jgi.p|Nanoce1779_2|592834, mRNA_5525 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592834
Unique Name	mRNA_5525
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2801
Alignment location	scaffold_13:630040..632840 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	592920
Track	FilteredModels2
ProteinId	592834

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:630040..632840 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592834	gene_5525	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592834	mRNA_5525-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5525	CDS_5525	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:630040..632840+
coding sequence from alignment at scaffold_13:630040..632840+

mRNA sequence

>mRNA_5525 ID=mRNA_5525|Name=jgi.p|Nanoce1779_2|592834|organism=Nannochloropsis oceanica|type=mRNA|length=2801bp
AAGAAGTAAGTAAAGTGTGTATATTTGTCATGTGCGTGCATGCTTGTTCT
GTTTTCCTTTTTTCGTTTTGTCCAGTGTCAAGAGATGGAGGAGAGGCAGG
AGGGGTTGACGCATCGTGTATCAGGCAGCGCGGGCTCCAAAATATTCCGA
TTGGGAGCCATGTCCTGAAAAGCTCGCCCACGCCTTTTCTGTGGTTGTCC
TCCTTCTTCCATTCCGTGTGTTGCCGCCTTATGTGTGCACGCCGTGTATA
ACATGCGCTTGTCTCTACTGGTTCCATGCACAGGAGAAGGGGAATCGTGC
CTGCTGAAGTCTCTCCTAGACCCCGCGACCATCCGTTGCTTTCCTCTTAA
CCCTATCATCATCATTGCCTCCCCACACCTACGCCCAACACACACACACT
CTCACATTCTGTCACGCACGCTCACACAGCGCGTCGTCCAACTCAAACCC
GCAGTACCATGCCGGGCGAGGACTACGACAACGACTACGGCGAGCAGCTT
GACTCACTCGCCACCATCGATGAGGAGCTGAAGGGCTACCTCTCGGAAGG
GCCAACCGATTGGGTGGAGCCCGTCTACGAGCCTGACTACTCCACCGCCA
TCGTCGTCGACAACCTGCCCAAGGTCCCCAAAGACAAGTACGAGAAGCTC
CTGGGCTATGTTCGAAAGATCTACCAGCAAATCGGACCCCTGGCCGAGGA
CGGTTTGCAGATGCCCGTGGACGATGCGACTGGGATGACCCAAGGCTATG
CCTTCATCAACTTCCTCGCGCGCGACTCGGCCGAGAAAGCCATCGCCGCC
ACCAACAACTGGAACTTCGACAAGGCCCACGCTCTGAAAGTCAACAGCTA
CGTTGACTTGGTCCGGACGATGGCGCATCCCGAAACCTATACCCCTCAGC
CAGCGCGTCCTTTAACGACGGTGCCGGGGCTGTATGCGTGGTTGAAGGAT
GCTCAGTTCCGCGACCAGTTCGTGGTGCGCCACGGGAGAGACACTGAAGT
