jgi.p|Nanoce1779_2|64033, mRNA_5348 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|64033
Unique Name	mRNA_5348
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1738
Alignment location	scaffold_13:217273..219122 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	64119
Track	FilteredModels2
ProteinId	64033

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:217273..219122 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|64033	gene_5348	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|64033	mRNA_5348-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5348	CDS_5348	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:217273..219122+
coding sequence from alignment at scaffold_13:217273..219122+

mRNA sequence

>mRNA_5348 ID=mRNA_5348|Name=jgi.p|Nanoce1779_2|64033|organism=Nannochloropsis oceanica|type=mRNA|length=1738bp
TTGTGCAGTGTTAGACTTTGCGTGAGGTAGAGTAATCGACATTGCCTTGC
TCTCACTCAGTTGTGATTGCATCCCAATGCATACAATTTAATGTAATACT
CCTCCTTCTCCCCAACCGACCTTCTCTTCACCACACCTACCCCATTCTTA
CACCTAATACACATAGACCGCCCATCTTTATCTCCTTTTTCAGGCATTAG
GCTATCTAACCCCTGCCTCAAAGATGGAGAGCCTGTCGAAAGCCTACCAC
TTCCTGCGGAGAAACAGACGTGCCATTGGCCTGGTGGCAGGGGTGTCCGC
CGCCGGGCTGGCCATGTGGCGGGTGAAGCGGGTATTGGACGAGTACAAGC
GCCTCATCAAGGAGCATGATGTGGCCCGCTTGGATCAGCATCGGTTGCAA
ATGCACATGCTCAGATCCCGCGGGGAGTGTGTGCCAGCCCTGCTCAATTT
TATGCAGACCCTGCGGAAGCGCGTGAACGAAATTGTTGACGTGACTTCTC
CCGTCAAGGCGCTCAAGGCCGGTCGAGGGGAGCTGAGCAAAGAGCAAGAG
CAAGCTTTATGGCAGCAGGTGAAAGTGTCGGGTTTTACTCGCTTCTTTTT
GGCTTACTATGGCTTTACCTTGCTCAATGTGATGCTGCGTGTCCAGGTGC
ATATATTGGGTCGGTATGCTTTTGAGACGTCTCGACGAGAGATTGATGGC
GCACAGCAGCAGCAGCAGCAGCAGCAGCAGCACACTTGTAGCTTGAATGA
TGAACAGGTATATGCAGCTGCGGGCGCTCCTACGTTTGGGGCGGATGATA
GGTGCAAGTTGCTGTCTTTGGTATATGAGTTTTTCCTAGGGGAGGGGCTG
CGGCGGTTGAAAGAGAGTGTGGAGATAGTGATTAGCGAGGAGCTTGGAGG
TTGGTCAGTGCACGACAAGGTGCATGTGGGGTATGAGGAGCTGCATGATG
CCTTTTCGAGGATTCGTAGGAGGATGGAGGGGCCAAGGGGGGTGACGACG
GCGGAGTTGCCGTTGTTGCAGTATATCGTGGATATGAGTAGTATTACCGA
GGATGAGTTGGGTGGGGGTGGGAATATCTTGCATGAGATGGTGAATGAAA
CTTGGGACGCTTTGGAGAGCCCGAGTTTTAAGTTGGCGGTGGAGGATTGT
TTGGATGCGACATTCCGGGTGTTCTTGGAGGATTTATTTGTGTGCCTTTA
TGCTTCCCGACCAGCGCCAGCATCGCTGGCGAGCAAGACGATCGGGCGCA
TGAGGAATGTGGAAGAGGAGGAGGATGCGAAAGGAAGGATGGGGGAAGGG
AAGGAAAGGGGGGGCTTTCTGCAGGAACCGCAAGAGACGGGCCAGGATTC
AAGCCCGGAGAGTAATCCAGGGCAGGGAGGAAAGGCGTCTGACAAGGACC
CACCGTTGGCGAAGCTGATACCTCATATGAAGAACGCAGCGACCAAGGTG
TTCAATAATGACCCGCAGAGCAACGAGTATATTCGAGTGACGGCTCAGAA
TCGAAGCGTGAATTTGCTGTGTTCTTCATTTTTTACGACCGAGATATCAT
TTGTCTAGGCCAAAATAAAGTGTGGGGAGGTTCGATCGAACATATGTATA
GGATACCATAGCACATACACAAAGACACTTCCTGCCTGCATATGTATGCA
TTTACGACAATTCTCCTAGAATTGTGGGACAAACCAAAGAATTAATTTCC
CATCCCGTCCTTGCTGCCGCTGAGAAGCTGTGACCCCT

