Properties
Property Name | Value |
TranscriptId | 591913 |
Track | FilteredModels2 |
ProteinId | 591827 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_12 | supercontig | scaffold_12:790622..793804 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5236 ID=mRNA_5236|Name=jgi.p|Nanoce1779_2|591827|organism=Nannochloropsis oceanica|type=mRNA|length=3183bp ACAGCATCATGCCGACCGACAAGAAGGAGGAAACTTTGGGGTTGCTAAAG ACGTCAAAGAAGAAGGCGGTGGAGTACGGTGCTGCAGCCTCTGCTGCCTC TCCTAGATCACAGAATTATTCCTCCCCGCGCTCCTCAGAGGGCGAGCTCT ACACGGCTCTGACTAAAACGACCACCACGAGCCGCATCCGAATTGCCAAT CTTTGCTGCTCCATGGAGACTAAGCTCGTCACGGAGTTGCTTAAGCCGCT CAAGGGCGTGTTGGATGTGAAGGTCAGTGAAGTGGGCCGCGTCGCCGTGG TTCGTCATACCGAGCCCGCCACGGCCACCCTCCTTCTATCCACCCTTAAC GCCGCGCACCTGGGCGCTACGCTTCAAGAGGTCCACACCAGCCACCACAA GGATGCCGAGGACCAGGATCAAGAGCATTGCTCGGATTGGGCCGGTCAAA AACGCCTGCGAGCTTGCCTTGGCACCATGAACCGTGATGCCGGCCCGTGG GCAGCTCTCTTCGTCGCCAGCGTCGGATGGGTGCTGTCGTTGGTCGGACA CTACTTCGATTGGTCAAATACCCTACAATGGGCCACGGCCGGGCCCTGCC TCCTCCTAGCTTTCATGCCCTTGGCCTTGCCTTTATTGCGGGCCGTGCAA CACAGACGGGTGGATGTAAATGTGCTCATGGGGGTGGCTGTGTTAGGAGC CGTGTTACTCGGGGATTTACCGGAGGCTCTGGGGGTACTCCTACTGGTAC TACTAGCGAGTCGGGCGCGATCCGCGGCGCTTGATTATGTGGCACGGTTG CTGGATTCGACGACCGGCCGACTGGTCCAAGCCCAGGTGGCCCATGTTGT CTCGTTTGCTGCTACTGCTGCAGCTACAGATGGAGGACAAGGGCAGCCGA AGGCCGGTAAGGATGTAATGGCAGATGTGCCGTTGACCGCCGTTAAGGTG GGAGACGTGGTACTCGTCCGTGCCGGGGAGCAAGCCCCTGTGGATGGGGT AGTAGTGCATGGAGAGGGGGTGATGGACGAGTCTGCCTTAACGGGTGAAT GCATGCCGGTCGAGAAGAAGAAAGGGAGCCTGGTGGCAGGAGGGAGCATC TGTCAGACGGGTGCGTTGGAGGTACGATGCACGGCCCCGGCGAGTCAGTC GAGCTTGCGAGTGATCCAGGATTTGGTGCATGATATCGCCACTACCCATG CGCCCTCTCAAGAGCTACTCGATCGCTTCGCCTCCTACTATACTCCTATC GCGCTCGCCCTCTCCTTCTCTATGGCTCTTGCTCCAGAGGTCTGGGCGCT GCTACGAGGGGAAGGTGTGACCGAGCGAGGATGGCAGGGGGCCCTGTATC GAGGGCTGGATCTTCTGGTTCTTGCGTGCCCCTGTGCCCTGGCGATGGCC ACCCCTTTGCCCTTCCTCACCACTCTGGCAGCATCGGCGGCGCGGGCAGG GGTACTGTTCAAGAGCGCGACGGCCTTAGAGGCGCTGAGCACCGTGCAGG TGCTGGCCTTGGACAAAACGGGAACTTTGACGGAAGGCCGGTTTCAGGTC AGTGGAAGAATACCACTGAAGAGGACGGCCAAGCTCGATCCTGAGGTGGT ACGACTGCTGGCGGCTAGTGTGGAGAGTGTCGTCGCCCATCGTTTGTCTG CAGCGGTGGTGATGGATGCATTGGGATGTGTGACGGATGCGTTTTATGCC