jgi.p|Nanoce1779_2|592242, gene_5353 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592242
Unique Namegene_5353
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_13:224979..227014 +

Link to JBrowse

Properties
Property NameValue
TranscriptId592328
ProteinId592242
Product nametRNA-dihydrouridine synthase A-like
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:224979..227014 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0043738reduced coenzyme F420 dehydrogenase activity
GO:0043826sulfur oxygenase reductase activity
GO:0043883malolactic enzyme activity
GO:0017150tRNA dihydrouridine synthase activity
GO:0050660flavin adenine dinucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0051341regulation of oxidoreductase activity
GO:0008033tRNA processing
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL014ncniL014Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01950NO12G01950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592242mRNA_5353-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592242mRNA_5353Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|592242

>mRNA_5353-protein ID=mRNA_5353-protein|Name=jgi.p|Nanoce1779_2|592242|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MSRGRSPRRRRRRAPFLIIVIMLAAVTSGLAFVQQQARLPAKLRKLTIGK
RMIMIPKSMSIKSAHRMDEIRGATGGGHDEMTGPLLLDERISLAPMMEYT
DRHFRFFLRLLSKRMVLYTEMITAPTLYHNKDSRDRFLKFNAPAEHPVVL
QLGGSDPFLLSEASRIALPYNYDAINLNCGCPSERVSGRGCFGAALMREP
ERVADICTAMGEGSEGRIPITVKCRIGVDDEDSYEQLAEFVRRVSCASPV
RHFVVHARKAILGGLSPDQNRRVPPLKYPFVYRLCKEFPHLRFTLNGGVL
SYEDVETHLKEGVHGVMVGRAIIARPFYWSDIDARLYGAVGENPGLTRGE
ILHQYGAYAEEEDVREGGRLRRLLTKPVHHLFAGEPMGKRFRAALDQALL
DPTLGVRQVLETATAVLPPALLEVKPGSPSIPAPETVRH*
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Synonyms
Publications