Properties
| Property Name | Value |
|---|
| TranscriptId | 555496 |
| Track | FilteredModels2 |
| ProteinId | 555410 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:145905..148539 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5620 ID=mRNA_5620|Name=jgi.p|Nanoce1779_2|555410|organism=Nannochloropsis oceanica|type=mRNA|length=2359bp
CCTGATTTGTGTAACTTCAAGTACGGCGAACTTTTAATCACAGTGCTGTT
TTATTTGCTACAAACCCTTTTGATTGTTTATTGGGCGTTGCGATATGGCG
AATTTAGTTTCAAGAGCATGGGAATTGCCTTCGGAAAGGCTGCGATGACC
AATTTGATGTTGTGCTATCTACCTGTCAACAAGACTTCGCTTTGGACTTA
CATCTTTGGCATTTCTTTTGAGCGTGCGGTCAAATTTCATCGACATCTCT
CTTATCTAATGCTGGCATATTCAATTCTTCATCTTGGCCTCCTTATCGAA
ATAAATCCTGTCTGGGGGCTTCCTCCTAAGCTTAATGGCGTAGTCATGGC
CTATGGACTATGGGCTCTCATTGCTTTCCTCATCATGACTGTCACTGCGT
TACTTCGTCGCTGGCACTTTGAGTTATTCCGATATACGCACTACCTTTTT
ATAGCGGGTACCGTGCTCACTCTTCTACACGTGCCCAAGGCTCTACCCTA
TATGTGGATGCCCTGTCTCGTGCACGCGGCAGATTTTTTTTGGCGCTGGT
GGGGCGTGCTACGGGACATATCTGTTGCCAAGCTTTCCATCTTTCCTGAC
CACATTGCCCAGCTGGATGTCTTTTCTCAAGTACCTGGCGGGCCCAAGAG
CATTCTCAGTAGCTGCACTGGCCGCCAAGAACGCAAGTGGACCAAGCCCA
TTGAGCCTGGTAGCTATGTTTTCGTCTGTATCCCCCGAATATCTCCTTGG
CAATGGCACCCCATCAGCATTTCGACAGCCGGCATGAGCGTGCTTGGCGG
TAGTGCGATAGAGCCCTCTTACAGCTTGCACATTAAGGGCCTCGGGGATG
GCACGTGGACAGACCGCATCTATCGTCTGGCCGCGTCCAGGTCACTAACT
GTTACACCTATATCAGAGGACATGGTGGATGGGCCTTACGGGAAGCTCTC
CATAGATTTGAGCAACTACCGCAAGCTGGTGCTGGTGGCTGGCGGGATCG
GCATCACTCCCATGACAACAACCCTTTCGTTTATCAGCCATCAGAAACGT
CACCATCAATTGCCTTTGCTTGAGAGCGTCATTCTTGTGTGGGCTGTCCG
AAACAAAACGCTAGTGGATGGATTTATCCCTTTTTTGGATCAGACCTTCT
CGCAGCTCAATTCTCTGGAAACGCCTAGCTTCTTCAAGGTGGAATTGTAT
GTGAGTATAGGATCGAAGTCCGCGGCTGTTCCTGCTGCAGCAGACGCCGC
TGGTAGTGCTAGAGTCATTGTCTCAGTTGGTAATGGTGACGAAAACTCTG
AGATGACGCGAGAGGCCGAGATGAATGGTGCATCCGCTGAAGTGGAAAAG
AGAGAGGTGAAGCAAACGATACGCATAGGAAATAAGAGCCCTGAAGAGGG
GAGTGGGACAGCGGTGAGTGCGGCGCCGAGCCTCTTTAATATCCATTATG
AACGGCCGGATATTGCGAGGGTGATGGAAGGGTTGTTTGGAGAGAAGGAA
AAAGTAAGCGAGGAAGTGGGTGTGCTGGTGTGTGCATCGAAAGCTCTTTT
GTTTGAAGTGCAGCGACAGTGCGTGCGCTGGGACGTTGACTTGCACGCAG
