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Properties
| Property Name | Value |
|---|
| TranscriptId | 577845 |
| Track | FilteredModels2 |
| ProteinId | 577759 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:1383434..1386044 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_570 ID=mRNA_570|Name=jgi.p|Nanoce1779_2|577759|organism=Nannochloropsis oceanica|type=mRNA|length=2248bp
AGCCACCCATGTACGTTGCCATCTATCGAGGCCGAGTTGTTGTTGCCATT
TCGCACCGCCAGCGCTGGGGCCCGCACAGCAGCACCAGTGCCAGCAGCTG
CAACAGTAGCGGCAGTAATCACGCAGTCACGCCCGCCTTCGCCAGCACGT
GGAGTACCGAAATTGACGGCTTGCTATACGCGCCCACGACTACCACACAG
GCTGGATTAGGCTCGTGCATGGGTGTGCAGACTCATCGGGGACGGTACGC
CGCCTTTACTTGCCTACAGCCTGATGAGAACAGCCAAAACGCTGACGCGG
AGGCTCTCGGTATGCTCGTGGCGGCTTACCTGTCAGGATGCTCCACAACT
CCCCACAGCGCAAATGATGAAAATAGCACGGACCCCCCACGCCAATTTTT
AAGCGCGGGCGCTGGCCTAGAGGCTCTGCTACGTGTGAGGGATGGCGACC
TGCTGCTGGGGAGTAGCGACACAGATGAACATGTGCTGATTGTGGCTCAC
TTACGGCAAGGTCGCGTGGTCGGCGTGCAGGACCTTAATCTCCAATTTGG
AGGATCGAGAGCCGATGGAGGCAGCGTATTGTTAAGAGCGCCTTCAACGT
TGAAGTCAGATCTAGACAGAGCAGTGCTATCTTGGCCAGAGGAAGTCAAT
GGAACGAAGAACTTCTGCAGTCGTGTTCTGTCGTCACTCGCTATGTGGCA
TTGTAAGTGTTACGGTCGACGACTTTGGTATTTCGCGACCACAGTCATTG
AGCAATCACTTAACAAGGTAAATATTTTCTACTTACATTTTTATCTCACT
CGGCCACGAGCTTATGCAGGTCAACACAATTATCCCGTAGATTTCTTTTG
CAGAGAAGTATTGGGACAGCAAAACGTCCGGGTATCAACAAGCGTACCAG
TCTCTATTCCTCACGAGATCATCCGTCTTGCACGACGACAGCATGCTCAG
TACCATACCAAGCACCTTTATGCTCATAGCTGCGCAAGATTTTTCACAAA
TGACAAAAGAGTACTCTGAACACAAAAAATTTGAACTTGGTCACCATCGG
ACTGCTTATGACCAATTTGTTCACCAGGAAGCCGAGCATGTCCCCCGAAT
GGACAAGAAAACATGGACAAGCGCAAGCCAGCTGTGGAGCCTGCGATGGG
CTACTATGCCGTTGGAGGAGTATCTTTTGTATCATGCTCAACTTAGATCC
GATAAATGATATGAAATCGTTGGAAGAAACAATTAAAAAGAAGTAAGGAG
TGTTTTCTAATTTCATGAATGTTTTTAACATCACTCTTTCTGTATTCTTA
TTACCCTTCCGTGGCATATATCATTATTGATTTGTTATCTGTCCTACCGG
AAAGAGCCTGGCACACTTTCTCATCCATCACAAAAAGGTGAAGCAGCTAC
CAAGATTGCCTTTGTCGCCATTTCAGCCTCAAATATATTAACATTTGACA
TGAAATCCTGATAAAATGAACCACTTTTTGCTGATTCATTTGTAGTCTCA
