jgi.p|Nanoce1779_2|592834, gene_5525 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592834
Unique Namegene_5525
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_13:630040..632840 +

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Properties
Property NameValue
TranscriptId592920
ProteinId592834
Product nameeukaryotic initiation factor 3b
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:630040..632840 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003743translation initiation factor activity
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL014ncniL014Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03500NO12G03500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592834mRNA_5525-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592834mRNA_5525Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|592834

>mRNA_5525-protein ID=mRNA_5525-protein|Name=jgi.p|Nanoce1779_2|592834|organism=Nannochloropsis oceanica|type=polypeptide|length=748bp
MPGEDYDNDYGEQLDSLATIDEELKGYLSEGPTDWVEPVYEPDYSTAIVV
DNLPKVPKDKYEKLLGYVRKIYQQIGPLAEDGLQMPVDDATGMTQGYAFI
NFLARDSAEKAIAATNNWNFDKAHALKVNSYVDLVRTMAHPETYTPQPAR
PLTTVPGLYAWLKDAQFRDQFVVRHGRDTEVFWAEAGGTPELVYGGEREK
AAGQGRFWCDQYVAWSKTGAYLLTYHRQGVALWGGPNFEKVARLAHHGVA
LAHFSNTDRYLVTYSYPQVPGDGPGHVVVWDVERSISVQQQVALRSWPVE
PYGKGNCFKWSHDDKYIAVGKSAYLRNPQAAQAAMDESGGGGGLPGHQKQ
VSMGGVGGDGVMDDVEGQISVFEVPSMELLDRKSIRAEGLRGWDWCPKSN
LLAYWAPEKQQQPARVVLVELPSKKEVRRKPLFHVEDCALTWQNEGEYLC
AKVTHKKRQSKKKVSLELFRIKEAGIALEMVELDPTPVQDFAWEPAGHRF
ALLHGEDAHPFTVSFYSMLQPVTGQKEVTLLHRLESPKARTVNKLLWSPN
GSIIVLANLTEGSTLEFYDVDTQSSLAKRDDLSRIDYLKWDPSGRYLTDA
IQQPMGNSYYKYSYDNGFRVWTFQGTLIAHIEKPQFYMFQWRPRPPSLLT
AEQQRKVKKDLRKYERRFDKEDREKEMNKKREEWRRKGARRAEFRSFYAR
RREEMMARKEELIALQKGYDDEDPDNYEVRVVTRRMVPLGEPEMAGQ*
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Synonyms
Publications