|
Properties
Property Name | Value |
TranscriptId | 245671 |
Track | FilteredModels2 |
ProteinId | 245585 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_3 | supercontig | scaffold_3:1381497..1384197 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_569 ID=mRNA_569|Name=jgi.p|Nanoce1779_2|245585|organism=Nannochloropsis oceanica|type=mRNA|length=2515bp CACAGGCCGACGGCGCCCTGTCCGCGACACGCTCGATTACCACGATCACC CACAACGGCACTGTTCCTCCTTTCCCTATTCCGACGAGTACTCATCCTCC CAGACCCGGGCATCGCCACTTCCTCCCTTTCGTGGTGGAGGAGGAGTGGG AGGAAGGCGATCACAGCGGCAGCAGCAGCAGGTGGAGGGCTCCCCACCGC CTCTTGTGATGGAAGACGTGCTATCTCCGGCTTCATCGTTAGACCCTGTA GGCCCAAATAGCAAGACCTGGCTCTTTCGGGATTACTTCTGGATCGTGGC CAGCCTCGCCCTCTCCCCCCAAGCATACATGCTTGGCCTTCTCGGCATCG GCATCGGGCTCACCTGGCCCTGGTGCCTTGTCGCCTCCTTCCTCTCCGCC CTCCTTGCCGCGGTGCTAGCCTCACTCACTTGCCACGCCCCGAGCAAGTA TGGTGTCCCTCTTACTGTGGCTGCCCGTGCCTCTTTTGGTGTCTTTGGCT CCAAAATCTTCTCCCTCCTCCACCTCGCCATCGCCCTTCCCTGGGCTGCC TGGCTCCTCTGCATTTCCTCAGAAGGCCTTCGCGTCGGGATAACTCGCTT CCGCCCCTCCCTTGCCGATTGGGCCCCTCTCCGTTCCTCCCTCCTTCCCG CCGGCTACCCCTCCCTCCTCAGCCTCCTCTGCCTAGTGGCCACCGCCCTC CTCCTCCTGGTCTTACACATCTTCGGCAAAGTCCACGCGCTGCGATCCCT CGCCTCCACCGTCAGCACCACCCTCTTGTCCCTCTACTTAGGCCTGGCCA TATGGGCCACGCGCCTGGTCGGCTTCCAATCCGCCCTCGTCGCCTACAAC ACCAAGCTCCTTCCCGCCACTCTCCCTCCGTCTTCGCCCCTCTCCCTCTA CATCGCCCTCCCCCTCGTCGTCCTTGCCGGTCTCGGTTGCTGGTCCACGC CCCTCCTGCTCGGCTACGGAGACGTTGCCCGCTGGTGCTCTCTCCGATCT GCCCCGCGTCGCGCCCTCCTCCTCGTCTTCCCCCTACTTACCCCCCTCAC CACCTTCCTCGGCTGTCTCCTCATGGGGGCCATTGCCAAGGGCTGGACCA CCGAGGCCACCACTCCCACTGCCCTCCTTCGCTTCCTTTCCCCTCCCTTA ATGGCACTAATCGTCGGAATCTGCTTTTGCCTGGCTTTCCTCCACACCAC TCTCCAAGGCTACCTTCTCTCCGCCTCCCACGCCCTGACCGACGTCCTCG GCCCGCGCCTGCTCCGCAATAGCACCATCGCCGGCTCCTTTCTCGTTCTG GCGTCCTTTCTCTTGGCCCTTATCGCGCCCTCCACTTTGCTCGACAGCAG CGATGCCCGCTCGGGTACTGGGTCGCTCTCCCTCTCTTCCTGGTCCTTGA CCTCGGGCCTGGTCGCTGGAGCAATGTCGGGGGTTCTCCTTTCAGATTAT TTCTGGATGCGTCCCACGACCCTCCCGGTCGATAACTTATACAAGACTGT GCCGCGTCTACATGCTTGTGGTGTGAATGCAGGTGCGCTGGTGGCGGTGC