TTGTACTATAACCCTATTAAATGCTCTAAGAAAAAAAACAGAAAAATCAT
TTGTAGATGATTCAACTGCGTAGAATCTGTCTGTACGCGGTTGCAGTCTT
TTTCAATTATTGACGAGATAAGTAGTTCTTAATTATGCTCATCACCACTT
TTTCATTTGCGCGCATCATCCACTTCATGCACCCTTACTGCGTAAGCATA
CAGAATGTCACCTCCCTCCTTCTCCATCTTGGTCTCTTCGTCACGCCCAT
TCCCTGGCCCTAGCGATGTTGGCACATCTCTATATCTTTCAATATCTCCT
TTTGCTCTCCCTTCCCCGCTTTCAGGCCCCCCTTGTCGAGGCAAGGACAA
AGGCGCACTAGAAGGAAGTATTCCTGTTGTAGGAGGAGCCTCATGCAACG
TCGCGGGAGGTGCGCTTGCCGGCGGTGGTGAATGCAGCAGGAGTTGATGA
AGCGTCGCCGTTAGCTGCTCTGTTGCCCGGCTGCTTGCAGATTGCTGGGA
AGGGGAAGGGCGATGTGCTGATAGACGAGGAGGTCGAGTACCGGGGGGGT
AGGTTTCGCGGTGGTTGCAGCTGCTGGTGGCCCCGGCCGCCGTAGCAGCA
GCGGTGGCGGCTGCCGCTGTTGCATACTGTCTCTCGGCTCTGTTGGCTGT
CCTACCTTCCGATATTCCCACTCCCCGCTCCACAGACGAGTGGAAGACAG
GAGGAGAGGAGGAGGAGGAGGAAGTAAAGGAAGGCGGGGGGGAAGGAA back to topprotein sequence of jgi.p|Nanoce1779_2|577759 >mRNA_570-protein ID=mRNA_570-protein|Name=jgi.p|Nanoce1779_2|577759|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MYVAIYRGRVVVAISHRQRWGPHSSTSASSCNSSGSNHAVTPAFASTWST
EIDGLLYAPTTTTQAGLGSCMGVQTHRGRYAAFTCLQPDENSQNADAEAL
GMLVAAYLSGCSTTPHSANDENSTDPPRQFLSAGAGLEALLRVRDGDLLL
GSSDTDEHVLIVAHLRQGRVVGVQDLNLQFGGSRADGGSVLLRAPSTLKS
DLDRAVLSWPEEVNGTKNFCSRVLSSLAMWHCKCYGRRLWYFATTVIEQS
LNKVNIFYLHFYLTRPRAYAGQHNYPVDFFCREVLGQQNVRVSTSVPVSI
PHEIIRLARRQHAQYHTKHLYAHSCARFFTNDKRVL* back to topmRNA from alignment at scaffold_3:1383434..1386044- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_570 ID=mRNA_570|Name=jgi.p|Nanoce1779_2|577759|organism=Nannochloropsis oceanica|type=mRNA|length=2611bp|location=Sequence derived from alignment at scaffold_3:1383434..1386044- (Nannochloropsis oceanica)
AGCCACCCATGTACGTTGCCATCTATCGAGGCCGAGTTGTTGTTGCCATT
TCGCACCGCCAGCGCTGGGGCCCGCACAGCAGCACCAGTGCCAGCAGCTG
CAACAGTAGCGGCAGTAATCACGCAGTCACGCCCGCCTTCGCCAGCACGT
GGAGTACCGAAATTGACGGCTTGCTATACGCGCCCACGACTACCACACAG
GCTGGATTAGGCTCGTGCATGGGTGTGCAGACTCATCGGGGACGGTACGC
CGCCTTTACTTGCCTACAGCCTGATGAGAACAGCCAAAACGCTGACGCGG
