jgi.p|Nanoce1779_2|592607, mRNA_5465 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592607
Unique NamemRNA_5465
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1364
Alignment locationscaffold_13:481778..483427 +

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Properties
Property NameValue
TranscriptId592693
TrackFilteredModels2
ProteinId592607
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:481778..483427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592607gene_5465Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592607mRNA_5465-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5465CDS_5465Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5465 ID=mRNA_5465|Name=jgi.p|Nanoce1779_2|592607|organism=Nannochloropsis oceanica|type=mRNA|length=1364bp
AACAGACGTACGTGTCATTCGCAGTGGTTTCGCCTCTCGTCCTCTCATAA
GCTTTCAAGGCACGCAACTTGAAACGCAGCTGCAGCCAAGGCGTGAATTG
AAGTAAAGCATGAAGGTCTTATTCCTCGGCGCAGCCGTCTTGCTCTTCGC
GCTTCCCATCCTCATCCAAGCCCGGCATCACAAGCCCGAGCAAATTCACA
TTGCGTTTGGGCAGACCTCGGACCTGGTGGCAGTGCAATGGTCAACCCGC
AGCTACGTGCAGCCACAGCAGCAGCAGCAGCAGCAGCAGCAGGTCGAGGA
GCCGCTCCAGCCTCATTCCTTTGTGCGCTGGGGCAAAGACCCGGCTCACC
TCGACAACGTTGCAGAGGGGCTCACTGTGGATTTTATCGACGGAGGGAAA
ACGAAGCGACGGCAGCGGCATCACATAGTGAACATGACGGGCCTCGAGGC
CTCGACTCGTTACCATTATCAGGTCGGAGACGAGACACTCAGCGACGGAC
TCTCTCAAATTTATTCCTTTAAGACTGCTCCTGACGCGGCTACCCTTGCT
GATAATTTGCCAGTACGTCTGGTTGTGTATGGTGATATGGGTGTGGATTT
AAACGGAAGTACAGTCATCAGGCATTTGTTGAAGCACTTGAATCGGGACC
CGGATTTATTTGATGGCGTTGTGCATGTAGGAGATTTTGCGTACGATATG
TACGAGAGAGAGGGAAAGCAGGGTGATTTCTTTATGCGGCAGATCGAACC
GATTGCTGCGAGGTTGCCATATATGACCTCGATGGGGAACCATGAGAAGG
CATACAACTTCCTGCACTACTCTGAACGCTTCCGGAACATGCCTGTCAGT
GACGGGGAGGTGGCCTCCAAGAATGGGCCGAATGCGCCCAACAATTGGTG
GTACTCCTTCAATCTTGGACCCGTGCATCTGGTGGCCGTCTCCACCGAAA
TTTACGATTTCGGCCCCTTGGACTATATCCCACGGCAGTACCAGTGGCTA
GGTACCATATCAAGCCCCTCGGGTCGTTCCCTTCGCGCATTTCTTATGTA
TCCCCTTCCTCTCTGTCCCTCGCCTTTGTTTTCCACCTCCAGAACGTAAG
TCCTCTTCCTCCTCCCTGATTTCCCTTTACAGAGGAGGATCTGAAGCGCG
CCAACTCCAACCGCACGCTCGCTCCTTGGATTATTGTCCACGGGCATAAA
CCTCTTTACTGCTCCAGCCCGACCCCCGAGAAATGCGACAACTGGTACAG
