAQKGVPKR
AWLEMKGEGILNDGMIASTAEEADDEEVEEEGEGEEVGMVRVKAGRKMKV
LLPAGSTVLKPTVVVVDETGMHLDPAKVGMKVKATATSWSHTKELSDAAE
LPTLPGPTDKVIKIQVQVFHAKQTASSMGRSVAPAFLLEADIHPIPGEPD
HISFTRDLAGPVRCGVSFNKQKSLIHYRDKFKNFLVVDPAHALPCPELQW
TSSDKNIPMKQEPEGPLKTVLGEDGAYHLPTDVTLWGKAREIKLRVTAPK
FTPMKSMVKLLPGPAHALKLVAPKHGVEVLSDKPAINLCRGEKLESLSIA
FLDECGNRVNPPTDGVLSLFWNDRVSSRTSTAASRPSLTNPSPSELISKV
VIGKEHQTGDPDNFIPPDLLALPTFVFNERRERVLRVELKAPGRGQEGGE
VLCTGEMVVKTYLVNRVVGMRVVVGEATRISYPEERGVNDQRALTSPMLE
KGLLQFKPQDRWDVDTGPPALGIVLETEDKEDPTNLNLALNAGVFRVRVE
REGTTRVHNEDWYKGVEVEEGVLTEDGKRVFVLAPSTDCTMGDPGNFQIR
LSYLEQREHIKRVTPNKKDWQLDKPAIVYIQHGRAVGLRSEDSTLEAIAL
SASNNRDDPSARQILREARFYPIDQQGKRTRHESNLIVTVVTGPPGPPEV
PPAGQGPCIVRGRVTAEPRQDIKTGLTTYLIPEISLEKDVGTESGSYRLK
FDSPGLEPYFKTFDFTTDLERQLKIRRLNQELNPLRQEVMAWKHEVQGME
GQAHELTGRLHGELRYLHAQAGLFPRTPQGELPTSQELREAKAHLENGIR
ALRSQEVAVLRKRPGYLVPAVLSQGFKEVVTVGMVPDRRLAELLSWYATT
RNMKAVICQTNADYKRVKLLQRDVTVYSLQDTEEFRSRDKTREQILKDKR
LPLPPIDAKFNYRGHAVNMIVLREEDEHLRQSVFWSMFSNTVILGTEDDA
LAYREYCKHRGIRRPTILCYQDGRRLRASGPLDGEDKFGSSEARRLEFVF
GGQDPQETEAFKAQLMAKDKVDELFVVYQELDVIRGQMQAKKQDVRMLEL
QKRVSAMELELKNILGNRV*

mRNA from alignment at scaffold_11:355047..360506+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5701 ID=mRNA_5701|Name=jgi.p|Nanoce1779_2|590042|organism=Nannochloropsis oceanica|type=mRNA|length=5460bp|location=Sequence derived from alignment at scaffold_11:355047..360506+ (Nannochloropsis oceanica)
AGGGGGAGGAGGGAAGAGGTCTAGTAGGGCGAGTTCTGGGAGTGGGGCGA
CATCTTCAATGGGGGGCGAGGTGGGGGGAACAGCAGTACCGTTGAAAGAA
TTTGTGGTGCGGATTTCGCATTTCGAGGTGGACGAGGGAGACGACTTAAA
CATGGCAACGTCAGCCAGGGTTTATTACACGCGACTGCCTGAAGATGTGT
TTGGAAGGGAGAACATGGGATGGGAAGACCTGTCGAGCCTGGACCCGGTG
AAGTGTAAGCTGAAGCCGGAGCAGGCTGCGGGGATAGAGAAGGAGGTAAG
GGATCGTTTGGCTCGAAAAAGTGAAGTGTTCTATTGGGACGGGGTGGATA