AGGAATTCGCTTGGTAGGATTGATGAAAAAGGTTATAAAGAGAGGGTTGT
GGAGAATGACTTAAATTGGGTATGCGCGCTCGGCGTAATCTAAGGTGGTA
CGTAGATCGAAAACAAAATTAGGAAAATAGAGAGAGTGGAGAGAGTGGGG
AAAAAAGTGGAGAGAGAGAAGATGACTATGTACACGGTACATGATACGAG
GTGTCAACCAGATTAATATAAGGCATGATAACCAGAAAGAAGAAGTACCA
CAGACAAGTGTATAATCGGCAATTTGGAGAGGGTTCCACCTTAGAGAGAC
ATGAGAAAAAGGTTGTGTGCCAAATAGAAGTGAAAAAATGGTGAGGTCAA
TGATTGACAGACATGAAGGAGAGAAGAAGTGAGAGACAAAGGGAGTGGTC
TGAGGGAAAGCACAAAGAAGGATACAGAGAGAGGGTCAAACTGTCTTACG
CCCGTCAAGTGTGATTTCGTGGTTGAGTCTTCCAGACGTTGTCATATGTG
TGTGCATAACGACCGCCCAGAATATTTTGGTGTCAGTAAAGCACGAACTC
AGTTTTACATATGCTTTCAAACAGACGAACGATCAAAAAGTCATGTCATG
CGCTTGAAGATGAAAATTATTAGAATGGCAGGCTACCTTAACATTAGTTT
TCATAGCGGGCAGAACAATGGTGTTGAACTTCCCCCGCTAGGTCACTACA
GACCATTACGCAGCAAACGCCATGACACTTCCTCAGTAACATGGCAGATA
GATCTCAGC back to topprotein sequence of jgi.p|Nanoce1779_2|555410 >mRNA_5620-protein ID=mRNA_5620-protein|Name=jgi.p|Nanoce1779_2|555410|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MGIAFGKAAMTNLMLCYLPVNKTSLWTYIFGISFERAVKFHRHLSYLMLA
YSILHLGLLIEINPVWGLPPKLNGVVMAYGLWALIAFLIMTVTALLRRWH
FELFRYTHYLFIAGTVLTLLHVPKALPYMWMPCLVHAADFFWRWWGVLRD
ISVAKLSIFPDHIAQLDVFSQVPGGPKSILSSCTGRQERKWTKPIEPGSY
VFVCIPRISPWQWHPISISTAGMSVLGGSAIEPSYSLHIKGLGDGTWTDR
IYRLAASRSLTVTPISEDMVDGPYGKLSIDLSNYRKLVLVAGGIGITPMT
TTLSFISHQKRHHQLPLLESVILVWAVRNKTLVDGFIPFLDQTFSQLNSL
ETPSFFKVELYVSIGSKSAAVPAAADAAGSARVIVSVGNGDENSEMTREA
EMNGASAEVEKREVKQTIRIGNKSPEEGSGTAVSAAPSLFNIHYERPDIA
RVMEGLFGEKEKVSEEVGVLVCASKALLFEVQRQCVRWDVDLHAEEFAW* back to topmRNA from alignment at scaffold_11:145905..148539- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5620 ID=mRNA_5620|Name=jgi.p|Nanoce1779_2|555410|organism=Nannochloropsis oceanica|type=mRNA|length=2635bp|location=Sequence derived from alignment at scaffold_11:145905..148539- (Nannochloropsis oceanica)
CCTGATTTGTGTAACTTCAAGTACGGCGAACTTTTAATCACAGTGCTGTT
TTATTTGCTACAAACCCTTTTGATTGTTTATTGGGCGTTGCGATATGGCG
AATTTAGTTTCAAGAGCATGGGAATTGCCTTCGGAAAGGCTGCGATGACC
AATTTGATGTTGTGCTATCTACCTGTCAACAAGACTTCGCTTTGGACTTA