GAGCCAGAGGGAGGGCGTCCTCCTATCTGCTGCTGCTGCTGCTGCTTCTG
CTGCTGCTAATGCTAACCTCAGTACCACTGGGAATGCGCCTTGTCTTTCA
TCGTCTTTGCGAGG
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protein sequence of jgi.p|Nanoce1779_2|592607

>mRNA_5465-protein ID=mRNA_5465-protein|Name=jgi.p|Nanoce1779_2|592607|organism=Nannochloropsis oceanica|type=polypeptide|length=330bp
MKVLFLGAAVLLFALPILIQARHHKPEQIHIAFGQTSDLVAVQWSTRSYV
QPQQQQQQQQQVEEPLQPHSFVRWGKDPAHLDNVAEGLTVDFIDGGKTKR
RQRHHIVNMTGLEASTRYHYQVGDETLSDGLSQIYSFKTAPDAATLADNL
PVRLVVYGDMGVDLNGSTVIRHLLKHLNRDPDLFDGVVHVGDFAYDMYER
EGKQGDFFMRQIEPIAARLPYMTSMGNHEKAYNFLHYSERFRNMPVSDGE
VASKNGPNAPNNWWYSFNLGPVHLVAVSTEIYDFGPLDYIPRQYQWLGTI
SSPSGRSLRAFLMYPLPLCPSPLFSTSRT*
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mRNA from alignment at scaffold_13:481778..483427+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5465 ID=mRNA_5465|Name=jgi.p|Nanoce1779_2|592607|organism=Nannochloropsis oceanica|type=mRNA|length=1650bp|location=Sequence derived from alignment at scaffold_13:481778..483427+ (Nannochloropsis oceanica)
AACAGACGTACGTGTCATTCGCAGTGGTTTCGCCTCTCGTCCTCTCATAA GCTTTCAAGGCACGCAACTTGAAACGCAGCTGCAGCCAAGGCGTGAATTG AAGTAAAGCATGAAGGTCTTATTCCTCGGCGCAGCCGTCTTGCTCTTCGC GCTTCCCATCCTCATCCAAGCCCGGCATCACAAGCCCGAGCAAATTCACA TTGCGTTTGGGCAGACCTCGGACCTGGTGGCAGTGCAATGGTCAACCCGC AGCTACGTGCAGCCACAGCAGCAGCAGCAGCAGCAGCAGCAGGTCGAGGA GCCGCTCCAGCCTCATTCCTTTGTGCGCTGGGGCAAAGACCCGGCTCACC TCGACAACGTTGCAGAGGGGCTCACTGTGGATTTTATCGACGGAGGGAAA ACGAAGCGACGGCAGCGGCATCACATAGTGAACATGACGGGCCTCGAGGC CTCGACTCGTTACCATTATCAGGTCGGAGACGAGACACTCAGCGACGGAC TCTCTCAAATTTATTCCTTTAAGACTGCTCCTGACGCGGCTACCCTTGCT GATAATTTGCCAGTACGTCTGGTTGTGTATGGTGATATGGGTGTGGATTT AAACGGAAGTACAGTCATCAGGCATTTGTTGAAGCACTTGAATCGGGACC CGGATTTATTTGATGGCGTTGTGCATGTAGGAGATTTTGCGTACGATATG TACGAGAGAGAGGGAAAGCAGGGTGATTTCTTTATGCGGCAGATCGAACC GATTGCTGCGAGGTTGCCATATATGACCTCGATGGGGAACCATGAGAAGG TGAGGAAGGGAGGGAGGGAGGAAGGAAGGGAAGAAGGGAAGGAAGAGATG GATGAGGGAGTGTGGCACGATTGGAAAGGACAAGAGTGACATCATCGTCC CATTTCCTGATTAATACGCATATACACTCAGGCATACAACTTCCTGCACT ACTCTGAACGCTTCCGGAACATGCCTGTCAGTGACGGGGAGGTGGCCTCC