jgi.p|Nanoce1779_2|592265, mRNA_5363 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592265
Unique NamemRNA_5363
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2052
Alignment locationscaffold_13:249937..251988 -

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Properties
Property NameValue
TranscriptId592351
TrackFilteredModels2
ProteinId592265
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:249937..251988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592265gene_5363Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592265mRNA_5363-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5363CDS_5363Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5363 ID=mRNA_5363|Name=jgi.p|Nanoce1779_2|592265|organism=Nannochloropsis oceanica|type=mRNA|length=2052bp
ACAGGCATGGAAAAGAAACTCTCTATGCCCTCCCTGCAACTCTTTAGGCA
GCTCGTCAAGCATGGGCATCGCACCGCTATCGTGACATCTCAAACCGGCT
ACAGCCTGACGTACCGTGAGATACTGCGGGAGGCCACCCGAGTCTCAGCC
ATTTTGGAACAAACAGCAGGTCTACCGTCATCATCACCCACTTCGTCATC
CCTACGCCCTGTCGCTCTTCTAGCCCCACGGGACCACAGCTTTTGCGTCG
GCCACATAGCCGTGTTACATGCTGGTGCCGCAGTCGTACCGATACATTCG
CACAATTCGCCGGCCGAGACGGAATACATTTTGCGAGATGCCGGCTGTCG
ACAGATTTTGCTCCATCCCCAGCTCCGGTCCGCTGTCGAAACTGTGCTTT
ATAGCGCCAAGGGCCTTGACATAGAGATCGTGGAGCTGAAAGTGAGCGAG
AGCCATGCGATAGATGCCGACACTCTTCCTTCGTACGCAATAGCTCAAGG
GAAGAAGCACATGGAGGCATCAAGATCAGCCTCCCAGGACCTGGAATGGT
TTAAAATGTCAGAATCTACCGACGCGATGATTGTTTATACCAGCGGAAGC
ACGGGCCGCCCAAAGGGAGTGGTCAAGACGCACGCGCAGCTTGCGGAGAT
GTGCCGCGCTGTCGCGGAGGCATGGGCTTATACGCCAACGGACCGCGTCC
TGGAATTTTTGCCCTTGCATCACCTTCACGGGTTGCTTAACAAATTCTTG
GCAGTCCTGTGGGCGGGTGGAGCTGTCGAGCTCCTGGGTTCCCCCGCGGC
CGCCGCTATTTGGCGGCGACTCGCGGATCAAACCAAACCGCCGCTCACCA
TGTTTCATGCAGTGCCCACCATATATTCACTCATGCTGGAAGAGCTAGAG
TCCGGCCGCCTGGATGGAGCTTCGCAGGCAAACGCGCTAAAACATCTGCG
CGAAATGCGCCTCATGGTTAGCGGATCGGCTGCTCTACCTCAATCCAGAT
TTTTCGAGTGGGAAGTACTGACTGGCCACCGCCTTTTGGAAAGGTACGGA
ACCACGGAGGCTGGTATGATTCTTGGCAACTCCCTGACACCAATGTCCGC
GCGGTTTCCTGGGCATGTGGGGGCTCCGTTTCCGGGTGTCGAAGTTCGGT
TGGTGGACCCCGACACGGGTGCGGATGTGACGCGGAAGCCCGGAAAACAG
GGGGAGGTGCGTGTGCGATCACCAAAAGGCCTATTTAGTCGTTACCTTAA