protein sequence of jgi.p|Nanoce1779_2|64033

>mRNA_5348-protein ID=mRNA_5348-protein|Name=jgi.p|Nanoce1779_2|64033|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp
MESLSKAYHFLRRNRRAIGLVAGVSAAGLAMWRVKRVLDEYKRLIKEHDV
ARLDQHRLQMHMLRSRGECVPALLNFMQTLRKRVNEIVDVTSPVKALKAG
RGELSKEQEQALWQQVKVSGFTRFFLAYYGFTLLNVMLRVQVHILGRYAF
ETSRREIDGAQQQQQQQQQHTCSLNDEQVYAAAGAPTFGADDRCKLLSLV
YEFFLGEGLRRLKESVEIVISEELGGWSVHDKVHVGYEELHDAFSRIRRR
MEGPRGVTTAELPLLQYIVDMSSITEDELGGGGNILHEMVNETWDALESP
SFKLAVEDCLDATFRVFLEDLFVCLYASRPAPASLASKTIGRMRNVEEEE
DAKGRMGEGKERGGFLQEPQETGQDSSPESNPGQGGKASDKDPPLAKLIP
HMKNAATKVFNNDPQSNEYIRVTAQNRSVNLLCSSFFTTEISFV*

mRNA from alignment at scaffold_13:217273..219122+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5348 ID=mRNA_5348|Name=jgi.p|Nanoce1779_2|64033|organism=Nannochloropsis oceanica|type=mRNA|length=1850bp|location=Sequence derived from alignment at scaffold_13:217273..219122+ (Nannochloropsis oceanica)
TTGTGCAGTGTTAGACTTTGCGTGAGGTAGAGTAATCGACATTGCCTTGC
TCTCACTCAGTTGTGATTGCATCCCAATGCATACAATTTAATGTAATACT
CCTCCTTCTCCCCAACCGACCTTCTCTTCACCACACCTACCCCATTCTTA
CACCTAATACACATAGACCGCCCATCTTTATCTCCTTTTTCAGGCATTAG
GCTATCTAACCCCTGCCTCAAAGATGGAGAGCCTGTCGAAAGCCTACCAC
TTCCTGCGGAGAAACAGACGTGCCATTGGCCTGGTGGCAGGGGTGTCCGC
CGCCGGGCTGGCCATGTGGCGGGTGAAGCGGGTATTGGACGAGTACAAGC
GCCTCATCAAGGAGCATGATGTGGCCCGCTTGGATCAGCATCGGTAGGTT
TGTCTTTGATTTTGTTGTTGTCGCATCTGAGGGTATGGGCGTGTGGGAAA
TGCCACCAGACCCGACCCTCTCATCACCCATTTCCCACGCCCCACACTAC
TACAGGTTGCAAATGCACATGCTCAGATCCCGCGGGGAGTGTGTGCCAGC
CCTGCTCAATTTTATGCAGACCCTGCGGAAGCGCGTGAACGAAATTGTTG
ACGTGACTTCTCCCGTCAAGGCGCTCAAGGCCGGTCGAGGGGAGCTGAGC
AAAGAGCAAGAGCAAGCTTTATGGCAGCAGGTGAAAGTGTCGGGTTTTAC
TCGCTTCTTTTTGGCTTACTATGGCTTTACCTTGCTCAATGTGATGCTGC
GTGTCCAGGTGCATATATTGGGTCGGTATGCTTTTGAGACGTCTCGACGA
GAGATTGATGGCGCACAGCAGCAGCAGCAGCAGCAGCAGCAGCACACTTG
TAGCTTGAATGATGAACAGGTATATGCAGCTGCGGGCGCTCCTACGTTTG
GGGCGGATGATAGGTGCAAGTTGCTGTCTTTGGTATATGAGTTTTTCCTA
GGGGAGGGGCTGCGGCGGTTGAAAGAGAGTGTGGAGATAGTGATTAGCGA
GGAGCTTGGAGGTTGGTCAGTGCACGACAAGGTGCATGTGGGGTATGAGG
AGCTGCATGATGCCTTTTCGAGGATTCGTAGGAGGATGGAGGGGCCAAGG
GGGGTGACGACGGCGGAGTTGCCGTTGTTGCAGTATATCGTGGATATGAG
TAGTATTACCGAGGATGAGTTGGGTGGGGGTGGGAATATCTTGCATGAGA
TGGTGAATGAAACTTGGGACGCTTTGGAGAGCCCGAGTTTTAAGTTGGCG
GTGGAGGATTGTTTGGATGCGACATTCCGGGTGTTCTTGGAGGATTTATT
TGTGTGCCTTTATGCTTCCCGACCAGCGCCAGCATCGCTGGCGAGCAAGA
CGATCGGGCGCATGAGGAATGTGGAAGAGGAGGAGGATGCGAAAGGAAGG
ATGGGGGAAGGGAAGGAAAGGGGGGGCTTTCTGCAGGAACCGCAAGAGAC
GGGCCAGGATTCAAGCCCGGAGAGTAATCCAGGGCAGGGAGGAAAGGCGT
CTGACAAGGACCCACCGTTGGCGAAGCTGATACCTCATATGAAGAACGCA
GCGACCAAGGTGTTCAATAATGACCCGCAGAGCAACGAGTATATTCGAGT
GACGGCTCAGAATCGAAGCGTGAATTTGCTGTGTTCTTCATTTTTTACGA
CCGAGATATCATTTGTCTAGGCCAAAATAAAGTGTGGGGAGGTTCGATCG
AACATATGTATAGGATACCATAGCACATACACAAAGACACTTCCTGCCTG
CATATGTATGCATTTACGACAATTCTCCTAGAATTGTGGGACAAACCAAA
GAATTAATTTCCCATCCCGTCCTTGCTGCCGCTGAGAAGCTGTGACCCCT

