jgi.p|Nanoce1779_2|592242, mRNA_5353 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592242
Unique Name	mRNA_5353
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1890
Alignment location	scaffold_13:224979..227014 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	592328
Track	FilteredModels2
ProteinId	592242

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:224979..227014 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592242	gene_5353	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592242	mRNA_5353-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5353	CDS_5353	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:224979..227014+
coding sequence from alignment at scaffold_13:224979..227014+

mRNA sequence

>mRNA_5353 ID=mRNA_5353|Name=jgi.p|Nanoce1779_2|592242|organism=Nannochloropsis oceanica|type=mRNA|length=1890bp
AGACAGCACAGCTCACAGCGGAGGACTAGAGACAAACACTTCTCGTCTTG
CGCATGTCCAGAGGTCGAAGCCCCCGGCGAAGAAGGCGTCGCGCTCCCTT
CCTAATCATCGTCATCATGCTCGCCGCCGTCACCAGTGGCCTGGCCTTTG
TACAGCAGCAGGCGCGTCTCCCTGCAAAGCTGCGGAAGCTTACGATAGGG
AAGCGAATGATTATGATACCTAAATCGATGAGTATTAAAAGCGCTCATCG
AATGGACGAAATAAGAGGTGCTACAGGTGGTGGACATGATGAGATGACCG
GTCCCTTGCTTCTAGACGAGAGGATTTCACTCGCCCCCATGATGGAGTAC
ACTGACAGGCACTTCCGTTTTTTCCTTCGCCTCCTTTCGAAACGCATGGT
CCTCTACACTGAAATGATTACGGCCCCTACCCTCTACCACAACAAAGACA
GCCGAGACCGCTTTCTCAAATTTAATGCCCCCGCCGAGCATCCTGTCGTG
CTACAACTTGGTGGCTCCGACCCTTTTTTGCTGTCAGAAGCGAGCCGGAT
TGCTCTTCCCTACAACTATGATGCAATAAATTTAAATTGTGGGTGCCCGA
GTGAGCGAGTATCGGGAAGGGGATGTTTTGGTGCAGCGCTGATGCGGGAG
CCTGAACGGGTGGCAGATATATGTACAGCTATGGGGGAGGGAAGTGAGGG
AAGAATTCCGATTACGGTGAAGTGTAGGATTGGGGTGGATGATGAAGATA
GCTATGAGCAACTGGCGGAATTTGTACGGCGAGTTTCGTGTGCTTCGCCG
GTCAGGCATTTTGTAGTCCATGCCCGCAAGGCGATCTTGGGGGGGTTGAG
TCCTGATCAGAATCGGAGGGTCCCTCCTTTGAAGTATCCGTTTGTCTATC
GTTTGTGTAAAGAGTTTCCGCACTTGAGATTTACATTGAATGGGGGAGTG
TTGTCTTATGAAGATGTGGAGACTCATTTGAAGGAGGGCGTGCACGGTGT
GATGGTGGGCAGGGCTATCATTGCCAGGCCGTTTTATTGGTCTGACATTG
ATGCACGGCTTTACGGGGCAGTGGGGGAGAATCCGGGCTTGACGAGGGGG
GAAATCTTGCACCAGTACGGGGCGTATGCGGAGGAAGAGGACGTCAGGGA
GGGAGGGAGGTTAAGACGATTGTTGACTAAGCCAGTGCATCATCTCTTCG
CGGGGGAGCCGATGGGGAAGAGGTTTCGGGCGGCTTTGGACCAGGCTTTA
CTTGACCCGACATTAGGCGTGCGGCAAGTGCTCGAGACGGCGACTGCTGT
GCTGCCACCTGCACTGTTGGAGGTGAAGCCAGGCTCGCCATCCATACCGG
CACCGGAGACAGTTCGGCATTAGATGGGGCTGCTAAGAGGAACCTTTATT
GAAGTAAGGAGGGATGTAGAATATGAGGTAAGCGACCGCGATTTTTGAAA
AAAGAAAATATGACGATAAAGTCGAAGAAATGTACAACAGCGTTGAAGAA
AGAGAGAGGGGGTAAGCGCTTAAAAACTCATCGGCGTCATCAAGGGGGGG
CCCTCCATCATTTTGGTTCCCTCTCTGCCCTTGATGATGAGAGCTAACTC
GCTTGGGATTAGCGAGACTAACGGCTTTATATGTCAAAAGCGCCGATCTA
GCCACGCGCTAAAAGCTGGATAGTTCAAGAAACAAAGAAGACTTTGTTAG
TGAGACAGAGAAGGGAGGTGACGGAGAAAGTGGGAACCATCGGGAGAAGC
AAAGTACAAATGTAGGACGCGTTCGTGTGTTCCAAAAGCAGCTTCCTAAA
CACGCAAAGGAAGAAGTAAAAACTCCTATCGGTATTTCGAAAAGTGTGTC
TACATTCAATATACTTACATGGTCATGTTTTTTTTACAAT