GTTCTGGGCGGAGGCGGGAGGAACCCCCGAGTTGGTGTATGGAGGGGAGA
GGGAGAAGGCGGCGGGACAAGGGAGGTTTTGGTGTGACCAGTACGTGGCA
TGGAGTAAAACGGGGGCTTACCTTCTGACCTACCACAGGCAGGGCGTTGC
CCTGTGGGGAGGCCCAAATTTCGAGAAAGTGGCACGATTGGCGCATCATG
GTGTGGCGCTTGCGCACTTTTCGAATACGGATCGGTACCTGGTCACGTAT
TCGTATCCGCAAGTACCGGGGGATGGGCCCGGTCATGTGGTTGTGTGGGA
CGTGGAGAGGTCCATCTCGGTGCAGCAGCAGGTTGCATTAAGATCCTGGC
CTGTGGAGCCTTATGGAAAAGGGAATTGTTTCAAGTGGTCGCATGATGAT
AAATATATTGCGGTGGGAAAGAGTGCGTATCTGAGGAACCCTCAGGCAGC
CCAAGCAGCGATGGACGAGAGTGGAGGAGGAGGGGGCCTGCCAGGGCATC
AGAAGCAGGTGAGCATGGGGGGCGTTGGAGGAGATGGAGTGATGGATGAT
GTGGAGGGTCAGATCAGCGTGTTTGAGGTTCCCAGTATGGAGTTGTTGGA
TCGGAAGTCGATACGAGCCGAGGGACTGCGGGGTTGGGACTGGTGTCCCA
AGTCGAACCTGCTCGCTTACTGGGCACCGGAGAAGCAGCAACAGCCGGCG
AGGGTGGTGTTGGTGGAATTGCCTAGCAAGAAAGAGGTGCGACGTAAGCC
TTTGTTTCATGTGGAAGACTGCGCGCTGACGTGGCAGAATGAGGGGGAGT
ACCTGTGCGCGAAAGTGACGCACAAGAAGCGCCAGTCCAAGAAAAAGGTT
TCCCTGGAGCTTTTCCGCATCAAGGAAGCAGGGATCGCCCTCGAAATGGT
CGAGTTGGATCCCACTCCTGTCCAGGATTTCGCGTGGGAGCCTGCGGGCC
ACCGATTCGCGCTCCTTCATGGGGAGGATGCGCATCCTTTCACGGTGTCA
TTTTATTCCATGTTGCAACCAGTGACGGGACAGAAGGAGGTTACCCTCCT
CCACCGCCTGGAGAGCCCTAAGGCCCGCACGGTGAACAAGCTATTATGGT
CTCCGAATGGCTCCATCATTGTGTTGGCGAACCTAACGGAGGGGAGTACG
TTGGAATTTTACGACGTGGACACCCAAAGCAGCCTTGCGAAGCGGGATGA
CTTGTCTCGCATCGATTACTTGAAGTGGGATCCGTCAGGGCGATACCTCA
CTGATGCGATTCAACAGCCGATGGGTAACAGCTACTACAAATATAGCTAC
GACAACGGGTTCCGGGTATGGACGTTTCAGGGAACGCTGATAGCGCATAT
TGAGAAGCCGCAGTTTTATATGTTTCAATGGCGACCTCGCCCGCCTTCGC
TGTTGACGGCGGAACAGCAGAGAAAGGTGAAGAAAGACTTGAGGAAGTAC
GAGAGGAGGTTTGACAAGGAGGACCGAGAGAAGGAAATGAATAAGAAGAG
GGAGGAGTGGAGGAGGAAGGGGGCCAGACGGGCGGAGTTCAGGTCGTTCT
ATGCGAGGAGGAGGGAGGAGATGATGGCTAGGAAGGAGGAGCTGATTGCG
TTGCAGAAGGGGTATGATGACGAGGACCCGGATAATTATGAGGTGAGAGT
GGTGACCAGACGGATGGTGCCATTGGGGGAGCCGGAGATGGCGGGGCAGT
GAAGTTTGAAGGAGGGAGTGTAGGAAAGTAGGAAGGGAAGGGTCGGACAT
AGACAAGAAAAGATAGACTCATGATTTATGAGAAGAGGGTGTGAAGGAGG
T