AGGGGAGTAAGGAGAAGATGCCGAAAAGTGTTGATTGGATTGCAGGGGCG
GTGGATCAGCGGGCAAGGAAGTATGAAAATATGCTGGTGATGGTCAAAGA
TGGACGAGGTCAGGCCCTGTCGGAGCTTACGAGTGTAATCAAGGGCATGT
ACAGCGTTCAATTGGAGGTGAAGCGAAGGGGGGAAGGAGAAGCAGTAGTG
GTGGAGGGAGCATCATGCTCGGAAATGAAGACGGTCGATGTGGATGGGCC
TTGTTATTCTTTTCGGTTGCCCCCCTCACTGGTAGCTGGAAGGTATTTGC
TGGCGTTTTCGATAGTGGGGCCAGCGCCGGGGTGTGAAAAGATCGGCGGC
ACGAACAACTTCAATGTGACTGTCAATGAGGAGCCGGCAGGAGAACCGAC
AGAAGCGGAGCTGGATGGATTGAGGTCGGGCTCACGGGGGGCGACATTAG
TATTCTCGGAGGAAATGCCTTTGCCAGCTTTTAGTCTCTTATTGAAGGAC
CATCGGAACCGGTCGACGACAACGGAGAGCGTGACATTGTGCTTGGAATT
GGAGAAGGACAATTTTAGCATCGAGTACCGGGGGAAGAAGGGGAAGCGCG
TACAAGGCGATGGGGCAATAGAGCAGGCCAGTACTGGGCGCAGCATCAAG
AAGCGCGGACAAGGCGCTGCTGCAGTAGCAGCAGCAGTGTCGACAGTGGC
GCTTTCCTCGTTCTCTTCCAACATCTGCTTCAAGATGAATGCGGAGGCGG
CGGAGGAAGGGATAATCTTTGAGACGGGTGATTGGGTGTTGTTACCTAAT
TTGAGCAAGGGTCCTATCCTTGGGGGAGAAACGCCCGAGACCCTGAAGAA
GGCTATTACCATTATAGTGATCTCGGCAGGGGAAAAGCTGCAGAACCAGC
GATTGAAACGTGAATTGGTCATCGAGCCGGGTTTGCCTGTGAGCTTGGAG
CTGGTGGAGCCTGAGTTGAAGGGACGGGCGGGGAGCACCACTCCGGAGAC
AGCACTCAAGATATCGAGTGAGACACAGGTCTTGCCAACATTGAGGTTCA
AGGCGTTGGATGTGGGTGGAAATGTGACGGCCCCGGGGAGGACGCAACGG
TGGGGGGTGGAATTAGCCATGGATGAGAAGGGGGTAAGGTTAGTTGAGCC
GGCGACGAGGAGGAATGATCCTGGTTGGAAAGTGAGTCCCTTGGGGGAGG
TCTTACTGGATGGCTTGAGTTTGAATGTGACGTTTAAAAAGGAGGATAAG
GGGAGGAAGATGGTGACTTTGGAGGTGACGGGCACGGCGGGGGAGGAGAG
CTTTTCGGCGTCTCCCGTACATTTGGCTGTTGAGGCGCAAAAAGGTGTGC
CGAAGCGGGCCTGGCTGGAAATGAAGGGGGAGGGAATTTTGAATGACGGG
ATGATTGCGTCGACTGCCGAGGAGGCGGATGATGAAGAGGTGGAGGAGGA
GGGTGAGGGGGAGGAAGTGGGGATGGTGCGTGTGAAGGCTGGGAGGAAGA
TGAAGGTTTTGTTGCCTGCAGGCTCGACTGTGTTGAAGCCAACGGTGGTG
GTGGTGGATGAGACAGGTATGCATTTGGACCCTGCGAAAGTTGGGATGAA
GGTCAAGGCGACTGCTACTTCCTGGAGTCACACCAAGGAGTTGAGCGATG
CTGCGGAGCTTCCGACCCTCCCCGGTCCCACGGACAAGGTGATCAAGATC
