jgi.p|Nanoce1779_2|592821, mRNA_5522 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592821
Unique NamemRNA_5522
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1698
Alignment locationscaffold_13:624189..625886 -

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Properties
Property NameValue
TranscriptId592907
TrackFilteredModels2
ProteinId592821
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:624189..625886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592821gene_5522Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592821mRNA_5522-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5522CDS_5522Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5522 ID=mRNA_5522|Name=jgi.p|Nanoce1779_2|592821|organism=Nannochloropsis oceanica|type=mRNA|length=1698bp
CAACAACAACAGCAGCAGCAACAAGCACCACCACAGCAGCCGGTGTCACA
GTACTTTCCCCACCAGCATCAACAGCTGAATCTGCTTGTACAGCAGCAGC
ACCAGCAGCACCAGCAGCACCAGCGGCAGCAGCACCAGCATGGAATGGAA
GAAGAAAGTATGCCCATGGCAACAATGCAAGCACAAGAGGACACCGACGA
CGACATCTCCAAATATTTTTACAAGTCCTCCCCGGAGTGTCTCGAGGACA
GCACCAACAGCATCAGCAGTCGCGGTAACACCGCCTTCTCCTCTTCCGTC
GCTGGTGGTAGTAAGACGACCGACGACGTTGTCACTTCTGTCTACCGTCC
CTTGCTCATGACGGGCACCACCCCCAACAGCACCAGCTCCATCTTCTGTC
GCAATACAGCCTGTAATCCCGATGCCGATCAGATCATTTTGTGTATGTCG
AGCGTCCTGCAGGTCCAGATGCTGCATGATAAGCAAGCAGGAGGCAACGA
GGCCCTTCGGGAGAGATTCCGGGTGTTCGAGGCTCCCGTGACCGCAAGAA
CAGGAGCCTTGGGAGGAGGAGGAAGGGTGGCTGCAGCAGCAGCGGCAGCC
AAAGGTGGAGAAGGGATGATGGTGGTTGAGGAGGAGGAGGGGCAGCAGCA
ACAGCAGCAGCAAGAAGAGGGACTGGAAGAAGAGGTGACGGTTGAAGAGA
TCCATCATTTCATCGAAGGAATCTTCAAAAGATCGCGCTTCTCACCGGAG
TGTAATATCATTGCATTGGTGTACATCAACCGTGTCATTTCCACCACTTC
CCTCCCGCTCCATCCGCGTAATTGGAAATCCGTCGTCCTCGTCGCCCTCC
TCTTGGCTCAGAAAGTGTGGGACGATCGATGCGTGGCCTTGTCATCCTTC
TCCCAACACCTCCCCGATTTCCCCTTGGAGCGCATGCGCCTCGTCGAGCG
CAAATTTCTGGAGCTGCTTCAATACCGGGCGACGGTGTCACAAGCTCTCT
ACACCCGTTACTATTTTGAATTGCGGGCGTTGTTTGAAAAACTGTTGGAA
CAAGAGAGTATCTCGAGGGAATTTCCTCTCAAACCCATGGCCATGTGGCA
AGCCCGCAAGCTAGAGCTCTGCTCGGACTCCTTTGGCTTGCGCGCTCGCG
GGGCCAGCAGTAACAGTAATATTAGTGCTGCTTCCATCAGTATGAGTGGC
GGTTCCGCCAGTATGGGGGGACGGCCGCCTTCCTCCTCCACCTCCGCCTC
CTCTACCTTGCCTACCCGACCCTTGACGGGTGTGCAACCACACAGTCCGC
TTGAGCCCTTTGCCGCTGCTACAGCTGCTGCTGCTGGTGGCGGTGCAGCA
ACTCCTGGCTGTGGCCCGTTGCGTTCCTCCCTCCTGCGCCTCCCGCCCCC
CGGTCCCTCCAGCAAGCACCCTACCACCGTCTCGTACCCTTCGTCCTCCC
TCTCCAGCACTTCATCCACCTCGTCCTCGTCCTCGCGGAAGCCCCGAAAT
GTGACAGCTTCCGGGATCGCCCTCAATTCTCCCTGGACACCTCTCCCTCA
GTCCCCTTCTCCTACCTACGAAGATGTTACGTACATGCCCAAGGGCAGGT