GCCAAAGCAGGAGGAGGGAAGGGGAGGTACGGTGGTGATGGGAATGGAAG GAACAACAAGAAGGTGCTAGCCAAGGTATCAAAGTTGCGACATTTGGAAG GAGTAGGGGTGGAGGGGGTGTGTGTGTTCGAGGAGGCGGCCGAGCCGGAG GGGGGCTATTTGGTGCGAGTAGGGAATAGCGCCCTGCTGCAAAAGGAGGA TTTGAACGACCGTGCATTGCAAGCTTTCCTGGCCCGCTACCCGGGCGAGG CGCATTTGTATGTGGTGGTAGACGGCATTCCAGAATTGGCTCTCAGCCTT GCGGATCGCCTGCGACCAGAGTCAGGGCCCATGCTAAAGGTCCTCGTAGA CGAGCTCAAGATCGAAACGACGCTCTTGACAGGAGATTCTTTGGAGGTAG CCAAGGCCGTGCAAGCTCGCCTCGGGCCCAAACTCCTCCCCACGATCCGG GCGAGGATGAAACCCGTCGATAAATTTCATTGGATTGAAGCACGGCAGCT CCAACCGCCCTCTTCTCGAGCGGCCACGTCGGCTTTGCGTCGTTCTTCGG TCTTTGCTTATTTGGCTGTGCCTTTTTCAGGGAGCAAGGCATCTTCCTAC CAGGTTACGGACGAGCCGGAGAGCTTGGATGACCTAGAAGCAGCGGCAGG TCTATCACGCTCCGAGGAAGAGTATTCGCACGAGGGGCTCTTCAGCCGTA TCTTTTCCCGACGCAACACGTCCTCCTCCATCACCAATCTGTCCGTACAA GGACAGCAGCCGCAGCTGCTACCGATGAAACAATGCATCGTCGCCATGAT TGGTGACGGGATCAACGACGCCCCCTCCCTGCGTGCTGCGGACGTGGGAC TGGCGATGGGGGAGCACGGCACGGCTTTGGCTGTGCAGGCCGCCGACGTG GTGTTGCTGACGGATGATCTTTCCCGGATCCCCCAGGCCATTCGCATGTC TCATTTCGTGCGATGGGTGGTGGTGCAGAATTTATTTTTGGCGCTGGGTT TGAAGGTATTGCTGATGCTGTTGGTGCTCTTGGGACGTGAGGTACAGCTG TGGGAGGCGGTAGCGAGCGATGGCTTAAGCTTGATGGCCGTAATCATAAA TGGGCTGCGGCCCTTGTACATGGCGCGAAAGATTTATGTGTAGATTTGTT TGTGGGTGGGTAGGGACGGATGGAGAGGAAGGGACCATGGTTGGATGGTC TGGTTTGAAGGGAATGAGATAGGGTAGGGCTGGATTGGGAACTTGTCCGA TGAGTACGGAGGGAGGAAGGGCGATGGCCTGAGAAGGGTGGACCGGTTGG ACACGTTAGTGTATATATGAAAAGTGATAACACGTCGGTACAAGTTTTGA AAGCATAAAAGCGAAAGAAGAAGCGGTAATGAGCTACAGAGCTTTAAGTG CAGCAGGGACAGTTTCCTTTCTAACTTCCCCAAACAAGATGCGAACTCGA GCCAAAGGAAGATCCGTTTACCACAGAAATAAG back to topprotein sequence of jgi.p|Nanoce1779_2|591827 >mRNA_5236-protein ID=mRNA_5236-protein|Name=jgi.p|Nanoce1779_2|591827|organism=Nannochloropsis oceanica|type=polypeptide|length=945bp MPTDKKEETLGLLKTSKKKAVEYGAAASAASPRSQNYSSPRSSEGELYTA LTKTTTTSRIRIANLCCSMETKLVTELLKPLKGVLDVKVSEVGRVAVVRH TEPATATLLLSTLNAAHLGATLQEVHTSHHKDAEDQDQEHCSDWAGQKRL RACLGTMNRDAGPWAALFVASVGWVLSLVGHYFDWSNTLQWATAGPCLLL AFMPLALPLLRAVQHRRVDVNVLMGVAVLGAVLLGDLPEALGVLLLVLLA SRARSAALDYVARLLDSTTGRLVQAQVAHVVSFAATAAATDGGQGQPKAG KDVMADVPLTAVKVGDVVLVRAGEQAPVDGVVVHGEGVMDESALTGECMP