TGCTGGCTTTTGTCGTGTTTGGATTGCGGAGCGTATTAAGGGCAGTCGTA CCATTGACCAGGGGAGGAAGGGGAGTTGAAGAAAAAGGGGAGGAAGAGGT GACTACAGTACTGGAGTTGTTGAATGCCATGTGCTTTTTCACGACATTTC CGGTCAGTTTCCTCGCGTATGCCCTGACCTACAGGTGCTTCACGGCCAGC CTTCCTTCCCCCCCGCCTTCCTTTACTTCCTCCTCCTCCTCCTCTCCTCC TGTCTTCCACTCGTCTGTGGAGCGGGGAGTGGGAATATCGGAAGGTAGGA CAGCCAACAGAGCCGAGAGACAGTATGCAACAGCGGCAGCCGCCACCGCT GCTGCTACGGCGGCCGGGGCCACCAGCAGCTGCAACCACCGCGAAACCTA CCCCCCCGGTACTCGACCTCCTCGTCTATCAGCACATCGCCCTTCCCCTT CCCAGCAATCTGCAAGCAGCCGGGCAACAGAGCAGCTAACGGCGACGCTT CATCAACTCCTGCTGCATTCACCACCGCCGGCAAGCGCACCTCCCGCGAC GTTGCATGAGGCTCCTCCTACAACAGGAATACTTCCTTCTAGTGCGCCTT TGTCCTTGCCTCGACAAGGGGGGCCTGAAAGCGGGGAAGGGAGAGCAAAA GGAGATATTGAAAGATATAGAGATGTGCCAACATCGCTAGGGCCAGGGAA TGGGCGTGACGAAGAGACCAAGATGGAGAAGGAGGGAGGTGACATTCTGT ATGCTTACGCAGTAAGGGTGCATGAAGTGGATGATGCGCGCAAATGAAAA AGTGGTGATGAGCATAATTAAGAACTACTTATCTCGTCAATAATTGAAAA AGACTGCAACCGCGTACAGACAGATTCTACGCAGTTGAATCATCTACAAA TGATTTTTCTGTTTTTTTTCTTAGAGCATTTAATAGGGTTATAGTACAAT GAGACTACAAATGAA back to topprotein sequence of jgi.p|Nanoce1779_2|245585 >mRNA_569-protein ID=mRNA_569-protein|Name=jgi.p|Nanoce1779_2|245585|organism=Nannochloropsis oceanica|type=polypeptide|length=713bp MEDVLSPASSLDPVGPNSKTWLFRDYFWIVASLALSPQAYMLGLLGIGIG LTWPWCLVASFLSALLAAVLASLTCHAPSKYGVPLTVAARASFGVFGSKI FSLLHLAIALPWAAWLLCISSEGLRVGITRFRPSLADWAPLRSSLLPAGY PSLLSLLCLVATALLLLVLHIFGKVHALRSLASTVSTTLLSLYLGLAIWA TRLVGFQSALVAYNTKLLPATLPPSSPLSLYIALPLVVLAGLGCWSTPLL LGYGDVARWCSLRSAPRRALLLVFPLLTPLTTFLGCLLMGAIAKGWTTEA TTPTALLRFLSPPLMALIVGICFCLAFLHTTLQGYLLSASHALTDVLGPR LLRNSTIAGSFLVLASFLLALIAPSTLLDSSDARSGTGSLSLSSWSLTSG LVAGAMSGVLLSDYFWMRPTTLPVDNLYKTVPRLHACGVNAGALVAVLLA FVVFGLRSVLRAVVPLTRGGRGVEEKGEEEVTTVLELLNAMCFFTTFPVS FLAYALTYRCFTASLPSPPPSFTSSSSSSPPVFHSSVERGVGISEGRTAN RAERQYATAAAATAAATAAGATSSCNHRETYPPGTRPPRLSAHRPSPSQQ SASSRATEQLTATLHQLLLHSPPPASAPPATLHEAPPTTGILPSSAPLSL PRQGGPESGEGRAKGDIERYRDVPTSLGPGNGRDEETKMEKEGGDILYAY AVRVHEVDDARK* back to topmRNA