protein sequence of jgi.p|Nanoce1779_2|592242

>mRNA_5353-protein ID=mRNA_5353-protein|Name=jgi.p|Nanoce1779_2|592242|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MSRGRSPRRRRRRAPFLIIVIMLAAVTSGLAFVQQQARLPAKLRKLTIGK
RMIMIPKSMSIKSAHRMDEIRGATGGGHDEMTGPLLLDERISLAPMMEYT
DRHFRFFLRLLSKRMVLYTEMITAPTLYHNKDSRDRFLKFNAPAEHPVVL
QLGGSDPFLLSEASRIALPYNYDAINLNCGCPSERVSGRGCFGAALMREP
ERVADICTAMGEGSEGRIPITVKCRIGVDDEDSYEQLAEFVRRVSCASPV
RHFVVHARKAILGGLSPDQNRRVPPLKYPFVYRLCKEFPHLRFTLNGGVL
SYEDVETHLKEGVHGVMVGRAIIARPFYWSDIDARLYGAVGENPGLTRGE
ILHQYGAYAEEEDVREGGRLRRLLTKPVHHLFAGEPMGKRFRAALDQALL
DPTLGVRQVLETATAVLPPALLEVKPGSPSIPAPETVRH*

mRNA from alignment at scaffold_13:224979..227014+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5353 ID=mRNA_5353|Name=jgi.p|Nanoce1779_2|592242|organism=Nannochloropsis oceanica|type=mRNA|length=2036bp|location=Sequence derived from alignment at scaffold_13:224979..227014+ (Nannochloropsis oceanica)
AGACAGCACAGCTCACAGCGGAGGACTAGAGACAAACACTTCTCGTCTTG
CGCATGTCCAGAGGTCGAAGCCCCCGGCGAAGAAGGCGTCGCGCTCCCTT
CCTAATCATCGTCATCATGCTCGCCGCCGTCACCAGTGGCCTGGCCTTTG
TACAGCAGCAGGCGCGTCTCCCTGCAAAGCTGCGGAAGCTTACGATAGGG
AAGCGAATGATTATGATACCTAAATCGATGAGTATTAAAAGCGCTCATCG
AATGGACGAAATAAGAGGTGCTACAGGTGGTGGACATGATGAGATGACCG
GTCCCTTGCTTCTAGACGAGAGGATTTCACTCGCCCCCATGATGGAGTAC
ACTGACAGGTATGAAGGTAATATGTGGGCGCATTTTGCTCAAGACATACG
GGAGGTAATTGTTTGGCGTGTATGCCCCACGACGGCAGTCGAAGGAATGA
GGAACTCCCTCTAGTCATCGTGCTCACGTCCCTACCGCTCCCAATTTTCG
ACAGGCACTTCCGTTTTTTCCTTCGCCTCCTTTCGAAACGCATGGTCCTC
TACACTGAAATGATTACGGCCCCTACCCTCTACCACAACAAAGACAGCCG
AGACCGCTTTCTCAAATTTAATGCCCCCGCCGAGCATCCTGTCGTGCTAC
AACTTGGTGGCTCCGACCCTTTTTTGCTGTCAGAAGCGAGCCGGATTGCT
CTTCCCTACAACTATGATGCAATAAATTTAAATTGTGGGTGCCCGAGTGA
GCGAGTATCGGGAAGGGGATGTTTTGGTGCAGCGCTGATGCGGGAGCCTG
AACGGGTGGCAGATATATGTACAGCTATGGGGGAGGGAAGTGAGGGAAGA
ATTCCGATTACGGTGAAGTGTAGGATTGGGGTGGATGATGAAGATAGCTA
TGAGCAACTGGCGGAATTTGTACGGCGAGTTTCGTGTGCTTCGCCGGTCA
GGCATTTTGTAGTCCATGCCCGCAAGGCGATCTTGGGGGGGTTGAGTCCT
GATCAGAATCGGAGGGTCCCTCCTTTGAAGTATCCGTTTGTCTATCGTTT
GTGTAAAGAGTTTCCGCACTTGAGATTTACATTGAATGGGGGAGTGTTGT
CTTATGAAGATGTGGAGACTCATTTGAAGGAGGGCGTGCACGGTGTGATG
GTGGGCAGGGCTATCATTGCCAGGCCGTTTTATTGGTCTGACATTGATGC
ACGGCTTTACGGGGCAGTGGGGGAGAATCCGGGCTTGACGAGGGGGGAAA
TCTTGCACCAGTACGGGGCGTATGCGGAGGAAGAGGACGTCAGGGAGGGA
GGGAGGTTAAGACGATTGTTGACTAAGCCAGTGCATCATCTCTTCGCGGG
GGAGCCGATGGGGAAGAGGTTTCGGGCGGCTTTGGACCAGGCTTTACTTG
ACCCGACATTAGGCGTGCGGCAAGTGCTCGAGACGGCGACTGCTGTGCTG
CCACCTGCACTGTTGGAGGTGAAGCCAGGCTCGCCATCCATACCGGCACC
GGAGACAGTTCGGCATTAGATGGGGCTGCTAAGAGGAACCTTTATTGAAG
TAAGGAGGGATGTAGAATATGAGGTAAGCGACCGCGATTTTTGAAAAAAG
AAAATATGACGATAAAGTCGAAGAAATGTACAACAGCGTTGAAGAAAGAG
AGAGGGGGTAAGCGCTTAAAAACTCATCGGCGTCATCAAGGGGGGGCCCT
CCATCATTTTGGTTCCCTCTCTGCCCTTGATGATGAGAGCTAACTCGCTT
GGGATTAGCGAGACTAACGGCTTTATATGTCAAAAGCGCCGATCTAGCCA
CGCGCTAAAAGCTGGATAGTTCAAGAAACAAAGAAGACTTTGTTAGTGAG
ACAGAGAAGGGAGGTGACGGAGAAAGTGGGAACCATCGGGAGAAGCAAAG
TACAAATGTAGGACGCGTTCGTGTGTTCCAAAAGCAGCTTCCTAAACACG
CAAAGGAAGAAGTAAAAACTCCTATCGGTATTTCGAAAAGTGTGTCTACA
TTCAATATACTTACATGGTCATGTTTTTTTTACAAT