AAGAATGGGCCGAATGCGCCCAACAATTGGTGAGCACGTGCCTGAGACGA TTGATGACGGTTAACAGATAAGAGTTGTCATTTTACTCCGCTAGCCTCTC CCCGCGACATCGTGAGAGCTGTACTGACACCCCTCCTATCTTCCCTTTCT CCCTCCCTCCCTCCCTCCCTCACCCCAAACTAGGTGGTACTCCTTCAATC TTGGACCCGTGCATCTGGTGGCCGTCTCCACCGAAATTTACGATTTCGGC CCCTTGGACTATATCCCACGGCAGTACCAGTGGCTAGGTACCATATCAAG CCCCTCGGGTCGTTCCCTTCGCGCATTTCTTATGTATCCCCTTCCTCTCT GTCCCTCGCCTTTGTTTTCCACCTCCAGAACGTAAGTCCTCTTCCTCCTC CCTGATTTCCCTTTACAGAGGAGGATCTGAAGCGCGCCAACTCCAACCGC ACGCTCGCTCCTTGGATTATTGTCCACGGGCATAAACCTCTTTACTGCTC CAGCCCGACCCCCGAGAAATGCGACAACTGGTACAGGAGCCAGAGGGAGG GCGTCCTCCTATCTGCTGCTGCTGCTGCTGCTTCTGCTGCTGCTAATGCT AACCTCAGTACCACTGGGAATGCGCCTTGTCTTTCATCGTCTTTGCGAGG
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Coding sequence (CDS) from alignment at scaffold_13:481778..483427+

>mRNA_5465 ID=mRNA_5465|Name=jgi.p|Nanoce1779_2|592607|organism=Nannochloropsis oceanica|type=CDS|length=2970bp|location=Sequence derived from alignment at scaffold_13:481778..483427+ (Nannochloropsis oceanica)
ATGAAGGTCTTATTCCTCGGCGCAGCCGTCTTGCTCTTCGCGCTTCCCAT
CCTCATCCAAGCCCGGCATCACAAGCCCGAGCAAATTCACATTGCGTTTG
GGCAGACCTCGGACCTGGTGGCAGTGCAATGGTCAACCCGCAGCTACGTG
CAGCCACAGCAGCAGCAGCAGCAGCAGCAGCAGGTCGAGGAGCCGCTCCA
GCCTCATTCCTTTGTGCGCTGGGGCAAAGACCCGGCTCACCTCGACAACG
TTGCAGAGGGGCTCACTGTGGATTTTATCGACGGAGGGAAAACGAAGCGA
CGGCAGCGGCATCACATAGTGAACATGACGGGCCTCGAGGCCTCGACTCG
TTACCATTATCAGGTCGGAGACGAGACACTCAGCGACGGACTCTCTCAAA
TTTATTCCTTTAAGACTGCTCCTGACGCGGCTACCCTTGCTGATAATTTG
CCAGTACGTCTGGTTGTGTATGGTGATATGGGTGTGGATTTAAACGGAAG
TACAGTCATCAGGCATTTGTTGAAGCACTTGAATCGGGACCCGGATTTAT
TTGATGGCGTTGTGCATGTAGGAGATTTTGCGTACGATATGTACGAGAGA
GAGGGAAAGCAGGGTGATTTCTTTATGCGGCAGATCGAACCGATTGCTGC
GAGGTTGCCATATATGACCTCGATGGGGAACCATGAGAAGGCATACAACT
TCCTGCACTACTCTGAACGCTTCCGGAACATGCCTGTCAGTGACGGGGAG
GTGGCCTCCAAGAATGGGCCGAATGCGCCCAACAATTGGTGGTACTCCTT
CAATCTTGGACCCGTGCATCTGGTGGCCGTCTCCACCGAAATTTACGATT
TCGGCCCCTTGGACTATATCCCACGGCAGTACCAGTGGCTAGGTACCATA
TCAAGCCCCTCGGGTCGTTCCCTTCGCGCATTTCTTATGTATCCCCTTCC
TCTCTGTCCCTCGCCTTTGTTTTCCACCTCCAGAACGTAAATGAAGGTCT