Coding sequence (CDS) from alignment at scaffold_13:217273..219122+

>mRNA_5348 ID=mRNA_5348|Name=jgi.p|Nanoce1779_2|64033|organism=Nannochloropsis oceanica|type=CDS|length=2670bp|location=Sequence derived from alignment at scaffold_13:217273..219122+ (Nannochloropsis oceanica)
ATGGAGAGCCTGTCGAAAGCCTACCACTTCCTGCGGAGAAACAGACGTGC
CATTGGCCTGGTGGCAGGGGTGTCCGCCGCCGGGCTGGCCATGTGGCGGG
TGAAGCGGGTATTGGACGAGTACAAGCGCCTCATCAAGGAGCATGATGTG
GCCCGCTTGGATCAGCATCGGTTGCAAATGCACATGCTCAGATCCCGCGG
GGAGTGTGTGCCAGCCCTGCTCAATTTTATGCAGACCCTGCGGAAGCGCG
TGAACGAAATTGTTGACGTGACTTCTCCCGTCAAGGCGCTCAAGGCCGGT
CGAGGGGAGCTGAGCAAAGAGCAAGAGCAAGCTTTATGGCAGCAGGTGAA
AGTGTCGGGTTTTACTCGCTTCTTTTTGGCTTACTATGGCTTTACCTTGC
TCAATGTGATGCTGCGTGTCCAGGTGCATATATTGGGTCGGTATGCTTTT
GAGACGTCTCGACGAGAGATTGATGGCGCACAGCAGCAGCAGCAGCAGCA
GCAGCAGCACACTTGTAGCTTGAATGATGAACAGGTATATGCAGCTGCGG
GCGCTCCTACGTTTGGGGCGGATGATAGGTGCAAGTTGCTGTCTTTGGTA
TATGAGTTTTTCCTAGGGGAGGGGCTGCGGCGGTTGAAAGAGAGTGTGGA
GATAGTGATTAGCGAGGAGCTTGGAGGTTGGTCAGTGCACGACAAGGTGC
ATGTGGGGTATGAGGAGCTGCATGATGCCTTTTCGAGGATTCGTAGGAGG
ATGGAGGGGCCAAGGGGGGTGACGACGGCGGAGTTGCCGTTGTTGCAGTA
TATCGTGGATATGAGTAGTATTACCGAGGATGAGTTGGGTGGGGGTGGGA
ATATCTTGCATGAGATGGTGAATGAAACTTGGGACGCTTTGGAGAGCCCG
AGTTTTAAGTTGGCGGTGGAGGATTGTTTGGATGCGACATTCCGGGTGTT
CTTGGAGGATTTATTTGTGTGCCTTTATGCTTCCCGACCAGCGCCAGCAT
CGCTGGCGAGCAAGACGATCGGGCGCATGAGGAATGTGGAAGAGGAGGAG
GATGCGAAAGGAAGGATGGGGGAAGGGAAGGAAAGGGGGGGCTTTCTGCA
GGAACCGCAAGAGACGGGCCAGGATTCAAGCCCGGAGAGTAATCCAGGGC
AGGGAGGAAAGGCGTCTGACAAGGACCCACCGTTGGCGAAGCTGATACCT