protein sequence of jgi.p|Nanoce1779_2|592834

>mRNA_5525-protein ID=mRNA_5525-protein|Name=jgi.p|Nanoce1779_2|592834|organism=Nannochloropsis oceanica|type=polypeptide|length=748bp
MPGEDYDNDYGEQLDSLATIDEELKGYLSEGPTDWVEPVYEPDYSTAIVV
DNLPKVPKDKYEKLLGYVRKIYQQIGPLAEDGLQMPVDDATGMTQGYAFI
NFLARDSAEKAIAATNNWNFDKAHALKVNSYVDLVRTMAHPETYTPQPAR
PLTTVPGLYAWLKDAQFRDQFVVRHGRDTEVFWAEAGGTPELVYGGEREK
AAGQGRFWCDQYVAWSKTGAYLLTYHRQGVALWGGPNFEKVARLAHHGVA
LAHFSNTDRYLVTYSYPQVPGDGPGHVVVWDVERSISVQQQVALRSWPVE
PYGKGNCFKWSHDDKYIAVGKSAYLRNPQAAQAAMDESGGGGGLPGHQKQ
VSMGGVGGDGVMDDVEGQISVFEVPSMELLDRKSIRAEGLRGWDWCPKSN
LLAYWAPEKQQQPARVVLVELPSKKEVRRKPLFHVEDCALTWQNEGEYLC
AKVTHKKRQSKKKVSLELFRIKEAGIALEMVELDPTPVQDFAWEPAGHRF
ALLHGEDAHPFTVSFYSMLQPVTGQKEVTLLHRLESPKARTVNKLLWSPN
GSIIVLANLTEGSTLEFYDVDTQSSLAKRDDLSRIDYLKWDPSGRYLTDA
IQQPMGNSYYKYSYDNGFRVWTFQGTLIAHIEKPQFYMFQWRPRPPSLLT
AEQQRKVKKDLRKYERRFDKEDREKEMNKKREEWRRKGARRAEFRSFYAR
RREEMMARKEELIALQKGYDDEDPDNYEVRVVTRRMVPLGEPEMAGQ*

