jgi.p|Nanoce1779_2|31963, mRNA_5601 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|31963
Unique Name	mRNA_5601
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2529
Alignment location	scaffold_11:82214..84742 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	32049
Track	FilteredModels2
ProteinId	31963

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:82214..84742 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|31963	gene_5601	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|31963	mRNA_5601-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5601	CDS_5601	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:82214..84742+
coding sequence from alignment at scaffold_11:82214..84742+

mRNA sequence

>mRNA_5601 ID=mRNA_5601|Name=jgi.p|Nanoce1779_2|31963|organism=Nannochloropsis oceanica|type=mRNA|length=2529bp
GTGGAGGGGTAAAAGGGAGGGTAGGAGAGAGGGAGGGGGGCGGCGCTAGT
GCTACGACAGAGGGGCTATAGTGAGAAAGTCATCTTCTGAATTGATGGCT
GAGCCCGGGCCGGTTGTGATGCCGAAGGCATCCCTTTATCCCTCCACTCC
TCCCTCCATCATGCTCCACATACCTTCTCTCATGCTTGGTGCATGGCTGG
CCTTGAACAATTTCGTCATTCAAACACTCACCCGTTCGCTTCCTTCCCTC
CCTCCTTCCCTCCCATCCTCCTTCCCTCCCTCCAGGCCACGCCGCATTCC
CCCTCCCTGGTGTGCTGATAAATTTGATCCTCTCCCTCCCGGGCCTGTAG
ACGCTGAGGGAAACCCCTTGCAGATCGAAATTCCGCGAAGTCGGGGGGGA
GCTCGAGGGGGAGGACGGGGGGGAGGACGGGGAGGAGGAGCGGGGAGGGG
GCGGAAGAGGAGGAGCCCAAGCCCGAGTCCAAGTCGATACCCGGAAAAAT
TTTACAGCGACGACGATGACGAGGCGGGAGAGGAAGACGTTATCCTCTCC
GAGGATGAAGGGGAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGGAGCGCGGAGAAGGGTTTGTTGCAACTGCGGGTGAAGGTGCGGAGGG
AGGGAGGAGGGGGAGCAGGAGGGAAGCCCCCTCTCCACTCTCCTCGCCTC
CCTCCCGGCCCTCCCCCTCCTGTGGCCGAGCCTCCTGAGCACCAACCGTG
GGACGGACCTTCCCTCCCTCCCCCCCCTCCTTCTATCGAGCCCCTCTCTT
CCTCCTCCCTCAAGGATGGTAGCCTCGCCGCCGCCGCAGCAGCAGCTGCT