from alignment at scaffold_3:1381497..1384197+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_569 ID=mRNA_569|Name=jgi.p|Nanoce1779_2|245585|organism=Nannochloropsis oceanica|type=mRNA|length=2701bp|location=Sequence derived from alignment at scaffold_3:1381497..1384197+ (Nannochloropsis oceanica) CACAGGCCGACGGCGCCCTGTCCGCGACACGCTCGATTACCACGATCACC
CACAACGGCACTGTTCCTCCTTTCCCTATTCCGACGAGTACTCATCCTCC
CAGACCCGGGCATCGCCACTTCCTCCCTTTCGTGGTGGAGGAGGAGTGGG
AGGAAGGCGATCACAGCGGCAGCAGCAGCAGGTGGAGGGCTCCCCACCGC
CTCTTGTGATGGAAGACGTGCTATCTCCGGCTTCATCGTTAGACCCTGTA
GGCCCAAATAGCAAGACCTGGCTCTTTCGGGATGTACGTAATGGCTGGGG
TGTTATTGAGAGTATTTCATGATATCTGTCTATGTTGTGGCAATGTGCCA
GGTCTATGTTGTGGCAGTATAAGCTTTTTGAATTAACTCTTGGTGCTTTA
ATTCAAAACCTGACCAAGCTTGCTGTCTCATTCTTATTCCTCCCTCTCTC
CTTGCCTCGCTTTATGCAGTACTTCTGGATCGTGGCCAGCCTCGCCCTCT
CCCCCCAAGCATACATGCTTGGCCTTCTCGGCATCGGCATCGGGCTCACC
TGGCCCTGGTGCCTTGTCGCCTCCTTCCTCTCCGCCCTCCTTGCCGCGGT
GCTAGCCTCACTCACTTGCCACGCCCCGAGCAAGTATGGTGTCCCTCTTA
CTGTGGCTGCCCGTGCCTCTTTTGGTGTCTTTGGCTCCAAAATCTTCTCC
CTCCTCCACCTCGCCATCGCCCTTCCCTGGGCTGCCTGGCTCCTCTGCAT
TTCCTCAGAAGGCCTTCGCGTCGGGATAACTCGCTTCCGCCCCTCCCTTG
CCGATTGGGCCCCTCTCCGTTCCTCCCTCCTTCCCGCCGGCTACCCCTCC
CTCCTCAGCCTCCTCTGCCTAGTGGCCACCGCCCTCCTCCTCCTGGTCTT
ACACATCTTCGGCAAAGTCCACGCGCTGCGATCCCTCGCCTCCACCGTCA
GCACCACCCTCTTGTCCCTCTACTTAGGCCTGGCCATATGGGCCACGCGC
CTGGTCGGCTTCCAATCCGCCCTCGTCGCCTACAACACCAAGCTCCTTCC
CGCCACTCTCCCTCCGTCTTCGCCCCTCTCCCTCTACATCGCCCTCCCCC
TCGTCGTCCTTGCCGGTCTCGGTTGCTGGTCCACGCCCCTCCTGCTCGGC
TACGGAGACGTTGCCCGCTGGTGCTCTCTCCGATCTGCCCCGCGTCGCGC
CCTCCTCCTCGTCTTCCCCCTACTTACCCCCCTCACCACCTTCCTCGGCT
GTCTCCTCATGGGGGCCATTGCCAAGGGCTGGACCACCGAGGCCACCACT
CCCACTGCCCTCCTTCGCTTCCTTTCCCCTCCCTTAATGGCACTAATCGT
CGGAATCTGCTTTTGCCTGGCTTTCCTCCACACCACTCTCCAAGGCTACC
TTCTCTCCGCCTCCCACGCCCTGACCGACGTCCTCGGCCCGCGCCTGCTC
CGCAATAGCACCATCGCCGGCTCCTTTCTCGTTCTGGCGTCCTTTCTCTT
GGCCCTTATCGCGCCCTCCACTTTGCTCGACAGCAGCGATGCCCGCTCGG
GTACTGGGTCGCTCTCCCTCTCTTCCTGGTCCTTGACCTCGGGCCTGGTC