mRNA from alignment at scaffold_13:630040..632840+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5525 ID=mRNA_5525|Name=jgi.p|Nanoce1779_2|592834|organism=Nannochloropsis oceanica|type=mRNA|length=2801bp|location=Sequence derived from alignment at scaffold_13:630040..632840+ (Nannochloropsis oceanica)
AAGAAGTAAGTAAAGTGTGTATATTTGTCATGTGCGTGCATGCTTGTTCT
GTTTTCCTTTTTTCGTTTTGTCCAGTGTCAAGAGATGGAGGAGAGGCAGG
AGGGGTTGACGCATCGTGTATCAGGCAGCGCGGGCTCCAAAATATTCCGA
TTGGGAGCCATGTCCTGAAAAGCTCGCCCACGCCTTTTCTGTGGTTGTCC
TCCTTCTTCCATTCCGTGTGTTGCCGCCTTATGTGTGCACGCCGTGTATA
ACATGCGCTTGTCTCTACTGGTTCCATGCACAGGAGAAGGGGAATCGTGC
CTGCTGAAGTCTCTCCTAGACCCCGCGACCATCCGTTGCTTTCCTCTTAA
CCCTATCATCATCATTGCCTCCCCACACCTACGCCCAACACACACACACT
CTCACATTCTGTCACGCACGCTCACACAGCGCGTCGTCCAACTCAAACCC
GCAGTACCATGCCGGGCGAGGACTACGACAACGACTACGGCGAGCAGCTT
GACTCACTCGCCACCATCGATGAGGAGCTGAAGGGCTACCTCTCGGAAGG
GCCAACCGATTGGGTGGAGCCCGTCTACGAGCCTGACTACTCCACCGCCA
TCGTCGTCGACAACCTGCCCAAGGTCCCCAAAGACAAGTACGAGAAGCTC
CTGGGCTATGTTCGAAAGATCTACCAGCAAATCGGACCCCTGGCCGAGGA
CGGTTTGCAGATGCCCGTGGACGATGCGACTGGGATGACCCAAGGCTATG
CCTTCATCAACTTCCTCGCGCGCGACTCGGCCGAGAAAGCCATCGCCGCC
ACCAACAACTGGAACTTCGACAAGGCCCACGCTCTGAAAGTCAACAGCTA
CGTTGACTTGGTCCGGACGATGGCGCATCCCGAAACCTATACCCCTCAGC
CAGCGCGTCCTTTAACGACGGTGCCGGGGCTGTATGCGTGGTTGAAGGAT
GCTCAGTTCCGCGACCAGTTCGTGGTGCGCCACGGGAGAGACACTGAAGT
GTTCTGGGCGGAGGCGGGAGGAACCCCCGAGTTGGTGTATGGAGGGGAGA
GGGAGAAGGCGGCGGGACAAGGGAGGTTTTGGTGTGACCAGTACGTGGCA
TGGAGTAAAACGGGGGCTTACCTTCTGACCTACCACAGGCAGGGCGTTGC
CCTGTGGGGAGGCCCAAATTTCGAGAAAGTGGCACGATTGGCGCATCATG
GTGTGGCGCTTGCGCACTTTTCGAATACGGATCGGTACCTGGTCACGTAT
TCGTATCCGCAAGTACCGGGGGATGGGCCCGGTCATGTGGTTGTGTGGGA
CGTGGAGAGGTCCATCTCGGTGCAGCAGCAGGTTGCATTAAGATCCTGGC
CTGTGGAGCCTTATGGAAAAGGGAATTGTTTCAAGTGGTCGCATGATGAT
AAATATATTGCGGTGGGAAAGAGTGCGTATCTGAGGAACCCTCAGGCAGC
CCAAGCAGCGATGGACGAGAGTGGAGGAGGAGGGGGCCTGCCAGGGCATC
AGAAGCAGGTGAGCATGGGGGGCGTTGGAGGAGATGGAGTGATGGATGAT
GTGGAGGGTCAGATCAGCGTGTTTGAGGTTCCCAGTATGGAGTTGTTGGA
TCGGAAGTCGATACGAGCCGAGGGACTGCGGGGTTGGGACTGGTGTCCCA
AGTCGAACCTGCTCGCTTACTGGGCACCGGAGAAGCAGCAACAGCCGGCG
AGGGTGGTGTTGGTGGAATTGCCTAGCAAGAAAGAGGTGCGACGTAAGCC
TTTGTTTCATGTGGAAGACTGCGCGCTGACGTGGCAGAATGAGGGGGAGT
ACCTGTGCGCGAAAGTGACGCACAAGAAGCGCCAGTCCAAGAAAAAGGTT
TCCCTGGAGCTTTTCCGCATCAAGGAAGCAGGGATCGCCCTCGAAATGGT
CGAGTTGGATCCCACTCCTGTCCAGGATTTCGCGTGGGAGCCTGCGGGCC
ACCGATTCGCGCTCCTTCATGGGGAGGATGCGCATCCTTTCACGGTGTCA
TTTTATTCCATGTTGCAACCAGTGACGGGACAGAAGGAGGTTACCCTCCT
CCACCGCCTGGAGAGCCCTAAGGCCCGCACGGTGAACAAGCTATTATGGT
CTCCGAATGGCTCCATCATTGTGTTGGCGAACCTAACGGAGGGGAGTACG
TTGGAATTTTACGACGTGGACACCCAAAGCAGCCTTGCGAAGCGGGATGA
CTTGTCTCGCATCGATTACTTGAAGTGGGATCCGTCAGGGCGATACCTCA
CTGATGCGATTCAACAGCCGATGGGTAACAGCTACTACAAATATAGCTAC
GACAACGGGTTCCGGGTATGGACGTTTCAGGGAACGCTGATAGCGCATAT
TGAGAAGCCGCAGTTTTATATGTTTCAATGGCGACCTCGCCCGCCTTCGC
TGTTGACGGCGGAACAGCAGAGAAAGGTGAAGAAAGACTTGAGGAAGTAC
GAGAGGAGGTTTGACAAGGAGGACCGAGAGAAGGAAATGAATAAGAAGAG
GGAGGAGTGGAGGAGGAAGGGGGCCAGACGGGCGGAGTTCAGGTCGTTCT
ATGCGAGGAGGAGGGAGGAGATGATGGCTAGGAAGGAGGAGCTGATTGCG
TTGCAGAAGGGGTATGATGACGAGGACCCGGATAATTATGAGGTGAGAGT
GGTGACCAGACGGATGGTGCCATTGGGGGAGCCGGAGATGGCGGGGCAGT
GAAGTTTGAAGGAGGGAGTGTAGGAAAGTAGGAAGGGAAGGGTCGGACAT
AGACAAGAAAAGATAGACTCATGATTTATGAGAAGAGGGTGTGAAGGAGG
T