CATCTTTGGCATTTCTTTTGAGCGTGCGGTCAAATTTCATCGACATCTCT
CTTATCTAATGCTGGCATATTCAATTCTTCATCTTGGCCTCCTTATCGAA
ATAAATCCTGTCTGGGGGCTTCCTCCTAAGCTTAATGGCGTAGTCATGGC
CTATGGACTATGGGCTCTCATTGCTTTCCTCATCATGACTGTCACTGCGT
TACTTCGTCGCTGGCACTTTGAGTTATTCCGATATACGCACTACCTTTTT
ATAGCGGGTACCGTGCTCACTCTTCTACACGTGCCCAAGGCTCTACCCTA
TATGTGGATGCCCTGTCTCGTGCACGCGGCAGATTTTTTTTGGCGCTGGT
GGGGCGTGCTACGGGACATATCTGTTGCCAAGCTTTCCATCTTTCCTGAC
CACATTGCCCAGCTGGATGTCTTTTCTCAAGTACCTGGCGGGCCCAAGAG
CATTCTCAGTAGCTGCACTGGCCGCCAAGAACGCAAGTGGACCAAGCCCA
TTGAGCCTGGTAGCTATGTTTTCGTCTGTATCCCCCGAATATCTCCTTGG
CAATGGCACCCCATCAGCATTTCGACAGCCGGCATGAGCGTGCTTGGCGG
TAGTGCGATAGAGCCCTCTTACAGCTTGCACATTAAGGGCCTCGGGGATG
GCACGTGGACAGACCGCATCTATCGTCTGGCCGCGTCCAGGTCACTAACT
GTTACACCTATATCAGAGGACATGGGTTTGACAGGTTCCGTTCCCACTTT
CAGTCCAGGAGATATCGCCATAATGGGAAGGCGGGGAAGGAGGAGCCCAA
CAGTGGCCGCTGCCGGGGTGCCTGTCGCGACCCTGACGGCAGATATGGGG
TTGACCGGCTCCATGCCCACATTCAGCTCGGGAGATGTCACGGCCACGAA
GAGCCCTAGAACTACTAGTTCTCGCATGTGGGATTATGGTCAGACCAGTC
CTCGTGCACTGATCTCGCCGATGAACAAAGTTGAAGGCCTGACCATTTTA
GTGGATGGGCCTTACGGGAAGCTCTCCATAGATTTGAGCAACTACCGCAA
GCTGGTGCTGGTGGCTGGCGGGATCGGCATCACTCCCATGACAACAACCC
TTTCGTTTATCAGCCATCAGAAACGTCACCATCAATTGCCTTTGCTTGAG
AGCGTCATTCTTGTGTGGGCTGTCCGAAACAAAACGCTAGTGGATGGATT
TATCCCTTTTTTGGATCAGACCTTCTCGCAGCTCAATTCTCTGGAAACGC
CTAGCTTCTTCAAGGTGGAATTGTATGTGAGTATAGGATCGAAGTCCGCG
GCTGTTCCTGCTGCAGCAGACGCCGCTGGTAGTGCTAGAGTCATTGTCTC
AGTTGGTAATGGTGACGAAAACTCTGAGATGACGCGAGAGGCCGAGATGA
ATGGTGCATCCGCTGAAGTGGAAAAGAGAGAGGTGAAGCAAACGATACGC
ATAGGAAATAAGAGCCCTGAAGAGGGGAGTGGGACAGCGGTGAGTGCGGC
GCCGAGCCTCTTTAATATCCATTATGAACGGCCGGATATTGCGAGGGTGA
TGGAAGGGTTGTTTGGAGAGAAGGAAAAAGTAAGCGAGGAAGTGGGTGTG
CTGGTGTGTGCATCGAAAGCTCTTTTGTTTGAAGTGCAGCGACAGTGCGT
GCGCTGGGACGTTGACTTGCACGCAGAGGAATTCGCTTGGTAGGATTGAT
GAAAAAGGTTATAAAGAGAGGGTTGTGGAGAATGACTTAAATTGGGTATG
CGCGCTCGGCGTAATCTAAGGTGGTACGTAGATCGAAAACAAAATTAGGA
AAATAGAGAGAGTGGAGAGAGTGGGGAAAAAAGTGGAGAGAGAGAAGATG
ACTATGTACACGGTACATGATACGAGGTGTCAACCAGATTAATATAAGGC