CAGGTTCAGGTGTTCCACGCCAAGCAGACTGCCAGCAGCATGGGCCGGAG
CGTGGCACCTGCATTTTTGCTTGAGGCCGACATCCACCCTATTCCTGGGG
AGCCTGATCACATTTCTTTTACTCGCGATTTGGCCGGCCCGGTTCGTTGT
GGGGTATCTTTTAATAAGCAGAAGTCCCTCATTCATTACCGTGATAAGTT
CAAGAACTTCTTGGTCGTCGATCCGGCACATGCCTTACCTTGCCCGGAGC
TGCAGTGGACGTCGAGCGATAAGAATATCCCCATGAAACAGGAGCCGGAG
GGGCCGCTGAAGACGGTGTTGGGGGAGGATGGGGCGTATCACTTGCCAAC
GGATGTGACGCTGTGGGGCAAGGCAAGGGAGATCAAGCTGAGGGTGACGG
CCCCTAAGTTTACGCCGATGAAGAGTATGGTTAAGCTCTTGCCGGGACCC
GCACATGCTTTGAAGCTGGTCGCCCCCAAACACGGGGTGGAGGTACTGTC
GGACAAGCCTGCTATCAACCTCTGCCGAGGTGAGAAGCTCGAATCACTTT
CCATCGCCTTCCTCGACGAGTGCGGGAATCGTGTCAACCCCCCCACAGAC
GGCGTCCTCTCTCTCTTCTGGAATGACCGTGTCTCCTCGCGGACGAGCAC
GGCTGCCTCCCGTCCGTCCCTCACGAATCCCAGCCCCAGCGAGCTGATTT
CGAAGGTAGTAATCGGGAAGGAGCATCAGACGGGCGATCCTGATAATTTC
ATCCCCCCGGACCTTCTAGCCTTGCCGACCTTTGTCTTCAATGAGCGGAG
GGAACGCGTGTTGCGCGTGGAGCTCAAAGCACCGGGTAGGGGACAGGAGG
GAGGGGAGGTGCTCTGTACGGGTGAGATGGTGGTGAAGACCTACTTGGTC
AATCGGGTAGTGGGCATGCGCGTGGTGGTGGGAGAGGCGACGCGTATTTC
TTACCCTGAGGAGAGGGGAGTGAATGACCAGAGGGCTTTGACGAGCCCGA
TGTTGGAGAAAGGGCTATTACAGTTTAAGCCTCAGGATCGGTGGGATGTT
GATACGGGGCCACCGGCTTTGGGGATTGTGCTTGAGACGGAGGATAAGGA
GGATCCGACCAATTTGAATTTGGCCTTGAATGCAGGCGTGTTCCGTGTAA
GAGTCGAGAGGGAGGGAACGACGCGCGTGCACAATGAGGACTGGTATAAG
GGGGTGGAAGTGGAGGAGGGCGTGCTGACTGAGGATGGAAAGCGGGTCTT
TGTCCTGGCGCCCTCTACGGATTGCACAATGGGCGACCCGGGCAACTTTC
AGATTCGGTTAAGCTACCTAGAACAGCGGGAGCATATCAAGCGCGTCACC
CCCAACAAAAAGGACTGGCAGCTGGACAAGCCTGCAATAGTCTACATTCA
GCACGGGCGCGCTGTCGGCCTCCGCTCCGAGGATAGCACCTTGGAGGCAA
TTGCTCTTTCCGCCTCCAACAACCGTGATGATCCTAGCGCGCGACAAATC
TTGCGCGAAGCCCGTTTCTACCCCATTGATCAGCAGGGGAAGCGGACCCG
GCACGAGAGTAATCTGATTGTCACGGTTGTGACGGGGCCACCAGGCCCGC
CGGAGGTGCCTCCTGCTGGTCAAGGGCCTTGCATTGTTCGCGGGCGAGTC
ACGGCTGAGCCTCGGCAGGACATCAAGACGGGGTTGACCACTTACTTGAT
TCCAGAGATAAGCTTGGAGAAGGACGTGGGGACAGAGAGTGGAAGTTATC