VEKKKGSLVAGGSICQTGALEVRCTAPASQSSLRVIQDLVHDIATTHAPS QELLDRFASYYTPIALALSFSMALAPEVWALLRGEGVTERGWQGALYRGL DLLVLACPCALAMATPLPFLTTLAASAARAGVLFKSATALEALSTVQVLA LDKTGTLTEGRFQVSGRIPLKRTAKLDPEVVRLLAASVESVVAHRLSAAV VMDALGCVTDAFYAAKAGGGKGRYGGDGNGRNNKKVLAKVSKLRHLEGVG VEGVCVFEEAAEPEGGYLVRVGNSALLQKEDLNDRALQAFLARYPGEAHL YVVVDGIPELALSLADRLRPESGPMLKVLVDELKIETTLLTGDSLEVAKA VQARLGPKLLPTIRARMKPVDKFHWIEARQLQPPSSRAATSALRRSSVFA YLAVPFSGSKASSYQVTDEPESLDDLEAAAGLSRSEEEYSHEGLFSRIFS RRNTSSSITNLSVQGQQPQLLPMKQCIVAMIGDGINDAPSLRAADVGLAM GEHGTALAVQAADVVLLTDDLSRIPQAIRMSHFVRWVVVQNLFLALGLKV LLMLLVLLGREVQLWEAVASDGLSLMAVIINGLRPLYMARKIYV* back to topmRNA from alignment at scaffold_12:790622..793804+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5236 ID=mRNA_5236|Name=jgi.p|Nanoce1779_2|591827|organism=Nannochloropsis oceanica|type=mRNA|length=3183bp|location=Sequence derived from alignment at scaffold_12:790622..793804+ (Nannochloropsis oceanica) ACAGCATCATGCCGACCGACAAGAAGGAGGAAACTTTGGGGTTGCTAAAG
ACGTCAAAGAAGAAGGCGGTGGAGTACGGTGCTGCAGCCTCTGCTGCCTC
TCCTAGATCACAGAATTATTCCTCCCCGCGCTCCTCAGAGGGCGAGCTCT
ACACGGCTCTGACTAAAACGACCACCACGAGCCGCATCCGAATTGCCAAT
CTTTGCTGCTCCATGGAGACTAAGCTCGTCACGGAGTTGCTTAAGCCGCT
CAAGGGCGTGTTGGATGTGAAGGTCAGTGAAGTGGGCCGCGTCGCCGTGG
TTCGTCATACCGAGCCCGCCACGGCCACCCTCCTTCTATCCACCCTTAAC
GCCGCGCACCTGGGCGCTACGCTTCAAGAGGTCCACACCAGCCACCACAA
GGATGCCGAGGACCAGGATCAAGAGCATTGCTCGGATTGGGCCGGTCAAA
AACGCCTGCGAGCTTGCCTTGGCACCATGAACCGTGATGCCGGCCCGTGG
GCAGCTCTCTTCGTCGCCAGCGTCGGATGGGTGCTGTCGTTGGTCGGACA
CTACTTCGATTGGTCAAATACCCTACAATGGGCCACGGCCGGGCCCTGCC
TCCTCCTAGCTTTCATGCCCTTGGCCTTGCCTTTATTGCGGGCCGTGCAA
CACAGACGGGTGGATGTAAATGTGCTCATGGGGGTGGCTGTGTTAGGAGC
CGTGTTACTCGGGGATTTACCGGAGGCTCTGGGGGTACTCCTACTGGTAC
TACTAGCGAGTCGGGCGCGATCCGCGGCGCTTGATTATGTGGCACGGTTG
CTGGATTCGACGACCGGCCGACTGGTCCAAGCCCAGGTGGCCCATGTTGT
CTCGTTTGCTGCTACTGCTGCAGCTACAGATGGAGGACAAGGGCAGCCGA
AGGCCGGTAAGGATGTAATGGCAGATGTGCCGTTGACCGCCGTTAAGGTG
GGAGACGTGGTACTCGTCCGTGCCGGGGAGCAAGCCCCTGTGGATGGGGT
AGTAGTGCATGGAGAGGGGGTGATGGACGAGTCTGCCTTAACGGGTGAAT
GCATGCCGGTCGAGAAGAAGAAAGGGAGCCTGGTGGCAGGAGGGAGCATC
TGTCAGACGGGTGCGTTGGAGGTACGATGCACGGCCCCGGCGAGTCAGTC
