jgi.p|Nanoce1779_2|245154, mRNA_563 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|245154
Unique Name	mRNA_563
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2304
Alignment location	scaffold_3:1365589..1367892 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	245240
Track	FilteredModels2
ProteinId	245154

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1365589..1367892 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|245154	gene_563	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|245154	mRNA_563-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_563	CDS_563	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1365589..1367892-
coding sequence from alignment at scaffold_3:1365589..1367892-

mRNA sequence

>mRNA_563 ID=mRNA_563|Name=jgi.p|Nanoce1779_2|245154|organism=Nannochloropsis oceanica|type=mRNA|length=2304bp
TCATGTAGATATATGTGTGTGGATGGAATGAGCTGCTGCGTTACGAGGGC
TGTCGTAGATACAGGAACGCACACCACACGTTTCCCAGGCGATTGCCTCT
CGATTTGCGGGGCCCTACATAGGACCCCTTGCTCCTCATCCTACAGCGTC
ATCCACCAGCACGTGGTCCTCGCTCCTCACACTAACACTGCCTGTCGCCA
AAAAAAAAAGTTTTTCCACTACCCCTATTTTGGGCAACCCTCCAAATCCT
TTGTAGACACACACAATCCACATCAACCAACCCACCACGTATTTGATTCA
TCTCAAAATGACCACAGGTGTTGCAGGGTAACACATCGTCCAGGCATCAG
CCGAGAGAGGCTGCAAGGAAGCGCTCACCCATCATGTCGACGCCTCCAGG
CAGGAGCAACACTACCGCATTGGCCAGAATCAGCAGCGACGAACAATGGC
TACGTGACTTTCGGGAGGCGAAGCAGTCCATCCTGACATCGACGACGGCG
CATAACCTCGCCACATCCCCTCCGCCACGACGCACAGCAGAATTGAATTT
GGGCGATGGACAGCTTCAGCGCGAGATCACGTCCATTGTCGAGATGCCCC
GACTGGAAAGGGCAGCAGCTGCATCAGAACGAAAAGGAGATGATGACCCG
TCTAAATGGGTAGATGAACAGAGCGATGTACGGGTGAATTGCGTGCCAGC
AGCCGACCCTTTGTCGCCATCGGGAGTCTCGTCTCGGGCCTCCTCGCCCA
ACAGCACTTCCTCGTCTGAGGAAAACAACGACGACGAAAGGAGCGCCAGC
AGCTGCCGCAGTAGAAGTCGAGCAAACCCTATAACTAGCACTCCGTCTCT
GCACTCTTCTTCTTCTTCCTCCTCCTCCTCACCTTCCTCTTCTTCATCCT
CCTCTTTTTCTTCCCCTCCCCAGTCGCAATTTTTCGATGCCTCGATGGCG
AACAAGCCCTTCTCCTTCGCCGAGGAATTGCAGTGGCCCCGAAAACAAGA
CCAGCAGTTCTGGCAACATCAGCCGCAGGAGCAGCCTCAGCCAGCCCAAA
CATTTTCGATACCGTTTACGCGTGCAGCAACCACTCCTGCTGCCGCCCAT
TCGACCTCCTTGCTCGCCATGCTGCAGGAGGAAAAGGAGCAAGGCCGGCA
GCAAGCAGCCCGCATCAAGGAGTTAGAGCTTGCTTGTGTCGAAATCCAGC
AGGAGTGTCAGGTGGCAATTGCAGCGGCCCGCTTGGAGAGTCACGAGCTC
AAGTGCATGCTGCGGCGGATGGCCTCTGAGAGTACCTTCGCCGACGTCTT
CCAGGTCTACGAGGCACACATTGCCCGCGTGGAGCAGGAGGTGCAAATAT
TGCGGGCGCGCAACATACACCTGGAGGAGCGTCGTCAGCAGCATCAATCT
CACCAGCAGCAGCAGGAGCAGCAGCGGCAGCAGGAGGAGGAGGAGAAGGA
GGAGGAGGAAGAGGAGGAGGGCCTTCAACCGACGTCCGTAGGGCAGAACG
ATGATGGAGAAGGCCATGACCACAGCATCAACGACGGTGAGGAGGATAGA
GACGGTAGTATCCACCATAACGGCAACTCGTCTCTGGAGCGTCGAGGGCT
TCTCTCGGTGGGCACGACTGCGGCAGCCAAACTCAGGCAGAGTCTGAAGG
CCAGGTCCGATGTCGTCTACCACCACGGCAAGTGCCGAGGCCACGAATGC
AAACCCTCCAGCAGCACAAATGCCAAGTCCAAGCACAGCATCAGCGGAGC
CGTGAATGGCACACCAAAGCAGTATGAGGCCGGTAGATCCACTGCCACAG
CATCGATGACTGCTTTGCGATGCAGAATCAAGGACTTGCAGCGCCAGGTG
GATGACTTCAAAAAGGAAACAGGAGAGCTGCGGCGACGGGAGCGACAATC
TTTGGTGCAAAAGCGGGTAGTGGAGACGACATGGGCCCGCGTGATGAAGG
TCCAGGCCATGGCCAAGGGGCTGGAGGGCAGCCTGGCTTCGAGTAGGTTG
GAGGGTGCTCGTGCAGAGGCTCGGCTAGAGGAGGCAGAGGAGGAGATTCG
AGTACTACGCCAGAGGGAGGCTGCCTTGGTTCTGGATCGTGACAAGTTAT
TGCTGGAACTCGATCTCCTGCACCGGAAACAGCTCGGTGGCGGTGGCAAC
GGCCCCTCGTCCCGGCAAGGTGGTGAGAGTAGGGAGACGAGATAAATTGA
ATCGAATGTTTGATAACGTATATGTGTAACAGAGAAAAGCTAGAGACGAA
AAAATAAGGAGTTGCTGTACGTACTGTTGTGAATTAACAAAAAAGAAGAG
ATTC

