jgi.p|Nanoce1779_2|589863, mRNA_5657 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589863
Unique NamemRNA_5657
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1689
Alignment locationscaffold_11:235586..237274 -

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Properties
Property NameValue
TranscriptId589949
TrackFilteredModels2
ProteinId589863
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:235586..237274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589863gene_5657Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589863mRNA_5657-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5657CDS_5657Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5657 ID=mRNA_5657|Name=jgi.p|Nanoce1779_2|589863|organism=Nannochloropsis oceanica|type=mRNA|length=1689bp
AATCCGAGTTCCGACCTCCCGACTCTCTGAATCGAAAAACTAAGCCACAC
GCACACACGCACAATCTCAGGGTGGGCTTACAGTGTAACGCGTGCTTTCG
AGCCCCTGTTTATTGTGACTATCTTCTGTTTTCTGGATAGGAGGTGCTCC
ATGATTTGGTGGTAATGGGTAAGAAGGGATCTCAGAAGAAAGAACGCTCA
CGCTGCTGACAGTTTTTGTCTGTTCCACATTTTGATCGCTTGGCTCCAAC
AAAAAAGATAAACGCTGTGGGCTCAGTTGTCTCTTTTCTAACTGTGAGAA
TATACACAATGTGCACACAGGCATCAGGAGAAGAGGAGAACGCATCACCT
CCTGTGGCTCGGTCCATTTGAAGCTCGTCCCAAGTCCCCCTTCAACGTAT
GTCAGAACCCGATGTAAACAACGCCGCCATTTCAGCCCGGGAGCTCCTCC
ATGCCGCCGTTCTGGACATTGCCCAGGCACAATTCGACAAGTTGCCTAGG
CCGGAGGAATGCATCGTCCTTTTCTCAGGCGGGGTGGACTCTTCCGTCTC
GCTTCACCTCGCTGCCTCCTTGCTCGGCGTAAAGCATGCCATCACTGTGC
TTGTGCAGGATACTCCGGCCTCCGATGAGCCTTGGGCCGAGGCCACCGCA
GAAAATTTTCCTGGTGTGACTCATATTGTGCTGCGGCCCACGCTGGATGA
GCTTTTGGGCCAGGACATGCCGTTTTTGGTGCAAACGATTCATTCGTTCG
ACGGGATGGCTTTGCGGAATTCAGTCTGTGCCACGCATGGTCTTCGGCAC
GCGGCCTCCTTGGGATTCAAGTATGTCTTGACAGGCGATGCAGCGGACGA
ATTAATGGGTGGATACCGCTTTACGCACAGATATGATGACGAGGCGTGGA
CCCAACAACGCGCTACGATGGTTGCCAAATGGCATTTTGACAGCAGTGTG
GTCGGCGATGCTTTGGGCATGCGCGTCACCTCGCCCTTTCTCCATCCGCC
ATTTGTGGACTTCTGTTTGAAAAGTCTCAGAAAACTGGATTGTGTCGGTC
CCTATTCCTTGCGGGTGACTCCTTCCGCAGCCCTGGAGGACGGCGTCATC
ACAGGAAAGCTGCCGTTGCGTGGGGCTTTTCCCGAGCTCCTTTCTTCTTC
CCGACGTAAGGATCCTCAGGAAATTGGCTGTGGAACTACCATGTTGGGCG
CGGCTCCTTGGGCATCGCCGCCGCGTCAAGGTTACTTCGACACCCGGATT
GAGGACGCAGTGTTGGCGAGTGAAAAGGCGCGGATCGCAGATGAGTATGC
AATCAAAATCCGGGATAAAGAGCATTTGGCCTATTTCCACGAATTTGAGA
AGTTATTCGGAATCATCGAAGAAGTGGACGACGAGGAGAAGAAGCGAGTG
ACAAAAAAGGTGCTGAATGTGCCTAATAAACCGCGTCCGAATGACGACCC