GCTGCTGCTGCCGCCGCTGCGGGGGCCGGAGACCGCAAAAGGAAGAAAAT
CCAACACAACAAGCAATCCCAACAGGCTGCGCAGACCACGGGCGGGGACG
GGACAGGCGCCTCCCCACCCTCGTCCTCGTCCTCCCCCTCCTCGCCGGTC
ACCAGCTGGCCCGCCCCTCCTCCCCCCGGCCACGCTGCTGCTGGTGCTGC
TGCTGGTGCTGCTGCTGCTGTGACAGGTGCCCCCCTTCCCCCCCCTCCAG
AGGCTGGCGGTCGGCAGTGGACGCCTCAAGAGATTCACTCCTACTACTAT
CCTCAGTGGCACAACCATCCTCCCTCCCACCCTCCCTCCTCCCAAGCTCC
TGCCGCCGGCGCCGCGCAGCAGCAGCAGCAGGGAAATGGCCCTGCTTATC
CTTTTCCTCACCCTCACTCGCTCCATCACCCCTCCCCCTACCATCCTTAC
GGCTTTCCTCCCCCTCCCCATGGCGCCTACCCCCCCTCCCTCCATCCCGC
CTTCCCCCCTCCCAATCACCAATACCCGCACGCGCCTCCCCCTCCTCCCT
TTGCCTCTGCCTACGTCCCTCCTCCTCCGCCTTCCTCCGTCCCGGCCTCG
GACAGCACCACGGGCGAACCTCCTTCCTCCCTCCCTGCCTCCTCCTCCTC
CTCCTCTGCCGGCAACACCACCATGGCCAGCAGCGCCAGCAGCACCAGCA
GCAGCAACAGCCCTTCCCCCTCCCTCACAGCCGCCACCGCCACAGGAGCT
GCCCCTCCCTCCCTCCCGTCCTCCTCCTCCTCCTCTGCGCAACAACACGA
CACCGCCACTGCCATCGGCGTCATGCCCCTCCCCCCCCCCTCCTCCTCCG
AGGGCGGGATGGAGGAAGGGCACCCGTCCTCTACCTATGCGGGTGTGCAC
TGGGACGGAGGGAAAAAGGCTTGGAGCGCTTGGCTGACTCTGCCTGGAGG
GGAGTATCAGTGTCTGGGTGAGAATTTCGGGGATGAGCAAGAGGCCGTGG
CCGCTCAAGGCGAGGCGATTGCCAATTACTACAGGACACTTGGGATGGAG
CCTCCCCCCCCGCCGCCCCCCGTGACGGCTACGACGATGGCGGTGAAGGA
GGGGGAGACCGAGGGGGAAGAGGGCGGAGGGGAAGGTAAAGGGATGGATG
TGGTGGTGGGAGAAGAACCTGTAGCAGCAGCAGCAGCAGAGGTGGCAGTG
GTGGTAGCAGCGGCAGACATGGCGGCGACGACGACAGAAGGTGAGGCCGG
GAAGGAAGTCAAGGAGGAAAAGGAGGAGGAGGAGGAGCAGCAGCAGCAGC
AGCCGGATGAGCCCCAGAAAGAAGAGGCAAGCGAGGGGACCAAAGAAGCT
GTGACTGCTCTCCTGCACGTGAGCAAGAGGGCAGCAGGTGTGGGGGAGGA
GATGGAGGGCATGGTCATGGCGGCAGAAGCAGCCGGGGCAGGCACGACTT
CCGCCTCCCCCTCGCCCGATCGCTGAGCAACAGTAGCAGTCGTAGTAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AAATACAGCAGTTACAGCAGGTGCGGCATCAGCAATTGAGTAAGTTAAAT
GGCGTGTGTGATTGTATTGAGTGTACATGTGGTTTCCTCTTCACCCTTTC
CCTCTCAGATTCCTCCTCTTTCTGGGGGC