GCTGGAGCAATGTCGGGGGTTCTCCTTTCAGATTATTTCTGGATGCGTCC
CACGACCCTCCCGGTCGATAACTTATACAAGACTGTGCCGCGTCTACATG
CTTGTGGTGTGAATGCAGGTGCGCTGGTGGCGGTGCTGCTGGCTTTTGTC
GTGTTTGGATTGCGGAGCGTATTAAGGGCAGTCGTACCATTGACCAGGGG
AGGAAGGGGAGTTGAAGAAAAAGGGGAGGAAGAGGTGACTACAGTACTGG
AGTTGTTGAATGCCATGTGCTTTTTCACGACATTTCCGGTCAGTTTCCTC
GCGTATGCCCTGACCTACAGGTGCTTCACGGCCAGCCTTCCTTCCCCCCC
GCCTTCCTTTACTTCCTCCTCCTCCTCCTCTCCTCCTGTCTTCCACTCGT
CTGTGGAGCGGGGAGTGGGAATATCGGAAGGTAGGACAGCCAACAGAGCC
GAGAGACAGTATGCAACAGCGGCAGCCGCCACCGCTGCTGCTACGGCGGC
CGGGGCCACCAGCAGCTGCAACCACCGCGAAACCTACCCCCCCGGTACTC
GACCTCCTCGTCTATCAGCACATCGCCCTTCCCCTTCCCAGCAATCTGCA
AGCAGCCGGGCAACAGAGCAGCTAACGGCGACGCTTCATCAACTCCTGCT
GCATTCACCACCGCCGGCAAGCGCACCTCCCGCGACGTTGCATGAGGCTC
CTCCTACAACAGGAATACTTCCTTCTAGTGCGCCTTTGTCCTTGCCTCGA
CAAGGGGGGCCTGAAAGCGGGGAAGGGAGAGCAAAAGGAGATATTGAAAG
ATATAGAGATGTGCCAACATCGCTAGGGCCAGGGAATGGGCGTGACGAAG
AGACCAAGATGGAGAAGGAGGGAGGTGACATTCTGTATGCTTACGCAGTA
AGGGTGCATGAAGTGGATGATGCGCGCAAATGAAAAAGTGGTGATGAGCA
TAATTAAGAACTACTTATCTCGTCAATAATTGAAAAAGACTGCAACCGCG
TACAGACAGATTCTACGCAGTTGAATCATCTACAAATGATTTTTCTGTTT
TTTTTCTTAGAGCATTTAATAGGGTTATAGTACAATGAGACTACAAATGA
A back to topCoding sequence (CDS) from alignment at scaffold_3:1381497..1384197+ >mRNA_569 ID=mRNA_569|Name=jgi.p|Nanoce1779_2|245585|organism=Nannochloropsis oceanica|type=CDS|length=4278bp|location=Sequence derived from alignment at scaffold_3:1381497..1384197+ (Nannochloropsis oceanica) ATGGAAGACGTGCTATCTCCGGCTTCATCGTTAGACCCTGTAGGCCCAAA TAGCAAGACCTGGCTCTTTCGGGATTACTTCTGGATCGTGGCCAGCCTCG CCCTCTCCCCCCAAGCATACATGCTTGGCCTTCTCGGCATCGGCATCGGG CTCACCTGGCCCTGGTGCCTTGTCGCCTCCTTCCTCTCCGCCCTCCTTGC CGCGGTGCTAGCCTCACTCACTTGCCACGCCCCGAGCAAGTATGGTGTCC CTCTTACTGTGGCTGCCCGTGCCTCTTTTGGTGTCTTTGGCTCCAAAATC TTCTCCCTCCTCCACCTCGCCATCGCCCTTCCCTGGGCTGCCTGGCTCCT CTGCATTTCCTCAGAAGGCCTTCGCGTCGGGATAACTCGCTTCCGCCCCT CCCTTGCCGATTGGGCCCCTCTCCGTTCCTCCCTCCTTCCCGCCGGCTAC CCCTCCCTCCTCAGCCTCCTCTGCCTAGTGGCCACCGCCCTCCTCCTCCT