GTCTCAAGTTTGACTCGCCTGGTTTGGAGCCTTATTTTAAGACGTTTGAT
TTTACTACGGATTTGGAACGGCAGCTGAAGATAAGGAGGTTGAACCAGGA
GCTGAACCCTTTGCGGCAGGAAGTGATGGCCTGGAAGCATGAGGTGCAAG
GGATGGAGGGACAGGCGCACGAGTTGACCGGTCGACTTCACGGGGAGCTG
CGATACCTGCACGCACAAGCGGGTTTATTTCCCCGCACGCCCCAGGGAGA
ATTACCCACCTCTCAGGAGCTGAGGGAGGCGAAGGCCCATTTGGAGAATG
GAATTCGGGCGTTGCGAAGTCAGGAGGTGGCAGTGTTGAGGAAGCGGCCG
GGCTATCTCGTGCCGGCTGTATTGTCGCAGGGATTCAAAGAGGTCGTGAC
TGTGGGGATGGTCCCTGATCGGAGGCTGGCGGAGTTGCTTTCGTGGTACG
CGACAACGAGGAATATGAAGGCAGTTATCTGTCAAACCAACGCGGATTAC
AAGCGGGTGAAACTGTTGCAGCGGGATGTGACCGTATACTCGTTGCAGGA
CACGGAGGAGTTCCGGTCTCGCGATAAGACGCGGGAGCAGATCTTGAAGG
ACAAGCGACTGCCATTGCCTCCTATTGATGCCAAATTTAATTACAGGGGC
CATGCGGTGAATATGATTGTACTGCGGGAGGAGGACGAGCACTTGCGGCA
GTCGGTATTTTGGTCAATGTTCTCCAACACTGTCATTTTGGGGACGGAGG
ATGATGCTCTTGCCTATCGAGAGTATTGCAAACATCGTGGTATCCGCCGG
CCGACCATTCTCTGTTATCAAGACGGGCGCCGCTTGCGAGCGTCAGGCCC
TTTGGATGGGGAGGATAAGTTTGGGTCGTCGGAGGCGAGGAGGCTTGAGT
TTGTGTTTGGCGGGCAGGACCCGCAGGAGACAGAAGCGTTCAAGGCGCAG
TTGATGGCGAAGGACAAGGTGGACGAGCTCTTTGTGGTGTACCAGGAGTT
GGATGTGATAAGGGGGCAGATGCAGGCGAAGAAGCAAGATGTCCGTATGT
TGGAATTGCAGAAGCGTGTGTCGGCGATGGAGCTGGAGCTGAAGAATATC
CTGGGCAACCGTGTCTAGAGGGACATAATCTGGAAAGGGTGAGAGGCAGC
CTGAGGGTATGAGGTACTGGCCATATGTTGGAAACATTATAATACAAGCA
TATTTGGCCCCAGAAAGAACGTTAGTGAGTGAGTGTATGAATGAGAGAGT
GGATTATGTATGTAAAATCTATCGATGAGAGTGATCTAGAAAGCATCGTG
CGAGAAAGAGAGAGAAAATATGCAATGGGAGATGACAGTATGAGAGTTGA
ATGACAAATTCAGAATATCAGGCGGGAAGAGCGAAACAAAGTAGCGCTCG
CAGGAGCCAACAGGAACCCCTGGCATTTAAAATATACATGTATAATGGGT
GTTACCTATAAGTGTATCCTACTTATTGAAGTCGCAAGCAACTACAGTGG
TAGCAGCAGTAGCAGTAGCAGCAAGTAACAACATAGCAAACGGACAACCA
CGGGACGACAACGAATATCAACAGCATCAAGCGACGAAAAGGAACGAGCC
TAAGAGAACAATATGCGAAACGATTTAATGAGCAAGAAGAACGAAAAAGA
ATTCATCGAC

Coding sequence (CDS) from alignment at scaffold_11:355047..360506+