protein sequence of jgi.p|Nanoce1779_2|245154

>mRNA_563-protein ID=mRNA_563-protein|Name=jgi.p|Nanoce1779_2|245154|organism=Nannochloropsis oceanica|type=polypeptide|length=604bp
MSTPPGRSNTTALARISSDEQWLRDFREAKQSILTSTTAHNLATSPPPRR
TAELNLGDGQLQREITSIVEMPRLERAAAASERKGDDDPSKWVDEQSDVR
VNCVPAADPLSPSGVSSRASSPNSTSSSEENNDDERSASSCRSRSRANPI
TSTPSLHSSSSSSSSSPSSSSSSSFSSPPQSQFFDASMANKPFSFAEELQ
WPRKQDQQFWQHQPQEQPQPAQTFSIPFTRAATTPAAAHSTSLLAMLQEE
KEQGRQQAARIKELELACVEIQQECQVAIAAARLESHELKCMLRRMASES
TFADVFQVYEAHIARVEQEVQILRARNIHLEERRQQHQSHQQQQEQQRQQ
EEEEKEEEEEEEGLQPTSVGQNDDGEGHDHSINDGEEDRDGSIHHNGNSS
LERRGLLSVGTTAAAKLRQSLKARSDVVYHHGKCRGHECKPSSSTNAKSK
HSISGAVNGTPKQYEAGRSTATASMTALRCRIKDLQRQVDDFKKETGELR
RRERQSLVQKRVVETTWARVMKVQAMAKGLEGSLASSRLEGARAEARLEE
AEEEIRVLRQREAALVLDRDKLLLELDLLHRKQLGGGGNGPSSRQGGESR
ETR*