CATATGAAGAACGCAGCGACCAAGGTGTTCAATAATGACCCGCAGAGCAA
CGAGTATATTCGAGTGACGGCTCAGAATCGAAGCGTGAATTTGCTGTGTT
CTTCATTTTTTACGACCGAGATATCATTTGTCTAGATGGAGAGCCTGTCG
AAAGCCTACCACTTCCTGCGGAGAAACAGACGTGCCATTGGCCTGGTGGC
AGGGGTGTCCGCCGCCGGGCTGGCCATGTGGCGGGTGAAGCGGGTATTGG
ACGAGTACAAGCGCCTCATCAAGGAGCATGATGTGGCCCGCTTGGATCAG
CATCGGTTGCAAATGCACATGCTCAGATCCCGCGGGGAGTGTGTGCCAGC
CCTGCTCAATTTTATGCAGACCCTGCGGAAGCGCGTGAACGAAATTGTTG
ACGTGACTTCTCCCGTCAAGGCGCTCAAGGCCGGTCGAGGGGAGCTGAGC
AAAGAGCAAGAGCAAGCTTTATGGCAGCAGGTGAAAGTGTCGGGTTTTAC
TCGCTTCTTTTTGGCTTACTATGGCTTTACCTTGCTCAATGTGATGCTGC
GTGTCCAGGTGCATATATTGGGTCGGTATGCTTTTGAGACGTCTCGACGA
GAGATTGATGGCGCACAGCAGCAGCAGCAGCAGCAGCAGCAGCACACTTG
TAGCTTGAATGATGAACAGGTATATGCAGCTGCGGGCGCTCCTACGTTTG
GGGCGGATGATAGGTGCAAGTTGCTGTCTTTGGTATATGAGTTTTTCCTA
GGGGAGGGGCTGCGGCGGTTGAAAGAGAGTGTGGAGATAGTGATTAGCGA
GGAGCTTGGAGGTTGGTCAGTGCACGACAAGGTGCATGTGGGGTATGAGG
AGCTGCATGATGCCTTTTCGAGGATTCGTAGGAGGATGGAGGGGCCAAGG
GGGGTGACGACGGCGGAGTTGCCGTTGTTGCAGTATATCGTGGATATGAG
TAGTATTACCGAGGATGAGTTGGGTGGGGGTGGGAATATCTTGCATGAGA
TGGTGAATGAAACTTGGGACGCTTTGGAGAGCCCGAGTTTTAAGTTGGCG
GTGGAGGATTGTTTGGATGCGACATTCCGGGTGTTCTTGGAGGATTTATT
TGTGTGCCTTTATGCTTCCCGACCAGCGCCAGCATCGCTGGCGAGCAAGA
CGATCGGGCGCATGAGGAATGTGGAAGAGGAGGAGGATGCGAAAGGAAGG
ATGGGGGAAGGGAAGGAAAGGGGGGGCTTTCTGCAGGAACCGCAAGAGAC
GGGCCAGGATTCAAGCCCGGAGAGTAATCCAGGGCAGGGAGGAAAGGCGT
CTGACAAGGACCCACCGTTGGCGAAGCTGATACCTCATATGAAGAACGCA
GCGACCAAGGTGTTCAATAATGACCCGCAGAGCAACGAGTATATTCGAGT
GACGGCTCAGAATCGAAGCGTGAATTTGCTGTGTTCTTCATTTTTTACGA
CCGAGATATCATTTGTCTAG

Synonyms

Publications