>mRNA_5701 ID=mRNA_5701|Name=jgi.p|Nanoce1779_2|590042|organism=Nannochloropsis oceanica|type=CDS|length=4860bp|location=Sequence derived from alignment at scaffold_11:355047..360506+ (Nannochloropsis oceanica)
ATGGGGGGCGAGGTGGGGGGAACAGCAGTACCGTTGAAAGAATTTGTGGT
GCGGATTTCGCATTTCGAGGTGGACGAGGGAGACGACTTAAACATGGCAA
CGTCAGCCAGGGTTTATTACACGCGACTGCCTGAAGATGTGTTTGGAAGG
GAGAACATGGGATGGGAAGACCTGTCGAGCCTGGACCCGGTGAAGTGTAA
GCTGAAGCCGGAGCAGGCTGCGGGGATAGAGAAGGAGGTAAGGGATCGTT
TGGCTCGAAAAAGTGAAGTGTTCTATTGGGACGGGGTGGATAAGGGGAGT
AAGGAGAAGATGCCGAAAAGTGTTGATTGGATTGCAGGGGCGGTGGATCA
GCGGGCAAGGAAGTATGAAAATATGCTGGTGATGGTCAAAGATGGACGAG
GTCAGGCCCTGTCGGAGCTTACGAGTGTAATCAAGGGCATGTACAGCGTT
CAATTGGAGGTGAAGCGAAGGGGGGAAGGAGAAGCAGTAGTGGTGGAGGG
AGCATCATGCTCGGAAATGAAGACGGTCGATGTGGATGGGCCTTGTTATT
CTTTTCGGTTGCCCCCCTCACTGGTAGCTGGAAGGTATTTGCTGGCGTTT
TCGATAGTGGGGCCAGCGCCGGGGTGTGAAAAGATCGGCGGCACGAACAA
CTTCAATGTGACTGTCAATGAGGAGCCGGCAGGAGAACCGACAGAAGCGG
AGCTGGATGGATTGAGGTCGGGCTCACGGGGGGCGACATTAGTATTCTCG
GAGGAAATGCCTTTGCCAGCTTTTAGTCTCTTATTGAAGGACCATCGGAA
CCGGTCGACGACAACGGAGAGCGTGACATTGTGCTTGGAATTGGAGAAGG
ACAATTTTAGCATCGAGTACCGGGGGAAGAAGGGGAAGCGCGTACAAGGC
GATGGGGCAATAGAGCAGGCCAGTACTGGGCGCAGCATCAAGAAGCGCGG
ACAAGGCGCTGCTGCAGTAGCAGCAGCAGTGTCGACAGTGGCGCTTTCCT
CGTTCTCTTCCAACATCTGCTTCAAGATGAATGCGGAGGCGGCGGAGGAA
GGGATAATCTTTGAGACGGGTGATTGGGTGTTGTTACCTAATTTGAGCAA
GGGTCCTATCCTTGGGGGAGAAACGCCCGAGACCCTGAAGAAGGCTATTA
CCATTATAGTGATCTCGGCAGGGGAAAAGCTGCAGAACCAGCGATTGAAA
CGTGAATTGGTCATCGAGCCGGGTTTGCCTGTGAGCTTGGAGCTGGTGGA
GCCTGAGTTGAAGGGACGGGCGGGGAGCACCACTCCGGAGACAGCACTCA
AGATATCGAGTGAGACACAGGTCTTGCCAACATTGAGGTTCAAGGCGTTG
GATGTGGGTGGAAATGTGACGGCCCCGGGGAGGACGCAACGGTGGGGGGT
GGAATTAGCCATGGATGAGAAGGGGGTAAGGTTAGTTGAGCCGGCGACGA
GGAGGAATGATCCTGGTTGGAAAGTGAGTCCCTTGGGGGAGGTCTTACTG