mRNA from alignment at scaffold_3:1365589..1367892-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_563 ID=mRNA_563|Name=jgi.p|Nanoce1779_2|245154|organism=Nannochloropsis oceanica|type=mRNA|length=2304bp|location=Sequence derived from alignment at scaffold_3:1365589..1367892- (Nannochloropsis oceanica)
TCATGTAGATATATGTGTGTGGATGGAATGAGCTGCTGCGTTACGAGGGC
TGTCGTAGATACAGGAACGCACACCACACGTTTCCCAGGCGATTGCCTCT
CGATTTGCGGGGCCCTACATAGGACCCCTTGCTCCTCATCCTACAGCGTC
ATCCACCAGCACGTGGTCCTCGCTCCTCACACTAACACTGCCTGTCGCCA
AAAAAAAAAGTTTTTCCACTACCCCTATTTTGGGCAACCCTCCAAATCCT
TTGTAGACACACACAATCCACATCAACCAACCCACCACGTATTTGATTCA
TCTCAAAATGACCACAGGTGTTGCAGGGTAACACATCGTCCAGGCATCAG
CCGAGAGAGGCTGCAAGGAAGCGCTCACCCATCATGTCGACGCCTCCAGG
CAGGAGCAACACTACCGCATTGGCCAGAATCAGCAGCGACGAACAATGGC
TACGTGACTTTCGGGAGGCGAAGCAGTCCATCCTGACATCGACGACGGCG
CATAACCTCGCCACATCCCCTCCGCCACGACGCACAGCAGAATTGAATTT
GGGCGATGGACAGCTTCAGCGCGAGATCACGTCCATTGTCGAGATGCCCC
GACTGGAAAGGGCAGCAGCTGCATCAGAACGAAAAGGAGATGATGACCCG
TCTAAATGGGTAGATGAACAGAGCGATGTACGGGTGAATTGCGTGCCAGC
AGCCGACCCTTTGTCGCCATCGGGAGTCTCGTCTCGGGCCTCCTCGCCCA
ACAGCACTTCCTCGTCTGAGGAAAACAACGACGACGAAAGGAGCGCCAGC
AGCTGCCGCAGTAGAAGTCGAGCAAACCCTATAACTAGCACTCCGTCTCT
GCACTCTTCTTCTTCTTCCTCCTCCTCCTCACCTTCCTCTTCTTCATCCT
CCTCTTTTTCTTCCCCTCCCCAGTCGCAATTTTTCGATGCCTCGATGGCG
AACAAGCCCTTCTCCTTCGCCGAGGAATTGCAGTGGCCCCGAAAACAAGA
CCAGCAGTTCTGGCAACATCAGCCGCAGGAGCAGCCTCAGCCAGCCCAAA
CATTTTCGATACCGTTTACGCGTGCAGCAACCACTCCTGCTGCCGCCCAT
TCGACCTCCTTGCTCGCCATGCTGCAGGAGGAAAAGGAGCAAGGCCGGCA
GCAAGCAGCCCGCATCAAGGAGTTAGAGCTTGCTTGTGTCGAAATCCAGC
AGGAGTGTCAGGTGGCAATTGCAGCGGCCCGCTTGGAGAGTCACGAGCTC
AAGTGCATGCTGCGGCGGATGGCCTCTGAGAGTACCTTCGCCGACGTCTT
CCAGGTCTACGAGGCACACATTGCCCGCGTGGAGCAGGAGGTGCAAATAT
TGCGGGCGCGCAACATACACCTGGAGGAGCGTCGTCAGCAGCATCAATCT
CACCAGCAGCAGCAGGAGCAGCAGCGGCAGCAGGAGGAGGAGGAGAAGGA
GGAGGAGGAAGAGGAGGAGGGCCTTCAACCGACGTCCGTAGGGCAGAACG
ATGATGGAGAAGGCCATGACCACAGCATCAACGACGGTGAGGAGGATAGA
GACGGTAGTATCCACCATAACGGCAACTCGTCTCTGGAGCGTCGAGGGCT
TCTCTCGGTGGGCACGACTGCGGCAGCCAAACTCAGGCAGAGTCTGAAGG
CCAGGTCCGATGTCGTCTACCACCACGGCAAGTGCCGAGGCCACGAATGC
AAACCCTCCAGCAGCACAAATGCCAAGTCCAAGCACAGCATCAGCGGAGC
CGTGAATGGCACACCAAAGCAGTATGAGGCCGGTAGATCCACTGCCACAG
CATCGATGACTGCTTTGCGATGCAGAATCAAGGACTTGCAGCGCCAGGTG
GATGACTTCAAAAAGGAAACAGGAGAGCTGCGGCGACGGGAGCGACAATC
TTTGGTGCAAAAGCGGGTAGTGGAGACGACATGGGCCCGCGTGATGAAGG
TCCAGGCCATGGCCAAGGGGCTGGAGGGCAGCCTGGCTTCGAGTAGGTTG
GAGGGTGCTCGTGCAGAGGCTCGGCTAGAGGAGGCAGAGGAGGAGATTCG
AGTACTACGCCAGAGGGAGGCTGCCTTGGTTCTGGATCGTGACAAGTTAT
TGCTGGAACTCGATCTCCTGCACCGGAAACAGCTCGGTGGCGGTGGCAAC
GGCCCCTCGTCCCGGCAAGGTGGTGAGAGTAGGGAGACGAGATAAATTGA
ATCGAATGTTTGATAACGTATATGTGTAACAGAGAAAAGCTAGAGACGAA
AAAATAAGGAGTTGCTGTACGTACTGTTGTGAATTAACAAAAAAGAAGAG
ATTC