AGGCTCTCGGTATGCTCGTGGCGGCTTACCTGTCAGGATGCTCCACAACT
CCCCACAGCGCAAATGATGAAAATAGCACGGACCCCCCACGCCAATTTTT
AAGCGCGGGCGCTGGCCTAGAGGCTCTGCTACGTGTGAGGGATGGCGACC
TGCTGCTGGGGAGTAGCGACACAGATGAACATGTGCTGATTGTGGCTCAC
TTACGGCAAGGTCGCGTGGTCGGCGTGCAGGACCTTAATCTCCAATTTGG
AGGATCGAGAGCCGATGGAGGCAGCGTATTGTTAAGGTGCGTTATTTTCA
TCTCCTCAAAGTACACAAATAGAGGTATTGAGACTCTGTAATGGGGTTCT
CATGCATGAAAATCACATTATCGCTGCTGCGTATTATGTAATATCCTCCT
GAAAATAGAGCGCCTTCAACGTTGAAGTCAGATCTAGACAGAGCAGTGCT
ATCTTGGCCAGAGGAAGTCAATGGAACGAAGAACTTCTGCAGTCGTGTTC
TGTCGTCACTCGCTATGTGGCATTGTAAGTGTTACGGTCGACGACTTTGG
TATTTCGCGACCACAGTCATTGAGCAATCACTTAACAAGGTAAATATTTT
CTACTTACATTTTTATCTCACTCGGCCACGAGCTTATGCAGGTCAACACA
ATTATCCCGTAGATTTCTTTTGCAGAGAAGTATTGGGACAGCAAAACGTC
CGGGTATCAACAAGCGTACCAGTCTCTATTCCTCACGAGATCATCCGTCT
TGCACGACGGTACGCTAATTAAGTATATGGATATTATACCCTCTTGAAAT
GTGTTGGAAGAGAGTGCTTTGGGGTGCCCATCATGGATAGTATGTTGTCA
CAGCGGAAAGAAGCTCTCAATACTTGAATTAAGACTTTTTTGGGGTGTAA
TTTCCATTTAATCGTACACAGACAGCATGCTCAGTACCATACCAAGCACC
TTTATGCTCATAGCTGCGCAAGATTTTTCACAAATGACAAAAGAGTACTC
TGAACACAAAAAATTTGAACTTGGTCACCATCGGACTGCTTATGACCAAT
TTGTTCACCAGGTGAGATTCGTATGTTTAGATTACCTAACCGTCTTCACG
TGTATTTTTGGTTCTAACTACTTCTAACTCGTCTACCTAGGAAGCCGAGC
ATGTCCCCCGAATGGACAAGAAAACATGGACAAGCGCAAGCCAGCTGTGG
AGCCTGCGATGGGCTACTATGCCGTTGGAGGAGTATCTTTTGTATCATGC
TCAACTTAGATCCGATAAATGATATGAAATCGTTGGAAGAAACAATTAAA
AAGAAGTAAGGAGTGTTTTCTAATTTCATGAATGTTTTTAACATCACTCT
TTCTGTATTCTTATTACCCTTCCGTGGCATATATCATTATTGATTTGTTA
TCTGTCCTACCGGAAAGAGCCTGGCACACTTTCTCATCCATCACAAAAAG
GTGAAGCAGCTACCAAGATTGCCTTTGTCGCCATTTCAGCCTCAAATATA
TTAACATTTGACATGAAATCCTGATAAAATGAACCACTTTTTGCTGATTC
ATTTGTAGTCTCATTGTACTATAACCCTATTAAATGCTCTAAGAAAAAAA
ACAGAAAAATCATTTGTAGATGATTCAACTGCGTAGAATCTGTCTGTACG
CGGTTGCAGTCTTTTTCAATTATTGACGAGATAAGTAGTTCTTAATTATG
CTCATCACCACTTTTTCATTTGCGCGCATCATCCACTTCATGCACCCTTA
CTGCGTAAGCATACAGAATGTCACCTCCCTCCTTCTCCATCTTGGTCTCT
TCGTCACGCCCATTCCCTGGCCCTAGCGATGTTGGCACATCTCTATATCT
TTCAATATCTCCTTTTGCTCTCCCTTCCCCGCTTTCAGGCCCCCCTTGTC