GATGGCTTGAGTTTGAATGTGACGTTTAAAAAGGAGGATAAGGGGAGGAA
GATGGTGACTTTGGAGGTGACGGGCACGGCGGGGGAGGAGAGCTTTTCGG
CGTCTCCCGTACATTTGGCTGTTGAGGCGCAAAAAGGTGTGCCGAAGCGG
GCCTGGCTGGAAATGAAGGGGGAGGGAATTTTGAATGACGGGATGATTGC
GTCGACTGCCGAGGAGGCGGATGATGAAGAGGTGGAGGAGGAGGGTGAGG
GGGAGGAAGTGGGGATGGTGCGTGTGAAGGCTGGGAGGAAGATGAAGGTT
TTGTTGCCTGCAGGCTCGACTGTGTTGAAGCCAACGGTGGTGGTGGTGGA
TGAGACAGGTATGCATTTGGACCCTGCGAAAGTTGGGATGAAGGTCAAGG
CGACTGCTACTTCCTGGAGTCACACCAAGGAGTTGAGCGATGCTGCGGAG
CTTCCGACCCTCCCCGGTCCCACGGACAAGGTGATCAAGATCCAGGTTCA
GGTGTTCCACGCCAAGCAGACTGCCAGCAGCATGGGCCGGAGCGTGGCAC
CTGCATTTTTGCTTGAGGCCGACATCCACCCTATTCCTGGGGAGCCTGAT
CACATTTCTTTTACTCGCGATTTGGCCGGCCCGGTTCGTTGTGGGGTATC
TTTTAATAAGCAGAAGTCCCTCATTCATTACCGTGATAAGTTCAAGAACT
TCTTGGTCGTCGATCCGGCACATGCCTTACCTTGCCCGGAGCTGCAGTGG
ACGTCGAGCGATAAGAATATCCCCATGAAACAGGAGCCGGAGGGGCCGCT
GAAGACGGTGTTGGGGGAGGATGGGGCGTATCACTTGCCAACGGATGTGA
CGCTGTGGGGCAAGGCAAGGGAGATCAAGCTGAGGGTGACGGCCCCTAAG
TTTACGCCGATGAAGAGTATGGTTAAGCTCTTGCCGGGACCCGCACATGC
TTTGAAGCTGGTCGCCCCCAAACACGGGGTGGAGGTACTGTCGGACAAGC
CTGCTATCAACCTCTGCCGAGGTGAGAAGCTCGAATCACTTTCCATCGCC
TTCCTCGACGAGTGCGGGAATCGTGTCAACCCCCCCACAGACGGCGTCCT
CTCTCTCTTCTGGAATGACCGTGTCTCCTCGCGGACGAGCACGGCTGCCT
CCCGTCCGTCCCTCACGAATCCCAGCCCCAGCGAGCTGATTTCGAAGGTA
GTAATCGGGAAGGAGCATCAGACGGGCGATCCTGATAATTTCATCCCCCC
GGACCTTCTAGCCTTGCCGACCTTTGTCTTCAATGAGCGGAGGGAACGCG
TGTTGCGCGTGGAGCTCAAAGCACCGGGTAGGGGACAGGAGGGAGGGGAG
GTGCTCTGTACGGGTGAGATGGTGGTGAAGACCTACTTGGTCAATCGGGT
AGTGGGCATGCGCGTGGTGGTGGGAGAGGCGACGCGTATTTCTTACCCTG
AGGAGAGGGGAGTGAATGACCAGAGGGCTTTGACGAGCCCGATGTTGGAG
AAAGGGCTATTACAGTTTAAGCCTCAGGATCGGTGGGATGTTGATACGGG
GCCACCGGCTTTGGGGATTGTGCTTGAGACGGAGGATAAGGAGGATCCGA
CCAATTTGAATTTGGCCTTGAATGCAGGCGTGTTCCGTGTAAGAGTCGAG
AGGGAGGGAACGACGCGCGTGCACAATGAGGACTGGTATAAGGGGGTGGA