ACGTGCAGAGTTAACGCGCGAAGGAGAAAGGAAGGGAGGGAGAAAGGGTG
TACGTGTACATAGAATGTCAGGTTTCAATCGTAGCAATTCTAAATTTA
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protein sequence of jgi.p|Nanoce1779_2|592821

>mRNA_5522-protein ID=mRNA_5522-protein|Name=jgi.p|Nanoce1779_2|592821|organism=Nannochloropsis oceanica|type=polypeptide|length=490bp
MEEESMPMATMQAQEDTDDDISKYFYKSSPECLEDSTNSISSRGNTAFSS
SVAGGSKTTDDVVTSVYRPLLMTGTTPNSTSSIFCRNTACNPDADQIILC
MSSVLQVQMLHDKQAGGNEALRERFRVFEAPVTARTGALGGGGRVAAAAA
AAKGGEGMMVVEEEEGQQQQQQQEEGLEEEVTVEEIHHFIEGIFKRSRFS
PECNIIALVYINRVISTTSLPLHPRNWKSVVLVALLLAQKVWDDRCVALS
SFSQHLPDFPLERMRLVERKFLELLQYRATVSQALYTRYYFELRALFEKL
LEQESISREFPLKPMAMWQARKLELCSDSFGLRARGASSNSNISAASISM
SGGSASMGGRPPSSSTSASSTLPTRPLTGVQPHSPLEPFAAATAAAAGGG
AATPGCGPLRSSLLRLPPPGPSSKHPTTVSYPSSSLSSTSSTSSSSSRKP
RNVTASGIALNSPWTPLPQSPSPTYEDVTYMPKGRYVQS*
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mRNA from alignment at scaffold_13:624189..625886-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5522 ID=mRNA_5522|Name=jgi.p|Nanoce1779_2|592821|organism=Nannochloropsis oceanica|type=mRNA|length=1698bp|location=Sequence derived from alignment at scaffold_13:624189..625886- (Nannochloropsis oceanica)
CAACAACAACAGCAGCAGCAACAAGCACCACCACAGCAGCCGGTGTCACA
GTACTTTCCCCACCAGCATCAACAGCTGAATCTGCTTGTACAGCAGCAGC
ACCAGCAGCACCAGCAGCACCAGCGGCAGCAGCACCAGCATGGAATGGAA
GAAGAAAGTATGCCCATGGCAACAATGCAAGCACAAGAGGACACCGACGA
CGACATCTCCAAATATTTTTACAAGTCCTCCCCGGAGTGTCTCGAGGACA
GCACCAACAGCATCAGCAGTCGCGGTAACACCGCCTTCTCCTCTTCCGTC
GCTGGTGGTAGTAAGACGACCGACGACGTTGTCACTTCTGTCTACCGTCC
CTTGCTCATGACGGGCACCACCCCCAACAGCACCAGCTCCATCTTCTGTC
GCAATACAGCCTGTAATCCCGATGCCGATCAGATCATTTTGTGTATGTCG
AGCGTCCTGCAGGTCCAGATGCTGCATGATAAGCAAGCAGGAGGCAACGA
GGCCCTTCGGGAGAGATTCCGGGTGTTCGAGGCTCCCGTGACCGCAAGAA
CAGGAGCCTTGGGAGGAGGAGGAAGGGTGGCTGCAGCAGCAGCGGCAGCC
AAAGGTGGAGAAGGGATGATGGTGGTTGAGGAGGAGGAGGGGCAGCAGCA
ACAGCAGCAGCAAGAAGAGGGACTGGAAGAAGAGGTGACGGTTGAAGAGA
TCCATCATTTCATCGAAGGAATCTTCAAAAGATCGCGCTTCTCACCGGAG
TGTAATATCATTGCATTGGTGTACATCAACCGTGTCATTTCCACCACTTC
CCTCCCGCTCCATCCGCGTAATTGGAAATCCGTCGTCCTCGTCGCCCTCC
TCTTGGCTCAGAAAGTGTGGGACGATCGATGCGTGGCCTTGTCATCCTTC
TCCCAACACCTCCCCGATTTCCCCTTGGAGCGCATGCGCCTCGTCGAGCG
CAAATTTCTGGAGCTGCTTCAATACCGGGCGACGGTGTCACAAGCTCTCT
ACACCCGTTACTATTTTGAATTGCGGGCGTTGTTTGAAAAACTGTTGGAA
CAAGAGAGTATCTCGAGGGAATTTCCTCTCAAACCCATGGCCATGTGGCA
AGCCCGCAAGCTAGAGCTCTGCTCGGACTCCTTTGGCTTGCGCGCTCGCG
GGGCCAGCAGTAACAGTAATATTAGTGCTGCTTCCATCAGTATGAGTGGC