ATGATAACCAGAAAGAAGAAGTACCACAGACAAGTGTATAATCGGCAATT
TGGAGAGGGTTCCACCTTAGAGAGACATGAGAAAAAGGTTGTGTGCCAAA
TAGAAGTGAAAAAATGGTGAGGTCAATGATTGACAGACATGAAGGAGAGA
AGAAGTGAGAGACAAAGGGAGTGGTCTGAGGGAAAGCACAAAGAAGGATA
CAGAGAGAGGGTCAAACTGTCTTACGCCCGTCAAGTGTGATTTCGTGGTT
GAGTCTTCCAGACGTTGTCATATGTGTGTGCATAACGACCGCCCAGAATA
TTTTGGTGTCAGTAAAGCACGAACTCAGTTTTACATATGCTTTCAAACAG
ACGAACGATCAAAAAGTCATGTCATGCGCTTGAAGATGAAAATTATTAGA
ATGGCAGGCTACCTTAACATTAGTTTTCATAGCGGGCAGAACAATGGTGT
TGAACTTCCCCCGCTAGGTCACTACAGACCATTACGCAGCAAACGCCATG
ACACTTCCTCAGTAACATGGCAGATAGATCTCAGC back to topCoding sequence (CDS) from alignment at scaffold_11:145905..148539- >mRNA_5620 ID=mRNA_5620|Name=jgi.p|Nanoce1779_2|555410|organism=Nannochloropsis oceanica|type=CDS|length=3000bp|location=Sequence derived from alignment at scaffold_11:145905..148539- (Nannochloropsis oceanica)
TGGATGGGCCTTACGGGAAGCTCTCCATAGATTTGAGCAACTACCGCAAG
CTGGTGCTGGTGGCTGGCGGGATCGGCATCACTCCCATGACAACAACCCT
TTCGTTTATCAGCCATCAGAAACGTCACCATCAATTGCCTTTGCTTGAGA
GCGTCATTCTTGTGTGGGCTGTCCGAAACAAAACGCTAGTGGATGGATTT
ATCCCTTTTTTGGATCAGACCTTCTCGCAGCTCAATTCTCTGGAAACGCC
TAGCTTCTTCAAGGTGGAATTGTATGTGAGTATAGGATCGAAGTCCGCGG
CTGTTCCTGCTGCAGCAGACGCCGCTGGTAGTGCTAGAGTCATTGTCTCA
GTTGGTAATGGTGACGAAAACTCTGAGATGACGCGAGAGGCCGAGATGAA
TGGTGCATCCGCTGAAGTGGAAAAGAGAGAGGTGAAGCAAACGATACGCA
TAGGAAATAAGAGCCCTGAAGAGGGGAGTGGGACAGCGGTGAGTGCGGCG
CCGAGCCTCTTTAATATCCATTATGAACGGCCGGATATTGCGAGGGTGAT
GGAAGGGTTGTTTGGAGAGAAGGAAAAAGTAAGCGAGGAAGTGGGTGTGC
TGGTGTGTGCATCGAAAGCTCTTTTGTTTGAAGTGCAGCGACAGTGCGTG
CGCTGGGACGTTGACTTGCACGCAGAGGAATTCGCTTGGTAGATGGGAAT
TGCCTTCGGAAAGGCTGCGATGACCAATTTGATGTTGTGCTATCTACCTG
TCAACAAGACTTCGCTTTGGACTTACATCTTTGGCATTTCTTTTGAGCGT
GCGGTCAAATTTCATCGACATCTCTCTTATCTAATGCTGGCATATTCAAT
TCTTCATCTTGGCCTCCTTATCGAAATAAATCCTGTCTGGGGGCTTCCTC
CTAAGCTTAATGGCGTAGTCATGGCCTATGGACTATGGGCTCTCATTGCT
TTCCTCATCATGACTGTCACTGCGTTACTTCGTCGCTGGCACTTTGAGTT
ATTCCGATATACGCACTACCTTTTTATAGCGGGTACCGTGCTCACTCTTC
TACACGTGCCCAAGGCTCTACCCTATATGTGGATGCCCTGTCTCGTGCAC
GCGGCAGATTTTTTTTGGCGCTGGTGGGGCGTGCTACGGGACATATCTGT