TCAACCGGAGGCCACGTGCCAGGCCTTCGACGACGACAATTGGTATAAGA
CGGGAGATATGGGAGAGTTTGACACTGAGAAAGGTTTCAAAATCCTTGGG
CGCCTGTCTACCGATATCCTCAAATCCGGAGGATATAAGCTAAGTGCTTT
GGAAATTGAAGCCGCCATCGGGCAACACGAACGTGTTGCCGAAGTGTGTA
TTGTGGGGAAGCCACATCCCCTGTGGGGGGATGAGGTGGTGGCCGTCGTT
CGGTTAAAAAAGGGAGAGGGTGAGGGAGAAGAGGACAGCAGCAGCAGCAA
TAGCCTGAACTCGGAGTTGACCATGGAAGATCTCCGGACGTTCTTAGCCG
GCCGTTTGGCACCCTACAAAATGCCACGGGTACTACATGTTGTCAAATCA
CTCCCCAAAAATGCCATGGGTAAGGTCAACAAAAAGACGTTGTTGAAGGA
TCTGGGCATCATAGACGAGGTTTAAATGTGAATAGTGCCAAAAATAAAAA
AAGGTTGACGATCATTATGGGAAGAACTTGAGATGACACATTTCACTCGC
CAGATATTTTTCTCAGGTGTTTGGTATCGCGACGACGTTAGAAGAAAAAA
ATAAAAGAAACGTAAGGGGAAAATGAAGGAAGAAAGAATACCCGGCGGCA
AGGATGTTCAGGAGGCTGGAAAGCTATACGACAACAGTGAGCCCGAAAAG
CAAAGCAATATCGTTAAACGCAAGAGACATGACGTCTGCTCAGTGAAATA
CGCTTGACCCGTGCATTCGATTGACAGCTTTGGCAAAAACTTTACGCAAA
AT
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protein sequence of jgi.p|Nanoce1779_2|592265

>mRNA_5363-protein ID=mRNA_5363-protein|Name=jgi.p|Nanoce1779_2|592265|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp
MEKKLSMPSLQLFRQLVKHGHRTAIVTSQTGYSLTYREILREATRVSAIL
EQTAGLPSSSPTSSSLRPVALLAPRDHSFCVGHIAVLHAGAAVVPIHSHN
SPAETEYILRDAGCRQILLHPQLRSAVETVLYSAKGLDIEIVELKVSESH
AIDADTLPSYAIAQGKKHMEASRSASQDLEWFKMSESTDAMIVYTSGSTG
RPKGVVKTHAQLAEMCRAVAEAWAYTPTDRVLEFLPLHHLHGLLNKFLAV
LWAGGAVELLGSPAAAAIWRRLADQTKPPLTMFHAVPTIYSLMLEELESG
RLDGASQANALKHLREMRLMVSGSAALPQSRFFEWEVLTGHRLLERYGTT
EAGMILGNSLTPMSARFPGHVGAPFPGVEVRLVDPDTGADVTRKPGKQGE
VRVRSPKGLFSRYLNQPEATCQAFDDDNWYKTGDMGEFDTEKGFKILGRL
STDILKSGGYKLSALEIEAAIGQHERVAEVCIVGKPHPLWGDEVVAVVRL
KKGEGEGEEDSSSSNSLNSELTMEDLRTFLAGRLAPYKMPRVLHVVKSLP
KNAMGKVNKKTLLKDLGIIDEV*
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mRNA from alignment at scaffold_13:249937..251988-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5363 ID=mRNA_5363|Name=jgi.p|Nanoce1779_2|592265|organism=Nannochloropsis oceanica|type=mRNA|length=2052bp|location=Sequence derived from alignment at scaffold_13:249937..251988- (Nannochloropsis oceanica)
ACAGGCATGGAAAAGAAACTCTCTATGCCCTCCCTGCAACTCTTTAGGCA
GCTCGTCAAGCATGGGCATCGCACCGCTATCGTGACATCTCAAACCGGCT