GGTTCCGCCAGTATGGGGGGACGGCCGCCTTCCTCCTCCACCTCCGCCTC
CTCTACCTTGCCTACCCGACCCTTGACGGGTGTGCAACCACACAGTCCGC
TTGAGCCCTTTGCCGCTGCTACAGCTGCTGCTGCTGGTGGCGGTGCAGCA
ACTCCTGGCTGTGGCCCGTTGCGTTCCTCCCTCCTGCGCCTCCCGCCCCC
CGGTCCCTCCAGCAAGCACCCTACCACCGTCTCGTACCCTTCGTCCTCCC
TCTCCAGCACTTCATCCACCTCGTCCTCGTCCTCGCGGAAGCCCCGAAAT
GTGACAGCTTCCGGGATCGCCCTCAATTCTCCCTGGACACCTCTCCCTCA
GTCCCCTTCTCCTACCTACGAAGATGTTACGTACATGCCCAAGGGCAGGT
ACGTGCAGAGTTAACGCGCGAAGGAGAAAGGAAGGGAGGGAGAAAGGGTG
TACGTGTACATAGAATGTCAGGTTTCAATCGTAGCAATTCTAAATTTA
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Coding sequence (CDS) from alignment at scaffold_13:624189..625886-

>mRNA_5522 ID=mRNA_5522|Name=jgi.p|Nanoce1779_2|592821|organism=Nannochloropsis oceanica|type=CDS|length=1470bp|location=Sequence derived from alignment at scaffold_13:624189..625886- (Nannochloropsis oceanica)
ATGGAAGAAGAAAGTATGCCCATGGCAACAATGCAAGCACAAGAGGACAC
CGACGACGACATCTCCAAATATTTTTACAAGTCCTCCCCGGAGTGTCTCG
AGGACAGCACCAACAGCATCAGCAGTCGCGGTAACACCGCCTTCTCCTCT
TCCGTCGCTGGTGGTAGTAAGACGACCGACGACGTTGTCACTTCTGTCTA
CCGTCCCTTGCTCATGACGGGCACCACCCCCAACAGCACCAGCTCCATCT
TCTGTCGCAATACAGCCTGTAATCCCGATGCCGATCAGATCATTTTGTGT
ATGTCGAGCGTCCTGCAGGTCCAGATGCTGCATGATAAGCAAGCAGGAGG
CAACGAGGCCCTTCGGGAGAGATTCCGGGTGTTCGAGGCTCCCGTGACCG
CAAGAACAGGAGCCTTGGGAGGAGGAGGAAGGGTGGCTGCAGCAGCAGCG
GCAGCCAAAGGTGGAGAAGGGATGATGGTGGTTGAGGAGGAGGAGGGGCA
GCAGCAACAGCAGCAGCAAGAAGAGGGACTGGAAGAAGAGGTGACGGTTG
AAGAGATCCATCATTTCATCGAAGGAATCTTCAAAAGATCGCGCTTCTCA
CCGGAGTGTAATATCATTGCATTGGTGTACATCAACCGTGTCATTTCCAC
CACTTCCCTCCCGCTCCATCCGCGTAATTGGAAATCCGTCGTCCTCGTCG
CCCTCCTCTTGGCTCAGAAAGTGTGGGACGATCGATGCGTGGCCTTGTCA
TCCTTCTCCCAACACCTCCCCGATTTCCCCTTGGAGCGCATGCGCCTCGT
CGAGCGCAAATTTCTGGAGCTGCTTCAATACCGGGCGACGGTGTCACAAG
CTCTCTACACCCGTTACTATTTTGAATTGCGGGCGTTGTTTGAAAAACTG
TTGGAACAAGAGAGTATCTCGAGGGAATTTCCTCTCAAACCCATGGCCAT
GTGGCAAGCCCGCAAGCTAGAGCTCTGCTCGGACTCCTTTGGCTTGCGCG
CTCGCGGGGCCAGCAGTAACAGTAATATTAGTGCTGCTTCCATCAGTATG
AGTGGCGGTTCCGCCAGTATGGGGGGACGGCCGCCTTCCTCCTCCACCTC
CGCCTCCTCTACCTTGCCTACCCGACCCTTGACGGGTGTGCAACCACACA
GTCCGCTTGAGCCCTTTGCCGCTGCTACAGCTGCTGCTGCTGGTGGCGGT
GCAGCAACTCCTGGCTGTGGCCCGTTGCGTTCCTCCCTCCTGCGCCTCCC
GCCCCCCGGTCCCTCCAGCAAGCACCCTACCACCGTCTCGTACCCTTCGT
CCTCCCTCTCCAGCACTTCATCCACCTCGTCCTCGTCCTCGCGGAAGCCC
CGAAATGTGACAGCTTCCGGGATCGCCCTCAATTCTCCCTGGACACCTCT
CCCTCAGTCCCCTTCTCCTACCTACGAAGATGTTACGTACATGCCCAAGG
GCAGGTACGTGCAGAGTTAA
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Synonyms
Publications