protein sequence of jgi.p|Nanoce1779_2|31963

>mRNA_5601-protein ID=mRNA_5601-protein|Name=jgi.p|Nanoce1779_2|31963|organism=Nannochloropsis oceanica|type=polypeptide|length=744bp
MAEPGPVVMPKASLYPSTPPSIMLHIPSLMLGAWLALNNFVIQTLTRSLP
SLPPSLPSSFPPSRPRRIPPPWCADKFDPLPPGPVDAEGNPLQIEIPRSR
GGARGGGRGGGRGGGAGRGRKRRSPSPSPSRYPEKFYSDDDDEAGEEDVI
LSEDEGEGGGGGGGGGGGGGSAEKGLLQLRVKVRREGGGGAGGKPPLHSP
RLPPGPPPPVAEPPEHQPWDGPSLPPPPPSIEPLSSSSLKDGSLAAAAAA
AAAAAAAAAGAGDRKRKKIQHNKQSQQAAQTTGGDGTGASPPSSSSSPSS
PVTSWPAPPPPGHAAAGAAAGAAAAVTGAPLPPPPEAGGRQWTPQEIHSY
YYPQWHNHPPSHPPSSQAPAAGAAQQQQQGNGPAYPFPHPHSLHHPSPYH
PYGFPPPPHGAYPPSLHPAFPPPNHQYPHAPPPPPFASAYVPPPPPSSVP
ASDSTTGEPPSSLPASSSSSSAGNTTMASSASSTSSSNSPSPSLTAATAT
GAAPPSLPSSSSSSAQQHDTATAIGVMPLPPPSSSEGGMEEGHPSSTYAG
VHWDGGKKAWSAWLTLPGGEYQCLGENFGDEQEAVAAQGEAIANYYRTLG
MEPPPPPPPVTATTMAVKEGETEGEEGGGEGKGMDVVVGEEPVAAAAAEV
AVVVAAADMAATTTEGEAGKEVKEEKEEEEEQQQQQPDEPQKEEASEGTK
EAVTALLHVSKRAAGVGEEMEGMVMAAEAAGAGTTSASPSPDR*