ACAGCCTGACGTACCGTGAGATACTGCGGGAGGCCACCCGAGTCTCAGCC
ATTTTGGAACAAACAGCAGGTCTACCGTCATCATCACCCACTTCGTCATC
CCTACGCCCTGTCGCTCTTCTAGCCCCACGGGACCACAGCTTTTGCGTCG
GCCACATAGCCGTGTTACATGCTGGTGCCGCAGTCGTACCGATACATTCG
CACAATTCGCCGGCCGAGACGGAATACATTTTGCGAGATGCCGGCTGTCG
ACAGATTTTGCTCCATCCCCAGCTCCGGTCCGCTGTCGAAACTGTGCTTT
ATAGCGCCAAGGGCCTTGACATAGAGATCGTGGAGCTGAAAGTGAGCGAG
AGCCATGCGATAGATGCCGACACTCTTCCTTCGTACGCAATAGCTCAAGG
GAAGAAGCACATGGAGGCATCAAGATCAGCCTCCCAGGACCTGGAATGGT
TTAAAATGTCAGAATCTACCGACGCGATGATTGTTTATACCAGCGGAAGC
ACGGGCCGCCCAAAGGGAGTGGTCAAGACGCACGCGCAGCTTGCGGAGAT
GTGCCGCGCTGTCGCGGAGGCATGGGCTTATACGCCAACGGACCGCGTCC
TGGAATTTTTGCCCTTGCATCACCTTCACGGGTTGCTTAACAAATTCTTG
GCAGTCCTGTGGGCGGGTGGAGCTGTCGAGCTCCTGGGTTCCCCCGCGGC
CGCCGCTATTTGGCGGCGACTCGCGGATCAAACCAAACCGCCGCTCACCA
TGTTTCATGCAGTGCCCACCATATATTCACTCATGCTGGAAGAGCTAGAG
TCCGGCCGCCTGGATGGAGCTTCGCAGGCAAACGCGCTAAAACATCTGCG
CGAAATGCGCCTCATGGTTAGCGGATCGGCTGCTCTACCTCAATCCAGAT
TTTTCGAGTGGGAAGTACTGACTGGCCACCGCCTTTTGGAAAGGTACGGA
ACCACGGAGGCTGGTATGATTCTTGGCAACTCCCTGACACCAATGTCCGC
GCGGTTTCCTGGGCATGTGGGGGCTCCGTTTCCGGGTGTCGAAGTTCGGT
TGGTGGACCCCGACACGGGTGCGGATGTGACGCGGAAGCCCGGAAAACAG
GGGGAGGTGCGTGTGCGATCACCAAAAGGCCTATTTAGTCGTTACCTTAA
TCAACCGGAGGCCACGTGCCAGGCCTTCGACGACGACAATTGGTATAAGA
CGGGAGATATGGGAGAGTTTGACACTGAGAAAGGTTTCAAAATCCTTGGG
CGCCTGTCTACCGATATCCTCAAATCCGGAGGATATAAGCTAAGTGCTTT
GGAAATTGAAGCCGCCATCGGGCAACACGAACGTGTTGCCGAAGTGTGTA
TTGTGGGGAAGCCACATCCCCTGTGGGGGGATGAGGTGGTGGCCGTCGTT
CGGTTAAAAAAGGGAGAGGGTGAGGGAGAAGAGGACAGCAGCAGCAGCAA
TAGCCTGAACTCGGAGTTGACCATGGAAGATCTCCGGACGTTCTTAGCCG
GCCGTTTGGCACCCTACAAAATGCCACGGGTACTACATGTTGTCAAATCA
CTCCCCAAAAATGCCATGGGTAAGGTCAACAAAAAGACGTTGTTGAAGGA
TCTGGGCATCATAGACGAGGTTTAAATGTGAATAGTGCCAAAAATAAAAA
AAGGTTGACGATCATTATGGGAAGAACTTGAGATGACACATTTCACTCGC
CAGATATTTTTCTCAGGTGTTTGGTATCGCGACGACGTTAGAAGAAAAAA
ATAAAAGAAACGTAAGGGGAAAATGAAGGAAGAAAGAATACCCGGCGGCA
AGGATGTTCAGGAGGCTGGAAAGCTATACGACAACAGTGAGCCCGAAAAG
CAAAGCAATATCGTTAAACGCAAGAGACATGACGTCTGCTCAGTGAAATA
CGCTTGACCCGTGCATTCGATTGACAGCTTTGGCAAAAACTTTACGCAAA
AT
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Coding sequence (CDS) from alignment at scaffold_13:249937..251988-