GGTCTTACACATCTTCGGCAAAGTCCACGCGCTGCGATCCCTCGCCTCCA CCGTCAGCACCACCCTCTTGTCCCTCTACTTAGGCCTGGCCATATGGGCC ACGCGCCTGGTCGGCTTCCAATCCGCCCTCGTCGCCTACAACACCAAGCT CCTTCCCGCCACTCTCCCTCCGTCTTCGCCCCTCTCCCTCTACATCGCCC TCCCCCTCGTCGTCCTTGCCGGTCTCGGTTGCTGGTCCACGCCCCTCCTG CTCGGCTACGGAGACGTTGCCCGCTGGTGCTCTCTCCGATCTGCCCCGCG TCGCGCCCTCCTCCTCGTCTTCCCCCTACTTACCCCCCTCACCACCTTCC TCGGCTGTCTCCTCATGGGGGCCATTGCCAAGGGCTGGACCACCGAGGCC ACCACTCCCACTGCCCTCCTTCGCTTCCTTTCCCCTCCCTTAATGGCACT AATCGTCGGAATCTGCTTTTGCCTGGCTTTCCTCCACACCACTCTCCAAG GCTACCTTCTCTCCGCCTCCCACGCCCTGACCGACGTCCTCGGCCCGCGC CTGCTCCGCAATAGCACCATCGCCGGCTCCTTTCTCGTTCTGGCGTCCTT TCTCTTGGCCCTTATCGCGCCCTCCACTTTGCTCGACAGCAGCGATGCCC GCTCGGGTACTGGGTCGCTCTCCCTCTCTTCCTGGTCCTTGACCTCGGGC CTGGTCGCTGGAGCAATGTCGGGGGTTCTCCTTTCAGATTATTTCTGGAT GCGTCCCACGACCCTCCCGGTCGATAACTTATACAAGACTGTGCCGCGTC TACATGCTTGTGGTGTGAATGCAGGTGCGCTGGTGGCGGTGCTGCTGGCT TTTGTCGTGTTTGGATTGCGGAGCGTATTAAGGGCAGTCGTACCATTGAC CAGGGGAGGAAGGGGAGTTGAAGAAAAAGGGGAGGAAGAGGTGACTACAG TACTGGAGTTGTTGAATGCCATGTGCTTTTTCACGACATTTCCGGTCAGT TTCCTCGCGTATGCCCTGACCTACAGGTGCTTCACGGCCAGCCTTCCTTC CCCCCCGCCTTCCTTTACTTCCTCCTCCTCCTCCTCTCCTCCTGTCTTCC ACTCGTCTGTGGAGCGGGGAGTGGGAATATCGGAAGGTAGGACAGCCAAC AGAGCCGAGAGACAGTATGCAACAGCGGCAGCCGCCACCGCTGCTGCTAC GGCGGCCGGGGCCACCAGCAGCTGCAACCACCGCGAAACCTACCCCCCCG GTACTCGACCTCCTCGTCTATCAGCACATCGCCCTTCCCCTTCCCAGCAA TCTGCAAGCAGCCGGGCAACAGAGCAGCTAACGGCGACGCTTCATCAACT CCTGCTGCATTCACCACCGCCGGCAAGCGCACCTCCCGCGACGTTGCATG AGGCTCCTCCTACAACAGGAATACTTCCTTCTAGTGCGCCTTTGTCCTTG CCTCGACAAGGGGGGCCTGAAAGCGGGGAAGGGAGAGCAAAAGGAGATAT TGAAAGATATAGAGATGTGCCAACATCGCTAGGGCCAGGGAATGGGCGTG ACGAAGAGACCAAGATGGAGAAGGAGGGAGGTGACATTCTGTATGCTTAC GCAGTAAGGGTGCATGAAGTGGATGATGCGCGCAAATGAATGGAAGACGT GCTATCTCCGGCTTCATCGTTAGACCCTGTAGGCCCAAATAGCAAGACCT GGCTCTTTCGGGATTACTTCTGGATCGTGGCCAGCCTCGCCCTCTCCCCC CAAGCATACATGCTTGGCCTTCTCGGCATCGGCATCGGGCTCACCTGGCC CTGGTGCCTTGTCGCCTCCTTCCTCTCCGCCCTCCTTGCCGCGGTGCTAG CCTCACTCACTTGCCACGCCCCGAGCAAGTATGGTGTCCCTCTTACTGTG