Coding sequence (CDS) from alignment at scaffold_13:630040..632840+

>mRNA_5525 ID=mRNA_5525|Name=jgi.p|Nanoce1779_2|592834|organism=Nannochloropsis oceanica|type=CDS|length=2244bp|location=Sequence derived from alignment at scaffold_13:630040..632840+ (Nannochloropsis oceanica)
ATGCCGGGCGAGGACTACGACAACGACTACGGCGAGCAGCTTGACTCACT
CGCCACCATCGATGAGGAGCTGAAGGGCTACCTCTCGGAAGGGCCAACCG
ATTGGGTGGAGCCCGTCTACGAGCCTGACTACTCCACCGCCATCGTCGTC
GACAACCTGCCCAAGGTCCCCAAAGACAAGTACGAGAAGCTCCTGGGCTA
TGTTCGAAAGATCTACCAGCAAATCGGACCCCTGGCCGAGGACGGTTTGC
AGATGCCCGTGGACGATGCGACTGGGATGACCCAAGGCTATGCCTTCATC
AACTTCCTCGCGCGCGACTCGGCCGAGAAAGCCATCGCCGCCACCAACAA
CTGGAACTTCGACAAGGCCCACGCTCTGAAAGTCAACAGCTACGTTGACT
TGGTCCGGACGATGGCGCATCCCGAAACCTATACCCCTCAGCCAGCGCGT
CCTTTAACGACGGTGCCGGGGCTGTATGCGTGGTTGAAGGATGCTCAGTT
CCGCGACCAGTTCGTGGTGCGCCACGGGAGAGACACTGAAGTGTTCTGGG
CGGAGGCGGGAGGAACCCCCGAGTTGGTGTATGGAGGGGAGAGGGAGAAG
GCGGCGGGACAAGGGAGGTTTTGGTGTGACCAGTACGTGGCATGGAGTAA
AACGGGGGCTTACCTTCTGACCTACCACAGGCAGGGCGTTGCCCTGTGGG
GAGGCCCAAATTTCGAGAAAGTGGCACGATTGGCGCATCATGGTGTGGCG
CTTGCGCACTTTTCGAATACGGATCGGTACCTGGTCACGTATTCGTATCC
GCAAGTACCGGGGGATGGGCCCGGTCATGTGGTTGTGTGGGACGTGGAGA
GGTCCATCTCGGTGCAGCAGCAGGTTGCATTAAGATCCTGGCCTGTGGAG
CCTTATGGAAAAGGGAATTGTTTCAAGTGGTCGCATGATGATAAATATAT
TGCGGTGGGAAAGAGTGCGTATCTGAGGAACCCTCAGGCAGCCCAAGCAG
CGATGGACGAGAGTGGAGGAGGAGGGGGCCTGCCAGGGCATCAGAAGCAG
GTGAGCATGGGGGGCGTTGGAGGAGATGGAGTGATGGATGATGTGGAGGG
TCAGATCAGCGTGTTTGAGGTTCCCAGTATGGAGTTGTTGGATCGGAAGT
CGATACGAGCCGAGGGACTGCGGGGTTGGGACTGGTGTCCCAAGTCGAAC
CTGCTCGCTTACTGGGCACCGGAGAAGCAGCAACAGCCGGCGAGGGTGGT
GTTGGTGGAATTGCCTAGCAAGAAAGAGGTGCGACGTAAGCCTTTGTTTC
ATGTGGAAGACTGCGCGCTGACGTGGCAGAATGAGGGGGAGTACCTGTGC
GCGAAAGTGACGCACAAGAAGCGCCAGTCCAAGAAAAAGGTTTCCCTGGA
GCTTTTCCGCATCAAGGAAGCAGGGATCGCCCTCGAAATGGTCGAGTTGG
ATCCCACTCCTGTCCAGGATTTCGCGTGGGAGCCTGCGGGCCACCGATTC
GCGCTCCTTCATGGGGAGGATGCGCATCCTTTCACGGTGTCATTTTATTC
CATGTTGCAACCAGTGACGGGACAGAAGGAGGTTACCCTCCTCCACCGCC
TGGAGAGCCCTAAGGCCCGCACGGTGAACAAGCTATTATGGTCTCCGAAT
GGCTCCATCATTGTGTTGGCGAACCTAACGGAGGGGAGTACGTTGGAATT
TTACGACGTGGACACCCAAAGCAGCCTTGCGAAGCGGGATGACTTGTCTC
GCATCGATTACTTGAAGTGGGATCCGTCAGGGCGATACCTCACTGATGCG
ATTCAACAGCCGATGGGTAACAGCTACTACAAATATAGCTACGACAACGG
GTTCCGGGTATGGACGTTTCAGGGAACGCTGATAGCGCATATTGAGAAGC
CGCAGTTTTATATGTTTCAATGGCGACCTCGCCCGCCTTCGCTGTTGACG
GCGGAACAGCAGAGAAAGGTGAAGAAAGACTTGAGGAAGTACGAGAGGAG
GTTTGACAAGGAGGACCGAGAGAAGGAAATGAATAAGAAGAGGGAGGAGT
GGAGGAGGAAGGGGGCCAGACGGGCGGAGTTCAGGTCGTTCTATGCGAGG
AGGAGGGAGGAGATGATGGCTAGGAAGGAGGAGCTGATTGCGTTGCAGAA
GGGGTATGATGACGAGGACCCGGATAATTATGAGGTGAGAGTGGTGACCA
GACGGATGGTGCCATTGGGGGAGCCGGAGATGGCGGGGCAGTGA

Synonyms

Publications