TGCCAAGCTTTCCATCTTTCCTGACCACATTGCCCAGCTGGATGTCTTTT
CTCAAGTACCTGGCGGGCCCAAGAGCATTCTCAGTAGCTGCACTGGCCGC
CAAGAACGCAAGTGGACCAAGCCCATTGAGCCTGGTAGCTATGTTTTCGT
CTGTATCCCCCGAATATCTCCTTGGCAATGGCACCCCATCAGCATTTCGA
CAGCCGGCATGAGCGTGCTTGGCGGTAGTGCGATAGAGCCCTCTTACAGC
TTGCACATTAAGGGCCTCGGGGATGGCACGTGGACAGACCGCATCTATCG
TCTGGCCGCGTCCAGGTCACTAACTGTTACACCTATATCAGAGGACATGG
TGGATGGGCCTTACGGGAAGCTCTCCATAGATTTGAGCAACTACCGCAAG
CTGGTGCTGGTGGCTGGCGGGATCGGCATCACTCCCATGACAACAACCCT
TTCGTTTATCAGCCATCAGAAACGTCACCATCAATTGCCTTTGCTTGAGA
GCGTCATTCTTGTGTGGGCTGTCCGAAACAAAACGCTAGTGGATGGATTT
ATCCCTTTTTTGGATCAGACCTTCTCGCAGCTCAATTCTCTGGAAACGCC
TAGCTTCTTCAAGGTGGAATTGTATGTGAGTATAGGATCGAAGTCCGCGG
CTGTTCCTGCTGCAGCAGACGCCGCTGGTAGTGCTAGAGTCATTGTCTCA
GTTGGTAATGGTGACGAAAACTCTGAGATGACGCGAGAGGCCGAGATGAA
TGGTGCATCCGCTGAAGTGGAAAAGAGAGAGGTGAAGCAAACGATACGCA
TAGGAAATAAGAGCCCTGAAGAGGGGAGTGGGACAGCGGTGAGTGCGGCG
CCGAGCCTCTTTAATATCCATTATGAACGGCCGGATATTGCGAGGGTGAT
GGAAGGGTTGTTTGGAGAGAAGGAAAAAGTAAGCGAGGAAGTGGGTGTGC
TGGTGTGTGCATCGAAAGCTCTTTTGTTTGAAGTGCAGCGACAGTGCGTG
CGCTGGGACGTTGACTTGCACGCAGAGGAATTCGCTTGGTAGATGGGAAT
TGCCTTCGGAAAGGCTGCGATGACCAATTTGATGTTGTGCTATCTACCTG
TCAACAAGACTTCGCTTTGGACTTACATCTTTGGCATTTCTTTTGAGCGT
GCGGTCAAATTTCATCGACATCTCTCTTATCTAATGCTGGCATATTCAAT
TCTTCATCTTGGCCTCCTTATCGAAATAAATCCTGTCTGGGGGCTTCCTC
CTAAGCTTAATGGCGTAGTCATGGCCTATGGACTATGGGCTCTCATTGCT
TTCCTCATCATGACTGTCACTGCGTTACTTCGTCGCTGGCACTTTGAGTT
ATTCCGATATACGCACTACCTTTTTATAGCGGGTACCGTGCTCACTCTTC
TACACGTGCCCAAGGCTCTACCCTATATGTGGATGCCCTGTCTCGTGCAC
GCGGCAGATTTTTTTTGGCGCTGGTGGGGCGTGCTACGGGACATATCTGT
TGCCAAGCTTTCCATCTTTCCTGACCACATTGCCCAGCTGGATGTCTTTT
CTCAAGTACCTGGCGGGCCCAAGAGCATTCTCAGTAGCTGCACTGGCCGC
CAAGAACGCAAGTGGACCAAGCCCATTGAGCCTGGTAGCTATGTTTTCGT
CTGTATCCCCCGAATATCTCCTTGGCAATGGCACCCCATCAGCATTTCGA
CAGCCGGCATGAGCGTGCTTGGCGGTAGTGCGATAGAGCCCTCTTACAGC
TTGCACATTAAGGGCCTCGGGGATGGCACGTGGACAGACCGCATCTATCG
TCTGGCCGCGTCCAGGTCACTAACTGTTACACCTATATCAGAGGACATGG back to top
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