GAGGCAAGGACAAAGGCGCACTAGAAGGAAGTATTCCTGTTGTAGGAGGA
GCCTCATGCAACGTCGCGGGAGGTGCGCTTGCCGGCGGTGGTGAATGCAG
CAGGAGTTGATGAAGCGTCGCCGTTAGCTGCTCTGTTGCCCGGCTGCTTG
CAGATTGCTGGGAAGGGGAAGGGCGATGTGCTGATAGACGAGGAGGTCGA
GTACCGGGGGGGTAGGTTTCGCGGTGGTTGCAGCTGCTGGTGGCCCCGGC
CGCCGTAGCAGCAGCGGTGGCGGCTGCCGCTGTTGCATACTGTCTCTCGG
CTCTGTTGGCTGTCCTACCTTCCGATATTCCCACTCCCCGCTCCACAGAC
GAGTGGAAGACAGGAGGAGAGGAGGAGGAGGAGGAAGTAAAGGAAGGCGG
GGGGGAAGGAA back to topCoding sequence (CDS) from alignment at scaffold_3:1383434..1386044- >mRNA_570 ID=mRNA_570|Name=jgi.p|Nanoce1779_2|577759|organism=Nannochloropsis oceanica|type=CDS|length=3033bp|location=Sequence derived from alignment at scaffold_3:1383434..1386044- (Nannochloropsis oceanica)
ACAGCATGCTCAGTACCATACCAAGCACCTTTATGCTCATAGCTGCGCAA
GATTTTTCACAAATGACAAAAGAGTACTCTGAAGCGCCTTCAACGTTGAA
GTCAGATCTAGACAGAGCAGTGCTATCTTGGCCAGAGGAAGTCAATGGAA
CGAAGAACTTCTGCAGTCGTGTTCTGTCGTCACTCGCTATGTGGCATTGT
AAGTGTTACGGTCGACGACTTTGGTATTTCGCGACCACAGTCATTGAGCA
ATCACTTAACAAGGTAAATATTTTCTACTTACATTTTTATCTCACTCGGC
CACGAGCTTATGCAGGTCAACACAATTATCCCGTAGATTTCTTTTGCAGA
GAAGTATTGGGACAGCAAAACGTCCGGGTATCAACAAGCGTACCAGTCTC
TATTCCTCACGAGATCATCCGTCTTGCACGACGATGTACGTTGCCATCTA
TCGAGGCCGAGTTGTTGTTGCCATTTCGCACCGCCAGCGCTGGGGCCCGC
ACAGCAGCACCAGTGCCAGCAGCTGCAACAGTAGCGGCAGTAATCACGCA
GTCACGCCCGCCTTCGCCAGCACGTGGAGTACCGAAATTGACGGCTTGCT
ATACGCGCCCACGACTACCACACAGGCTGGATTAGGCTCGTGCATGGGTG
TGCAGACTCATCGGGGACGGTACGCCGCCTTTACTTGCCTACAGCCTGAT
GAGAACAGCCAAAACGCTGACGCGGAGGCTCTCGGTATGCTCGTGGCGGC
TTACCTGTCAGGATGCTCCACAACTCCCCACAGCGCAAATGATGAAAATA
GCACGGACCCCCCACGCCAATTTTTAAGCGCGGGCGCTGGCCTAGAGGCT
CTGCTACGTGTGAGGGATGGCGACCTGCTGCTGGGGAGTAGCGACACAGA
TGAACATGTGCTGATTGTGGCTCACTTACGGCAAGGTCGCGTGGTCGGCG
TGCAGGACCTTAATCTCCAATTTGGAGGATCGAGAGCCGATGGAGGCAGC
GTATTGTTAAGACAGCATGCTCAGTACCATACCAAGCACCTTTATGCTCA
TAGCTGCGCAAGATTTTTCACAAATGACAAAAGAGTACTCTGAAGCGCCT
TCAACGTTGAAGTCAGATCTAGACAGAGCAGTGCTATCTTGGCCAGAGGA
AGTCAATGGAACGAAGAACTTCTGCAGTCGTGTTCTGTCGTCACTCGCTA