TTGTCCAGCTTGTGGCTTCAAACTTGATACTCCCACGCAGACCTTTTGCT
TGGTATGCGGTCACTATGAAGAGACATTGCGGTTCCGAAAACAAGGAGAC
AAGGTTGGAGGGGTGGCTCGAACAGGGCAAGATGACGTTGAGGAGATCGA
GCAATAGTTCATTATATTGAATGATAAAACAACTCTCTGTGATGTGCGTT
TGTCTCCCTAAATGAATAACAATGTAGATAAAATGAGCC
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protein sequence of jgi.p|Nanoce1779_2|589863

>mRNA_5657-protein ID=mRNA_5657-protein|Name=jgi.p|Nanoce1779_2|589863|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp
MSEPDVNNAAISARELLHAAVLDIAQAQFDKLPRPEECIVLFSGGVDSSV
SLHLAASLLGVKHAITVLVQDTPASDEPWAEATAENFPGVTHIVLRPTLD
ELLGQDMPFLVQTIHSFDGMALRNSVCATHGLRHAASLGFKYVLTGDAAD
ELMGGYRFTHRYDDEAWTQQRATMVAKWHFDSSVVGDALGMRVTSPFLHP
PFVDFCLKSLRKLDCVGPYSLRVTPSAALEDGVITGKLPLRGAFPELLSS
SRRKDPQEIGCGTTMLGAAPWASPPRQGYFDTRIEDAVLASEKARIADEY
AIKIRDKEHLAYFHEFEKLFGIIEEVDDEEKKRVTKKVLNVPNKPRPNDD
PCPACGFKLDTPTQTFCLVCGHYEETLRFRKQGDKVGGVARTGQDDVEEI
EQ*
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mRNA from alignment at scaffold_11:235586..237274-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5657 ID=mRNA_5657|Name=jgi.p|Nanoce1779_2|589863|organism=Nannochloropsis oceanica|type=mRNA|length=1689bp|location=Sequence derived from alignment at scaffold_11:235586..237274- (Nannochloropsis oceanica)
AATCCGAGTTCCGACCTCCCGACTCTCTGAATCGAAAAACTAAGCCACAC
GCACACACGCACAATCTCAGGGTGGGCTTACAGTGTAACGCGTGCTTTCG
AGCCCCTGTTTATTGTGACTATCTTCTGTTTTCTGGATAGGAGGTGCTCC
ATGATTTGGTGGTAATGGGTAAGAAGGGATCTCAGAAGAAAGAACGCTCA
CGCTGCTGACAGTTTTTGTCTGTTCCACATTTTGATCGCTTGGCTCCAAC
AAAAAAGATAAACGCTGTGGGCTCAGTTGTCTCTTTTCTAACTGTGAGAA
TATACACAATGTGCACACAGGCATCAGGAGAAGAGGAGAACGCATCACCT
CCTGTGGCTCGGTCCATTTGAAGCTCGTCCCAAGTCCCCCTTCAACGTAT
GTCAGAACCCGATGTAAACAACGCCGCCATTTCAGCCCGGGAGCTCCTCC
ATGCCGCCGTTCTGGACATTGCCCAGGCACAATTCGACAAGTTGCCTAGG
CCGGAGGAATGCATCGTCCTTTTCTCAGGCGGGGTGGACTCTTCCGTCTC
GCTTCACCTCGCTGCCTCCTTGCTCGGCGTAAAGCATGCCATCACTGTGC
TTGTGCAGGATACTCCGGCCTCCGATGAGCCTTGGGCCGAGGCCACCGCA
GAAAATTTTCCTGGTGTGACTCATATTGTGCTGCGGCCCACGCTGGATGA
GCTTTTGGGCCAGGACATGCCGTTTTTGGTGCAAACGATTCATTCGTTCG
ACGGGATGGCTTTGCGGAATTCAGTCTGTGCCACGCATGGTCTTCGGCAC
GCGGCCTCCTTGGGATTCAAGTATGTCTTGACAGGCGATGCAGCGGACGA
ATTAATGGGTGGATACCGCTTTACGCACAGATATGATGACGAGGCGTGGA
CCCAACAACGCGCTACGATGGTTGCCAAATGGCATTTTGACAGCAGTGTG
GTCGGCGATGCTTTGGGCATGCGCGTCACCTCGCCCTTTCTCCATCCGCC
ATTTGTGGACTTCTGTTTGAAAAGTCTCAGAAAACTGGATTGTGTCGGTC