TATTCCTCGGCGCAGCCGTCTTGCTCTTCGCGCTTCCCATCCTCATCCAA
GCCCGGCATCACAAGCCCGAGCAAATTCACATTGCGTTTGGGCAGACCTC
GGACCTGGTGGCAGTGCAATGGTCAACCCGCAGCTACGTGCAGCCACAGC
AGCAGCAGCAGCAGCAGCAGCAGGTCGAGGAGCCGCTCCAGCCTCATTCC
TTTGTGCGCTGGGGCAAAGACCCGGCTCACCTCGACAACGTTGCAGAGGG
GCTCACTGTGGATTTTATCGACGGAGGGAAAACGAAGCGACGGCAGCGGC
ATCACATAGTGAACATGACGGGCCTCGAGGCCTCGACTCGTTACCATTAT
CAGGTCGGAGACGAGACACTCAGCGACGGACTCTCTCAAATTTATTCCTT
TAAGACTGCTCCTGACGCGGCTACCCTTGCTGATAATTTGCCAGTACGTC
TGGTTGTGTATGGTGATATGGGTGTGGATTTAAACGGAAGTACAGTCATC
AGGCATTTGTTGAAGCACTTGAATCGGGACCCGGATTTATTTGATGGCGT
TGTGCATGTAGGAGATTTTGCGTACGATATGTACGAGAGAGAGGGAAAGC
AGGGTGATTTCTTTATGCGGCAGATCGAACCGATTGCTGCGAGGTTGCCA
TATATGACCTCGATGGGGAACCATGAGAAGGCATACAACTTCCTGCACTA
CTCTGAACGCTTCCGGAACATGCCTGTCAGTGACGGGGAGGTGGCCTCCA
AGAATGGGCCGAATGCGCCCAACAATTGGTGGTACTCCTTCAATCTTGGA
CCCGTGCATCTGGTGGCCGTCTCCACCGAAATTTACGATTTCGGCCCCTT
GGACTATATCCCACGGCAGTACCAGTGGCTAGGTACCATATCAAGCCCCT
CGGGTCGTTCCCTTCGCGCATTTCTTATGTATCCCCTTCCTCTCTGTCCC
TCGCCTTTGTTTTCCACCTCCAGAACGTAAATGAAGGTCTTATTCCTCGG
CGCAGCCGTCTTGCTCTTCGCGCTTCCCATCCTCATCCAAGCCCGGCATC
ACAAGCCCGAGCAAATTCACATTGCGTTTGGGCAGACCTCGGACCTGGTG
GCAGTGCAATGGTCAACCCGCAGCTACGTGCAGCCACAGCAGCAGCAGCA
GCAGCAGCAGCAGGTCGAGGAGCCGCTCCAGCCTCATTCCTTTGTGCGCT
GGGGCAAAGACCCGGCTCACCTCGACAACGTTGCAGAGGGGCTCACTGTG
GATTTTATCGACGGAGGGAAAACGAAGCGACGGCAGCGGCATCACATAGT
GAACATGACGGGCCTCGAGGCCTCGACTCGTTACCATTATCAGGTCGGAG
ACGAGACACTCAGCGACGGACTCTCTCAAATTTATTCCTTTAAGACTGCT
CCTGACGCGGCTACCCTTGCTGATAATTTGCCAGTACGTCTGGTTGTGTA
TGGTGATATGGGTGTGGATTTAAACGGAAGTACAGTCATCAGGCATTTGT
TGAAGCACTTGAATCGGGACCCGGATTTATTTGATGGCGTTGTGCATGTA
GGAGATTTTGCGTACGATATGTACGAGAGAGAGGGAAAGCAGGGTGATTT
CTTTATGCGGCAGATCGAACCGATTGCTGCGAGGTTGCCATATATGACCT
CGATGGGGAACCATGAGAAGGCATACAACTTCCTGCACTACTCTGAACGC
TTCCGGAACATGCCTGTCAGTGACGGGGAGGTGGCCTCCAAGAATGGGCC
GAATGCGCCCAACAATTGGTGGTACTCCTTCAATCTTGGACCCGTGCATC
TGGTGGCCGTCTCCACCGAAATTTACGATTTCGGCCCCTTGGACTATATC
CCACGGCAGTACCAGTGGCTAGGTACCATATCAAGCCCCTCGGGTCGTTC
CCTTCGCGCATTTCTTATGTATCCCCTTCCTCTCTGTCCCTCGCCTTTGT
TTTCCACCTCCAGAACGTAA
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Synonyms
Publications