>mRNA_5363 ID=mRNA_5363|Name=jgi.p|Nanoce1779_2|592265|organism=Nannochloropsis oceanica|type=CDS|length=1719bp|location=Sequence derived from alignment at scaffold_13:249937..251988- (Nannochloropsis oceanica)
ATGGAAAAGAAACTCTCTATGCCCTCCCTGCAACTCTTTAGGCAGCTCGT
CAAGCATGGGCATCGCACCGCTATCGTGACATCTCAAACCGGCTACAGCC
TGACGTACCGTGAGATACTGCGGGAGGCCACCCGAGTCTCAGCCATTTTG
GAACAAACAGCAGGTCTACCGTCATCATCACCCACTTCGTCATCCCTACG
CCCTGTCGCTCTTCTAGCCCCACGGGACCACAGCTTTTGCGTCGGCCACA
TAGCCGTGTTACATGCTGGTGCCGCAGTCGTACCGATACATTCGCACAAT
TCGCCGGCCGAGACGGAATACATTTTGCGAGATGCCGGCTGTCGACAGAT
TTTGCTCCATCCCCAGCTCCGGTCCGCTGTCGAAACTGTGCTTTATAGCG
CCAAGGGCCTTGACATAGAGATCGTGGAGCTGAAAGTGAGCGAGAGCCAT
GCGATAGATGCCGACACTCTTCCTTCGTACGCAATAGCTCAAGGGAAGAA
GCACATGGAGGCATCAAGATCAGCCTCCCAGGACCTGGAATGGTTTAAAA
TGTCAGAATCTACCGACGCGATGATTGTTTATACCAGCGGAAGCACGGGC
CGCCCAAAGGGAGTGGTCAAGACGCACGCGCAGCTTGCGGAGATGTGCCG
CGCTGTCGCGGAGGCATGGGCTTATACGCCAACGGACCGCGTCCTGGAAT
TTTTGCCCTTGCATCACCTTCACGGGTTGCTTAACAAATTCTTGGCAGTC
CTGTGGGCGGGTGGAGCTGTCGAGCTCCTGGGTTCCCCCGCGGCCGCCGC
TATTTGGCGGCGACTCGCGGATCAAACCAAACCGCCGCTCACCATGTTTC
ATGCAGTGCCCACCATATATTCACTCATGCTGGAAGAGCTAGAGTCCGGC
CGCCTGGATGGAGCTTCGCAGGCAAACGCGCTAAAACATCTGCGCGAAAT
GCGCCTCATGGTTAGCGGATCGGCTGCTCTACCTCAATCCAGATTTTTCG
AGTGGGAAGTACTGACTGGCCACCGCCTTTTGGAAAGGTACGGAACCACG
GAGGCTGGTATGATTCTTGGCAACTCCCTGACACCAATGTCCGCGCGGTT
TCCTGGGCATGTGGGGGCTCCGTTTCCGGGTGTCGAAGTTCGGTTGGTGG
ACCCCGACACGGGTGCGGATGTGACGCGGAAGCCCGGAAAACAGGGGGAG
GTGCGTGTGCGATCACCAAAAGGCCTATTTAGTCGTTACCTTAATCAACC
GGAGGCCACGTGCCAGGCCTTCGACGACGACAATTGGTATAAGACGGGAG
ATATGGGAGAGTTTGACACTGAGAAAGGTTTCAAAATCCTTGGGCGCCTG
TCTACCGATATCCTCAAATCCGGAGGATATAAGCTAAGTGCTTTGGAAAT
TGAAGCCGCCATCGGGCAACACGAACGTGTTGCCGAAGTGTGTATTGTGG
GGAAGCCACATCCCCTGTGGGGGGATGAGGTGGTGGCCGTCGTTCGGTTA
AAAAAGGGAGAGGGTGAGGGAGAAGAGGACAGCAGCAGCAGCAATAGCCT
GAACTCGGAGTTGACCATGGAAGATCTCCGGACGTTCTTAGCCGGCCGTT
TGGCACCCTACAAAATGCCACGGGTACTACATGTTGTCAAATCACTCCCC
AAAAATGCCATGGGTAAGGTCAACAAAAAGACGTTGTTGAAGGATCTGGG
CATCATAGACGAGGTTTAA
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Synonyms
Publications