mRNA from alignment at scaffold_11:82214..84742+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5601 ID=mRNA_5601|Name=jgi.p|Nanoce1779_2|31963|organism=Nannochloropsis oceanica|type=mRNA|length=2529bp|location=Sequence derived from alignment at scaffold_11:82214..84742+ (Nannochloropsis oceanica)
GTGGAGGGGTAAAAGGGAGGGTAGGAGAGAGGGAGGGGGGCGGCGCTAGT
GCTACGACAGAGGGGCTATAGTGAGAAAGTCATCTTCTGAATTGATGGCT
GAGCCCGGGCCGGTTGTGATGCCGAAGGCATCCCTTTATCCCTCCACTCC
TCCCTCCATCATGCTCCACATACCTTCTCTCATGCTTGGTGCATGGCTGG
CCTTGAACAATTTCGTCATTCAAACACTCACCCGTTCGCTTCCTTCCCTC
CCTCCTTCCCTCCCATCCTCCTTCCCTCCCTCCAGGCCACGCCGCATTCC
CCCTCCCTGGTGTGCTGATAAATTTGATCCTCTCCCTCCCGGGCCTGTAG
ACGCTGAGGGAAACCCCTTGCAGATCGAAATTCCGCGAAGTCGGGGGGGA
GCTCGAGGGGGAGGACGGGGGGGAGGACGGGGAGGAGGAGCGGGGAGGGG
GCGGAAGAGGAGGAGCCCAAGCCCGAGTCCAAGTCGATACCCGGAAAAAT
TTTACAGCGACGACGATGACGAGGCGGGAGAGGAAGACGTTATCCTCTCC
GAGGATGAAGGGGAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGGAGCGCGGAGAAGGGTTTGTTGCAACTGCGGGTGAAGGTGCGGAGGG
AGGGAGGAGGGGGAGCAGGAGGGAAGCCCCCTCTCCACTCTCCTCGCCTC
CCTCCCGGCCCTCCCCCTCCTGTGGCCGAGCCTCCTGAGCACCAACCGTG
GGACGGACCTTCCCTCCCTCCCCCCCCTCCTTCTATCGAGCCCCTCTCTT
CCTCCTCCCTCAAGGATGGTAGCCTCGCCGCCGCCGCAGCAGCAGCTGCT
GCTGCTGCTGCCGCCGCTGCGGGGGCCGGAGACCGCAAAAGGAAGAAAAT
CCAACACAACAAGCAATCCCAACAGGCTGCGCAGACCACGGGCGGGGACG
GGACAGGCGCCTCCCCACCCTCGTCCTCGTCCTCCCCCTCCTCGCCGGTC
ACCAGCTGGCCCGCCCCTCCTCCCCCCGGCCACGCTGCTGCTGGTGCTGC
TGCTGGTGCTGCTGCTGCTGTGACAGGTGCCCCCCTTCCCCCCCCTCCAG
AGGCTGGCGGTCGGCAGTGGACGCCTCAAGAGATTCACTCCTACTACTAT
CCTCAGTGGCACAACCATCCTCCCTCCCACCCTCCCTCCTCCCAAGCTCC
TGCCGCCGGCGCCGCGCAGCAGCAGCAGCAGGGAAATGGCCCTGCTTATC
CTTTTCCTCACCCTCACTCGCTCCATCACCCCTCCCCCTACCATCCTTAC
GGCTTTCCTCCCCCTCCCCATGGCGCCTACCCCCCCTCCCTCCATCCCGC
CTTCCCCCCTCCCAATCACCAATACCCGCACGCGCCTCCCCCTCCTCCCT
TTGCCTCTGCCTACGTCCCTCCTCCTCCGCCTTCCTCCGTCCCGGCCTCG
GACAGCACCACGGGCGAACCTCCTTCCTCCCTCCCTGCCTCCTCCTCCTC
CTCCTCTGCCGGCAACACCACCATGGCCAGCAGCGCCAGCAGCACCAGCA
GCAGCAACAGCCCTTCCCCCTCCCTCACAGCCGCCACCGCCACAGGAGCT
GCCCCTCCCTCCCTCCCGTCCTCCTCCTCCTCCTCTGCGCAACAACACGA
CACCGCCACTGCCATCGGCGTCATGCCCCTCCCCCCCCCCTCCTCCTCCG
AGGGCGGGATGGAGGAAGGGCACCCGTCCTCTACCTATGCGGGTGTGCAC
TGGGACGGAGGGAAAAAGGCTTGGAGCGCTTGGCTGACTCTGCCTGGAGG
GGAGTATCAGTGTCTGGGTGAGAATTTCGGGGATGAGCAAGAGGCCGTGG
CCGCTCAAGGCGAGGCGATTGCCAATTACTACAGGACACTTGGGATGGAG
CCTCCCCCCCCGCCGCCCCCCGTGACGGCTACGACGATGGCGGTGAAGGA
GGGGGAGACCGAGGGGGAAGAGGGCGGAGGGGAAGGTAAAGGGATGGATG
TGGTGGTGGGAGAAGAACCTGTAGCAGCAGCAGCAGCAGAGGTGGCAGTG
GTGGTAGCAGCGGCAGACATGGCGGCGACGACGACAGAAGGTGAGGCCGG
GAAGGAAGTCAAGGAGGAAAAGGAGGAGGAGGAGGAGCAGCAGCAGCAGC
AGCCGGATGAGCCCCAGAAAGAAGAGGCAAGCGAGGGGACCAAAGAAGCT
GTGACTGCTCTCCTGCACGTGAGCAAGAGGGCAGCAGGTGTGGGGGAGGA
GATGGAGGGCATGGTCATGGCGGCAGAAGCAGCCGGGGCAGGCACGACTT
CCGCCTCCCCCTCGCCCGATCGCTGAGCAACAGTAGCAGTCGTAGTAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AAATACAGCAGTTACAGCAGGTGCGGCATCAGCAATTGAGTAAGTTAAAT
GGCGTGTGTGATTGTATTGAGTGTACATGTGGTTTCCTCTTCACCCTTTC
CCTCTCAGATTCCTCCTCTTTCTGGGGGC