Coding sequence (CDS) from alignment at scaffold_13:224979..227014+

>mRNA_5353 ID=mRNA_5353|Name=jgi.p|Nanoce1779_2|592242|organism=Nannochloropsis oceanica|type=CDS|length=2640bp|location=Sequence derived from alignment at scaffold_13:224979..227014+ (Nannochloropsis oceanica)
ATGTCCAGAGGTCGAAGCCCCCGGCGAAGAAGGCGTCGCGCTCCCTTCCT
AATCATCGTCATCATGCTCGCCGCCGTCACCAGTGGCCTGGCCTTTGTAC
AGCAGCAGGCGCGTCTCCCTGCAAAGCTGCGGAAGCTTACGATAGGGAAG
CGAATGATTATGATACCTAAATCGATGAGTATTAAAAGCGCTCATCGAAT
GGACGAAATAAGAGGTGCTACAGGTGGTGGACATGATGAGATGACCGGTC
CCTTGCTTCTAGACGAGAGGATTTCACTCGCCCCCATGATGGAGTACACT
GACAGGCACTTCCGTTTTTTCCTTCGCCTCCTTTCGAAACGCATGGTCCT
CTACACTGAAATGATTACGGCCCCTACCCTCTACCACAACAAAGACAGCC
GAGACCGCTTTCTCAAATTTAATGCCCCCGCCGAGCATCCTGTCGTGCTA
CAACTTGGTGGCTCCGACCCTTTTTTGCTGTCAGAAGCGAGCCGGATTGC
TCTTCCCTACAACTATGATGCAATAAATTTAAATTGTGGGTGCCCGAGTG
AGCGAGTATCGGGAAGGGGATGTTTTGGTGCAGCGCTGATGCGGGAGCCT
GAACGGGTGGCAGATATATGTACAGCTATGGGGGAGGGAAGTGAGGGAAG
AATTCCGATTACGGTGAAGTGTAGGATTGGGGTGGATGATGAAGATAGCT
ATGAGCAACTGGCGGAATTTGTACGGCGAGTTTCGTGTGCTTCGCCGGTC
AGGCATTTTGTAGTCCATGCCCGCAAGGCGATCTTGGGGGGGTTGAGTCC
TGATCAGAATCGGAGGGTCCCTCCTTTGAAGTATCCGTTTGTCTATCGTT
TGTGTAAAGAGTTTCCGCACTTGAGATTTACATTGAATGGGGGAGTGTTG
TCTTATGAAGATGTGGAGACTCATTTGAAGGAGGGCGTGCACGGTGTGAT
GGTGGGCAGGGCTATCATTGCCAGGCCGTTTTATTGGTCTGACATTGATG
CACGGCTTTACGGGGCAGTGGGGGAGAATCCGGGCTTGACGAGGGGGGAA
ATCTTGCACCAGTACGGGGCGTATGCGGAGGAAGAGGACGTCAGGGAGGG
AGGGAGGTTAAGACGATTGTTGACTAAGCCAGTGCATCATCTCTTCGCGG
GGGAGCCGATGGGGAAGAGGTTTCGGGCGGCTTTGGACCAGGCTTTACTT