CCTATTCCTTGCGGGTGACTCCTTCCGCAGCCCTGGAGGACGGCGTCATC
ACAGGAAAGCTGCCGTTGCGTGGGGCTTTTCCCGAGCTCCTTTCTTCTTC
CCGACGTAAGGATCCTCAGGAAATTGGCTGTGGAACTACCATGTTGGGCG
CGGCTCCTTGGGCATCGCCGCCGCGTCAAGGTTACTTCGACACCCGGATT
GAGGACGCAGTGTTGGCGAGTGAAAAGGCGCGGATCGCAGATGAGTATGC
AATCAAAATCCGGGATAAAGAGCATTTGGCCTATTTCCACGAATTTGAGA
AGTTATTCGGAATCATCGAAGAAGTGGACGACGAGGAGAAGAAGCGAGTG
ACAAAAAAGGTGCTGAATGTGCCTAATAAACCGCGTCCGAATGACGACCC
TTGTCCAGCTTGTGGCTTCAAACTTGATACTCCCACGCAGACCTTTTGCT
TGGTATGCGGTCACTATGAAGAGACATTGCGGTTCCGAAAACAAGGAGAC
AAGGTTGGAGGGGTGGCTCGAACAGGGCAAGATGACGTTGAGGAGATCGA
GCAATAGTTCATTATATTGAATGATAAAACAACTCTCTGTGATGTGCGTT
TGTCTCCCTAAATGAATAACAATGTAGATAAAATGAGCC
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Coding sequence (CDS) from alignment at scaffold_11:235586..237274-

>mRNA_5657 ID=mRNA_5657|Name=jgi.p|Nanoce1779_2|589863|organism=Nannochloropsis oceanica|type=CDS|length=1209bp|location=Sequence derived from alignment at scaffold_11:235586..237274- (Nannochloropsis oceanica)
ATGTCAGAACCCGATGTAAACAACGCCGCCATTTCAGCCCGGGAGCTCCT
CCATGCCGCCGTTCTGGACATTGCCCAGGCACAATTCGACAAGTTGCCTA
GGCCGGAGGAATGCATCGTCCTTTTCTCAGGCGGGGTGGACTCTTCCGTC
TCGCTTCACCTCGCTGCCTCCTTGCTCGGCGTAAAGCATGCCATCACTGT
GCTTGTGCAGGATACTCCGGCCTCCGATGAGCCTTGGGCCGAGGCCACCG
CAGAAAATTTTCCTGGTGTGACTCATATTGTGCTGCGGCCCACGCTGGAT
GAGCTTTTGGGCCAGGACATGCCGTTTTTGGTGCAAACGATTCATTCGTT
CGACGGGATGGCTTTGCGGAATTCAGTCTGTGCCACGCATGGTCTTCGGC
ACGCGGCCTCCTTGGGATTCAAGTATGTCTTGACAGGCGATGCAGCGGAC
GAATTAATGGGTGGATACCGCTTTACGCACAGATATGATGACGAGGCGTG
GACCCAACAACGCGCTACGATGGTTGCCAAATGGCATTTTGACAGCAGTG
TGGTCGGCGATGCTTTGGGCATGCGCGTCACCTCGCCCTTTCTCCATCCG
CCATTTGTGGACTTCTGTTTGAAAAGTCTCAGAAAACTGGATTGTGTCGG
TCCCTATTCCTTGCGGGTGACTCCTTCCGCAGCCCTGGAGGACGGCGTCA
TCACAGGAAAGCTGCCGTTGCGTGGGGCTTTTCCCGAGCTCCTTTCTTCT
TCCCGACGTAAGGATCCTCAGGAAATTGGCTGTGGAACTACCATGTTGGG
CGCGGCTCCTTGGGCATCGCCGCCGCGTCAAGGTTACTTCGACACCCGGA
TTGAGGACGCAGTGTTGGCGAGTGAAAAGGCGCGGATCGCAGATGAGTAT
GCAATCAAAATCCGGGATAAAGAGCATTTGGCCTATTTCCACGAATTTGA
GAAGTTATTCGGAATCATCGAAGAAGTGGACGACGAGGAGAAGAAGCGAG
TGACAAAAAAGGTGCTGAATGTGCCTAATAAACCGCGTCCGAATGACGAC
CCTTGTCCAGCTTGTGGCTTCAAACTTGATACTCCCACGCAGACCTTTTG
CTTGGTATGCGGTCACTATGAAGAGACATTGCGGTTCCGAAAACAAGGAG
ACAAGGTTGGAGGGGTGGCTCGAACAGGGCAAGATGACGTTGAGGAGATC
GAGCAATAG
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Synonyms
Publications