AGTGGAGGAGGGCGTGCTGACTGAGGATGGAAAGCGGGTCTTTGTCCTGG
CGCCCTCTACGGATTGCACAATGGGCGACCCGGGCAACTTTCAGATTCGG
TTAAGCTACCTAGAACAGCGGGAGCATATCAAGCGCGTCACCCCCAACAA
AAAGGACTGGCAGCTGGACAAGCCTGCAATAGTCTACATTCAGCACGGGC
GCGCTGTCGGCCTCCGCTCCGAGGATAGCACCTTGGAGGCAATTGCTCTT
TCCGCCTCCAACAACCGTGATGATCCTAGCGCGCGACAAATCTTGCGCGA
AGCCCGTTTCTACCCCATTGATCAGCAGGGGAAGCGGACCCGGCACGAGA
GTAATCTGATTGTCACGGTTGTGACGGGGCCACCAGGCCCGCCGGAGGTG
CCTCCTGCTGGTCAAGGGCCTTGCATTGTTCGCGGGCGAGTCACGGCTGA
GCCTCGGCAGGACATCAAGACGGGGTTGACCACTTACTTGATTCCAGAGA
TAAGCTTGGAGAAGGACGTGGGGACAGAGAGTGGAAGTTATCGTCTCAAG
TTTGACTCGCCTGGTTTGGAGCCTTATTTTAAGACGTTTGATTTTACTAC
GGATTTGGAACGGCAGCTGAAGATAAGGAGGTTGAACCAGGAGCTGAACC
CTTTGCGGCAGGAAGTGATGGCCTGGAAGCATGAGGTGCAAGGGATGGAG
GGACAGGCGCACGAGTTGACCGGTCGACTTCACGGGGAGCTGCGATACCT
GCACGCACAAGCGGGTTTATTTCCCCGCACGCCCCAGGGAGAATTACCCA
CCTCTCAGGAGCTGAGGGAGGCGAAGGCCCATTTGGAGAATGGAATTCGG
GCGTTGCGAAGTCAGGAGGTGGCAGTGTTGAGGAAGCGGCCGGGCTATCT
CGTGCCGGCTGTATTGTCGCAGGGATTCAAAGAGGTCGTGACTGTGGGGA
TGGTCCCTGATCGGAGGCTGGCGGAGTTGCTTTCGTGGTACGCGACAACG
AGGAATATGAAGGCAGTTATCTGTCAAACCAACGCGGATTACAAGCGGGT
GAAACTGTTGCAGCGGGATGTGACCGTATACTCGTTGCAGGACACGGAGG
AGTTCCGGTCTCGCGATAAGACGCGGGAGCAGATCTTGAAGGACAAGCGA
CTGCCATTGCCTCCTATTGATGCCAAATTTAATTACAGGGGCCATGCGGT
GAATATGATTGTACTGCGGGAGGAGGACGAGCACTTGCGGCAGTCGGTAT
TTTGGTCAATGTTCTCCAACACTGTCATTTTGGGGACGGAGGATGATGCT
CTTGCCTATCGAGAGTATTGCAAACATCGTGGTATCCGCCGGCCGACCAT
TCTCTGTTATCAAGACGGGCGCCGCTTGCGAGCGTCAGGCCCTTTGGATG
GGGAGGATAAGTTTGGGTCGTCGGAGGCGAGGAGGCTTGAGTTTGTGTTT
GGCGGGCAGGACCCGCAGGAGACAGAAGCGTTCAAGGCGCAGTTGATGGC
GAAGGACAAGGTGGACGAGCTCTTTGTGGTGTACCAGGAGTTGGATGTGA
TAAGGGGGCAGATGCAGGCGAAGAAGCAAGATGTCCGTATGTTGGAATTG
CAGAAGCGTGTGTCGGCGATGGAGCTGGAGCTGAAGAATATCCTGGGCAA
CCGTGTCTAG

Synonyms

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