GACCCGACATTAGGCGTGCGGCAAGTGCTCGAGACGGCGACTGCTGTGCT
GCCACCTGCACTGTTGGAGGTGAAGCCAGGCTCGCCATCCATACCGGCAC
CGGAGACAGTTCGGCATTAGATGTCCAGAGGTCGAAGCCCCCGGCGAAGA
AGGCGTCGCGCTCCCTTCCTAATCATCGTCATCATGCTCGCCGCCGTCAC
CAGTGGCCTGGCCTTTGTACAGCAGCAGGCGCGTCTCCCTGCAAAGCTGC
GGAAGCTTACGATAGGGAAGCGAATGATTATGATACCTAAATCGATGAGT
ATTAAAAGCGCTCATCGAATGGACGAAATAAGAGGTGCTACAGGTGGTGG
ACATGATGAGATGACCGGTCCCTTGCTTCTAGACGAGAGGATTTCACTCG
CCCCCATGATGGAGTACACTGACAGGCACTTCCGTTTTTTCCTTCGCCTC
CTTTCGAAACGCATGGTCCTCTACACTGAAATGATTACGGCCCCTACCCT
CTACCACAACAAAGACAGCCGAGACCGCTTTCTCAAATTTAATGCCCCCG
CCGAGCATCCTGTCGTGCTACAACTTGGTGGCTCCGACCCTTTTTTGCTG
TCAGAAGCGAGCCGGATTGCTCTTCCCTACAACTATGATGCAATAAATTT
AAATTGTGGGTGCCCGAGTGAGCGAGTATCGGGAAGGGGATGTTTTGGTG
CAGCGCTGATGCGGGAGCCTGAACGGGTGGCAGATATATGTACAGCTATG
GGGGAGGGAAGTGAGGGAAGAATTCCGATTACGGTGAAGTGTAGGATTGG
GGTGGATGATGAAGATAGCTATGAGCAACTGGCGGAATTTGTACGGCGAG
TTTCGTGTGCTTCGCCGGTCAGGCATTTTGTAGTCCATGCCCGCAAGGCG
ATCTTGGGGGGGTTGAGTCCTGATCAGAATCGGAGGGTCCCTCCTTTGAA
GTATCCGTTTGTCTATCGTTTGTGTAAAGAGTTTCCGCACTTGAGATTTA
CATTGAATGGGGGAGTGTTGTCTTATGAAGATGTGGAGACTCATTTGAAG
GAGGGCGTGCACGGTGTGATGGTGGGCAGGGCTATCATTGCCAGGCCGTT
TTATTGGTCTGACATTGATGCACGGCTTTACGGGGCAGTGGGGGAGAATC
CGGGCTTGACGAGGGGGGAAATCTTGCACCAGTACGGGGCGTATGCGGAG
GAAGAGGACGTCAGGGAGGGAGGGAGGTTAAGACGATTGTTGACTAAGCC
AGTGCATCATCTCTTCGCGGGGGAGCCGATGGGGAAGAGGTTTCGGGCGG
CTTTGGACCAGGCTTTACTTGACCCGACATTAGGCGTGCGGCAAGTGCTC
GAGACGGCGACTGCTGTGCTGCCACCTGCACTGTTGGAGGTGAAGCCAGG
CTCGCCATCCATACCGGCACCGGAGACAGTTCGGCATTAG

Synonyms

Publications