Coding sequence (CDS) from alignment at scaffold_11:82214..84742+

>mRNA_5601 ID=mRNA_5601|Name=jgi.p|Nanoce1779_2|31963|organism=Nannochloropsis oceanica|type=CDS|length=2232bp|location=Sequence derived from alignment at scaffold_11:82214..84742+ (Nannochloropsis oceanica)
ATGGCTGAGCCCGGGCCGGTTGTGATGCCGAAGGCATCCCTTTATCCCTC
CACTCCTCCCTCCATCATGCTCCACATACCTTCTCTCATGCTTGGTGCAT
GGCTGGCCTTGAACAATTTCGTCATTCAAACACTCACCCGTTCGCTTCCT
TCCCTCCCTCCTTCCCTCCCATCCTCCTTCCCTCCCTCCAGGCCACGCCG
CATTCCCCCTCCCTGGTGTGCTGATAAATTTGATCCTCTCCCTCCCGGGC
CTGTAGACGCTGAGGGAAACCCCTTGCAGATCGAAATTCCGCGAAGTCGG
GGGGGAGCTCGAGGGGGAGGACGGGGGGGAGGACGGGGAGGAGGAGCGGG
GAGGGGGCGGAAGAGGAGGAGCCCAAGCCCGAGTCCAAGTCGATACCCGG
AAAAATTTTACAGCGACGACGATGACGAGGCGGGAGAGGAAGACGTTATC
CTCTCCGAGGATGAAGGGGAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGGAGCGCGGAGAAGGGTTTGTTGCAACTGCGGGTGAAGGTGC
GGAGGGAGGGAGGAGGGGGAGCAGGAGGGAAGCCCCCTCTCCACTCTCCT
CGCCTCCCTCCCGGCCCTCCCCCTCCTGTGGCCGAGCCTCCTGAGCACCA
ACCGTGGGACGGACCTTCCCTCCCTCCCCCCCCTCCTTCTATCGAGCCCC
TCTCTTCCTCCTCCCTCAAGGATGGTAGCCTCGCCGCCGCCGCAGCAGCA
GCTGCTGCTGCTGCTGCCGCCGCTGCGGGGGCCGGAGACCGCAAAAGGAA
GAAAATCCAACACAACAAGCAATCCCAACAGGCTGCGCAGACCACGGGCG
GGGACGGGACAGGCGCCTCCCCACCCTCGTCCTCGTCCTCCCCCTCCTCG
CCGGTCACCAGCTGGCCCGCCCCTCCTCCCCCCGGCCACGCTGCTGCTGG
TGCTGCTGCTGGTGCTGCTGCTGCTGTGACAGGTGCCCCCCTTCCCCCCC
CTCCAGAGGCTGGCGGTCGGCAGTGGACGCCTCAAGAGATTCACTCCTAC
TACTATCCTCAGTGGCACAACCATCCTCCCTCCCACCCTCCCTCCTCCCA
AGCTCCTGCCGCCGGCGCCGCGCAGCAGCAGCAGCAGGGAAATGGCCCTG
CTTATCCTTTTCCTCACCCTCACTCGCTCCATCACCCCTCCCCCTACCAT
CCTTACGGCTTTCCTCCCCCTCCCCATGGCGCCTACCCCCCCTCCCTCCA
TCCCGCCTTCCCCCCTCCCAATCACCAATACCCGCACGCGCCTCCCCCTC
CTCCCTTTGCCTCTGCCTACGTCCCTCCTCCTCCGCCTTCCTCCGTCCCG
GCCTCGGACAGCACCACGGGCGAACCTCCTTCCTCCCTCCCTGCCTCCTC
CTCCTCCTCCTCTGCCGGCAACACCACCATGGCCAGCAGCGCCAGCAGCA
CCAGCAGCAGCAACAGCCCTTCCCCCTCCCTCACAGCCGCCACCGCCACA
GGAGCTGCCCCTCCCTCCCTCCCGTCCTCCTCCTCCTCCTCTGCGCAACA
ACACGACACCGCCACTGCCATCGGCGTCATGCCCCTCCCCCCCCCCTCCT
CCTCCGAGGGCGGGATGGAGGAAGGGCACCCGTCCTCTACCTATGCGGGT
GTGCACTGGGACGGAGGGAAAAAGGCTTGGAGCGCTTGGCTGACTCTGCC
TGGAGGGGAGTATCAGTGTCTGGGTGAGAATTTCGGGGATGAGCAAGAGG
CCGTGGCCGCTCAAGGCGAGGCGATTGCCAATTACTACAGGACACTTGGG
ATGGAGCCTCCCCCCCCGCCGCCCCCCGTGACGGCTACGACGATGGCGGT
GAAGGAGGGGGAGACCGAGGGGGAAGAGGGCGGAGGGGAAGGTAAAGGGA
TGGATGTGGTGGTGGGAGAAGAACCTGTAGCAGCAGCAGCAGCAGAGGTG
GCAGTGGTGGTAGCAGCGGCAGACATGGCGGCGACGACGACAGAAGGTGA
GGCCGGGAAGGAAGTCAAGGAGGAAAAGGAGGAGGAGGAGGAGCAGCAGC
AGCAGCAGCCGGATGAGCCCCAGAAAGAAGAGGCAAGCGAGGGGACCAAA
GAAGCTGTGACTGCTCTCCTGCACGTGAGCAAGAGGGCAGCAGGTGTGGG
GGAGGAGATGGAGGGCATGGTCATGGCGGCAGAAGCAGCCGGGGCAGGCA
CGACTTCCGCCTCCCCCTCGCCCGATCGCTGA

Synonyms

Publications