TGTGGCATTGTAAGTGTTACGGTCGACGACTTTGGTATTTCGCGACCACA
GTCATTGAGCAATCACTTAACAAGGTAAATATTTTCTACTTACATTTTTA
TCTCACTCGGCCACGAGCTTATGCAGGTCAACACAATTATCCCGTAGATT
TCTTTTGCAGAGAAGTATTGGGACAGCAAAACGTCCGGGTATCAACAAGC
GTACCAGTCTCTATTCCTCACGAGATCATCCGTCTTGCACGACGATGTAC
GTTGCCATCTATCGAGGCCGAGTTGTTGTTGCCATTTCGCACCGCCAGCG
CTGGGGCCCGCACAGCAGCACCAGTGCCAGCAGCTGCAACAGTAGCGGCA
GTAATCACGCAGTCACGCCCGCCTTCGCCAGCACGTGGAGTACCGAAATT
GACGGCTTGCTATACGCGCCCACGACTACCACACAGGCTGGATTAGGCTC
GTGCATGGGTGTGCAGACTCATCGGGGACGGTACGCCGCCTTTACTTGCC
TACAGCCTGATGAGAACAGCCAAAACGCTGACGCGGAGGCTCTCGGTATG
CTCGTGGCGGCTTACCTGTCAGGATGCTCCACAACTCCCCACAGCGCAAA
TGATGAAAATAGCACGGACCCCCCACGCCAATTTTTAAGCGCGGGCGCTG
GCCTAGAGGCTCTGCTACGTGTGAGGGATGGCGACCTGCTGCTGGGGAGT
AGCGACACAGATGAACATGTGCTGATTGTGGCTCACTTACGGCAAGGTCG
CGTGGTCGGCGTGCAGGACCTTAATCTCCAATTTGGAGGATCGAGAGCCG
ATGGAGGCAGCGTATTGTTAAGACAGCATGCTCAGTACCATACCAAGCAC
CTTTATGCTCATAGCTGCGCAAGATTTTTCACAAATGACAAAAGAGTACT
CTGAAGCGCCTTCAACGTTGAAGTCAGATCTAGACAGAGCAGTGCTATCT
TGGCCAGAGGAAGTCAATGGAACGAAGAACTTCTGCAGTCGTGTTCTGTC
GTCACTCGCTATGTGGCATTGTAAGTGTTACGGTCGACGACTTTGGTATT
TCGCGACCACAGTCATTGAGCAATCACTTAACAAGGTAAATATTTTCTAC
TTACATTTTTATCTCACTCGGCCACGAGCTTATGCAGGTCAACACAATTA
TCCCGTAGATTTCTTTTGCAGAGAAGTATTGGGACAGCAAAACGTCCGGG
TATCAACAAGCGTACCAGTCTCTATTCCTCACGAGATCATCCGTCTTGCA
CGACGATGTACGTTGCCATCTATCGAGGCCGAGTTGTTGTTGCCATTTCG
CACCGCCAGCGCTGGGGCCCGCACAGCAGCACCAGTGCCAGCAGCTGCAA
CAGTAGCGGCAGTAATCACGCAGTCACGCCCGCCTTCGCCAGCACGTGGA
GTACCGAAATTGACGGCTTGCTATACGCGCCCACGACTACCACACAGGCT
GGATTAGGCTCGTGCATGGGTGTGCAGACTCATCGGGGACGGTACGCCGC
CTTTACTTGCCTACAGCCTGATGAGAACAGCCAAAACGCTGACGCGGAGG
CTCTCGGTATGCTCGTGGCGGCTTACCTGTCAGGATGCTCCACAACTCCC
CACAGCGCAAATGATGAAAATAGCACGGACCCCCCACGCCAATTTTTAAG
CGCGGGCGCTGGCCTAGAGGCTCTGCTACGTGTGAGGGATGGCGACCTGC
TGCTGGGGAGTAGCGACACAGATGAACATGTGCTGATTGTGGCTCACTTA
CGGCAAGGTCGCGTGGTCGGCGTGCAGGACCTTAATCTCCAATTTGGAGG
ATCGAGAGCCGATGGAGGCAGCGTATTGTTAAG back to top
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