GCTGCCCGTGCCTCTTTTGGTGTCTTTGGCTCCAAAATCTTCTCCCTCCT CCACCTCGCCATCGCCCTTCCCTGGGCTGCCTGGCTCCTCTGCATTTCCT CAGAAGGCCTTCGCGTCGGGATAACTCGCTTCCGCCCCTCCCTTGCCGAT TGGGCCCCTCTCCGTTCCTCCCTCCTTCCCGCCGGCTACCCCTCCCTCCT CAGCCTCCTCTGCCTAGTGGCCACCGCCCTCCTCCTCCTGGTCTTACACA TCTTCGGCAAAGTCCACGCGCTGCGATCCCTCGCCTCCACCGTCAGCACC ACCCTCTTGTCCCTCTACTTAGGCCTGGCCATATGGGCCACGCGCCTGGT CGGCTTCCAATCCGCCCTCGTCGCCTACAACACCAAGCTCCTTCCCGCCA CTCTCCCTCCGTCTTCGCCCCTCTCCCTCTACATCGCCCTCCCCCTCGTC GTCCTTGCCGGTCTCGGTTGCTGGTCCACGCCCCTCCTGCTCGGCTACGG AGACGTTGCCCGCTGGTGCTCTCTCCGATCTGCCCCGCGTCGCGCCCTCC TCCTCGTCTTCCCCCTACTTACCCCCCTCACCACCTTCCTCGGCTGTCTC CTCATGGGGGCCATTGCCAAGGGCTGGACCACCGAGGCCACCACTCCCAC TGCCCTCCTTCGCTTCCTTTCCCCTCCCTTAATGGCACTAATCGTCGGAA TCTGCTTTTGCCTGGCTTTCCTCCACACCACTCTCCAAGGCTACCTTCTC TCCGCCTCCCACGCCCTGACCGACGTCCTCGGCCCGCGCCTGCTCCGCAA TAGCACCATCGCCGGCTCCTTTCTCGTTCTGGCGTCCTTTCTCTTGGCCC TTATCGCGCCCTCCACTTTGCTCGACAGCAGCGATGCCCGCTCGGGTACT GGGTCGCTCTCCCTCTCTTCCTGGTCCTTGACCTCGGGCCTGGTCGCTGG AGCAATGTCGGGGGTTCTCCTTTCAGATTATTTCTGGATGCGTCCCACGA CCCTCCCGGTCGATAACTTATACAAGACTGTGCCGCGTCTACATGCTTGT GGTGTGAATGCAGGTGCGCTGGTGGCGGTGCTGCTGGCTTTTGTCGTGTT TGGATTGCGGAGCGTATTAAGGGCAGTCGTACCATTGACCAGGGGAGGAA GGGGAGTTGAAGAAAAAGGGGAGGAAGAGGTGACTACAGTACTGGAGTTG TTGAATGCCATGTGCTTTTTCACGACATTTCCGGTCAGTTTCCTCGCGTA TGCCCTGACCTACAGGTGCTTCACGGCCAGCCTTCCTTCCCCCCCGCCTT CCTTTACTTCCTCCTCCTCCTCCTCTCCTCCTGTCTTCCACTCGTCTGTG GAGCGGGGAGTGGGAATATCGGAAGGTAGGACAGCCAACAGAGCCGAGAG ACAGTATGCAACAGCGGCAGCCGCCACCGCTGCTGCTACGGCGGCCGGGG CCACCAGCAGCTGCAACCACCGCGAAACCTACCCCCCCGGTACTCGACCT CCTCGTCTATCAGCACATCGCCCTTCCCCTTCCCAGCAATCTGCAAGCAG CCGGGCAACAGAGCAGCTAACGGCGACGCTTCATCAACTCCTGCTGCATT CACCACCGCCGGCAAGCGCACCTCCCGCGACGTTGCATGAGGCTCCTCCT ACAACAGGAATACTTCCTTCTAGTGCGCCTTTGTCCTTGCCTCGACAAGG GGGGCCTGAAAGCGGGGAAGGGAGAGCAAAAGGAGATATTGAAAGATATA GAGATGTGCCAACATCGCTAGGGCCAGGGAATGGGCGTGACGAAGAGACC AAGATGGAGAAGGAGGGAGGTGACATTCTGTATGCTTACGCAGTAAGGGT GCATGAAGTGGATGATGCGCGCAAATGA back to top
|