Coding sequence (CDS) from alignment at scaffold_3:1365589..1367892-

>mRNA_563 ID=mRNA_563|Name=jgi.p|Nanoce1779_2|245154|organism=Nannochloropsis oceanica|type=CDS|length=1812bp|location=Sequence derived from alignment at scaffold_3:1365589..1367892- (Nannochloropsis oceanica)
ATGTCGACGCCTCCAGGCAGGAGCAACACTACCGCATTGGCCAGAATCAG
CAGCGACGAACAATGGCTACGTGACTTTCGGGAGGCGAAGCAGTCCATCC
TGACATCGACGACGGCGCATAACCTCGCCACATCCCCTCCGCCACGACGC
ACAGCAGAATTGAATTTGGGCGATGGACAGCTTCAGCGCGAGATCACGTC
CATTGTCGAGATGCCCCGACTGGAAAGGGCAGCAGCTGCATCAGAACGAA
AAGGAGATGATGACCCGTCTAAATGGGTAGATGAACAGAGCGATGTACGG
GTGAATTGCGTGCCAGCAGCCGACCCTTTGTCGCCATCGGGAGTCTCGTC
TCGGGCCTCCTCGCCCAACAGCACTTCCTCGTCTGAGGAAAACAACGACG
ACGAAAGGAGCGCCAGCAGCTGCCGCAGTAGAAGTCGAGCAAACCCTATA
ACTAGCACTCCGTCTCTGCACTCTTCTTCTTCTTCCTCCTCCTCCTCACC
TTCCTCTTCTTCATCCTCCTCTTTTTCTTCCCCTCCCCAGTCGCAATTTT
TCGATGCCTCGATGGCGAACAAGCCCTTCTCCTTCGCCGAGGAATTGCAG
TGGCCCCGAAAACAAGACCAGCAGTTCTGGCAACATCAGCCGCAGGAGCA
GCCTCAGCCAGCCCAAACATTTTCGATACCGTTTACGCGTGCAGCAACCA
CTCCTGCTGCCGCCCATTCGACCTCCTTGCTCGCCATGCTGCAGGAGGAA
AAGGAGCAAGGCCGGCAGCAAGCAGCCCGCATCAAGGAGTTAGAGCTTGC
TTGTGTCGAAATCCAGCAGGAGTGTCAGGTGGCAATTGCAGCGGCCCGCT
TGGAGAGTCACGAGCTCAAGTGCATGCTGCGGCGGATGGCCTCTGAGAGT
ACCTTCGCCGACGTCTTCCAGGTCTACGAGGCACACATTGCCCGCGTGGA
GCAGGAGGTGCAAATATTGCGGGCGCGCAACATACACCTGGAGGAGCGTC
GTCAGCAGCATCAATCTCACCAGCAGCAGCAGGAGCAGCAGCGGCAGCAG
GAGGAGGAGGAGAAGGAGGAGGAGGAAGAGGAGGAGGGCCTTCAACCGAC
GTCCGTAGGGCAGAACGATGATGGAGAAGGCCATGACCACAGCATCAACG
ACGGTGAGGAGGATAGAGACGGTAGTATCCACCATAACGGCAACTCGTCT
CTGGAGCGTCGAGGGCTTCTCTCGGTGGGCACGACTGCGGCAGCCAAACT
CAGGCAGAGTCTGAAGGCCAGGTCCGATGTCGTCTACCACCACGGCAAGT
GCCGAGGCCACGAATGCAAACCCTCCAGCAGCACAAATGCCAAGTCCAAG
CACAGCATCAGCGGAGCCGTGAATGGCACACCAAAGCAGTATGAGGCCGG
TAGATCCACTGCCACAGCATCGATGACTGCTTTGCGATGCAGAATCAAGG
ACTTGCAGCGCCAGGTGGATGACTTCAAAAAGGAAACAGGAGAGCTGCGG
CGACGGGAGCGACAATCTTTGGTGCAAAAGCGGGTAGTGGAGACGACATG
GGCCCGCGTGATGAAGGTCCAGGCCATGGCCAAGGGGCTGGAGGGCAGCC
TGGCTTCGAGTAGGTTGGAGGGTGCTCGTGCAGAGGCTCGGCTAGAGGAG
GCAGAGGAGGAGATTCGAGTACTACGCCAGAGGGAGGCTGCCTTGGTTCT
GGATCGTGACAAGTTATTGCTGGAACTCGATCTCCTGCACCGGAAACAGC
TCGGTGGCGGTGGCAACGGCCCCTCGTCCCGGCAAGGTGGTGAGAGTAGG
GAGACGAGATAA

Synonyms

Publications