GAGCTTGCGAGTGATCCAGGATTTGGTGCATGATATCGCCACTACCCATG
CGCCCTCTCAAGAGCTACTCGATCGCTTCGCCTCCTACTATACTCCTATC
GCGCTCGCCCTCTCCTTCTCTATGGCTCTTGCTCCAGAGGTCTGGGCGCT
GCTACGAGGGGAAGGTGTGACCGAGCGAGGATGGCAGGGGGCCCTGTATC
GAGGGCTGGATCTTCTGGTTCTTGCGTGCCCCTGTGCCCTGGCGATGGCC
ACCCCTTTGCCCTTCCTCACCACTCTGGCAGCATCGGCGGCGCGGGCAGG
GGTACTGTTCAAGAGCGCGACGGCCTTAGAGGCGCTGAGCACCGTGCAGG
TGCTGGCCTTGGACAAAACGGGAACTTTGACGGAAGGCCGGTTTCAGGTC
AGTGGAAGAATACCACTGAAGAGGACGGCCAAGCTCGATCCTGAGGTGGT
ACGACTGCTGGCGGCTAGTGTGGAGAGTGTCGTCGCCCATCGTTTGTCTG
CAGCGGTGGTGATGGATGCATTGGGATGTGTGACGGATGCGTTTTATGCC
GCCAAAGCAGGAGGAGGGAAGGGGAGGTACGGTGGTGATGGGAATGGAAG
GAACAACAAGAAGGTGCTAGCCAAGGTATCAAAGTTGCGACATTTGGAAG
GAGTAGGGGTGGAGGGGGTGTGTGTGTTCGAGGAGGCGGCCGAGCCGGAG
GGGGGCTATTTGGTGCGAGTAGGGAATAGCGCCCTGCTGCAAAAGGAGGA
TTTGAACGACCGTGCATTGCAAGCTTTCCTGGCCCGCTACCCGGGCGAGG
CGCATTTGTATGTGGTGGTAGACGGCATTCCAGAATTGGCTCTCAGCCTT
GCGGATCGCCTGCGACCAGAGTCAGGGCCCATGCTAAAGGTCCTCGTAGA
CGAGCTCAAGATCGAAACGACGCTCTTGACAGGAGATTCTTTGGAGGTAG
CCAAGGCCGTGCAAGCTCGCCTCGGGCCCAAACTCCTCCCCACGATCCGG
GCGAGGATGAAACCCGTCGATAAATTTCATTGGATTGAAGCACGGCAGCT
CCAACCGCCCTCTTCTCGAGCGGCCACGTCGGCTTTGCGTCGTTCTTCGG
TCTTTGCTTATTTGGCTGTGCCTTTTTCAGGGAGCAAGGCATCTTCCTAC
CAGGTTACGGACGAGCCGGAGAGCTTGGATGACCTAGAAGCAGCGGCAGG
TCTATCACGCTCCGAGGAAGAGTATTCGCACGAGGGGCTCTTCAGCCGTA
TCTTTTCCCGACGCAACACGTCCTCCTCCATCACCAATCTGTCCGTACAA
GGACAGCAGCCGCAGCTGCTACCGATGAAACAATGCATCGTCGCCATGAT
TGGTGACGGGATCAACGACGCCCCCTCCCTGCGTGCTGCGGACGTGGGAC
TGGCGATGGGGGAGCACGGCACGGCTTTGGCTGTGCAGGCCGCCGACGTG
GTGTTGCTGACGGATGATCTTTCCCGGATCCCCCAGGCCATTCGCATGTC
TCATTTCGTGCGATGGGTGGTGGTGCAGAATTTATTTTTGGCGCTGGGTT
TGAAGGTATTGCTGATGCTGTTGGTGCTCTTGGGACGTGAGGTACAGCTG
TGGGAGGCGGTAGCGAGCGATGGCTTAAGCTTGATGGCCGTAATCATAAA
TGGGCTGCGGCCCTTGTACATGGCGCGAAAGATTTATGTGTAGATTTGTT
TGTGGGTGGGTAGGGACGGATGGAGAGGAAGGGACCATGGTTGGATGGTC
TGGTTTGAAGGGAATGAGATAGGGTAGGGCTGGATTGGGAACTTGTCCGA
TGAGTACGGAGGGAGGAAGGGCGATGGCCTGAGAAGGGTGGACCGGTTGG
ACACGTTAGTGTATATATGAAAAGTGATAACACGTCGGTACAAGTTTTGA
AAGCATAAAAGCGAAAGAAGAAGCGGTAATGAGCTACAGAGCTTTAAGTG
CAGCAGGGACAGTTTCCTTTCTAACTTCCCCAAACAAGATGCGAACTCGA
GCCAAAGGAAGATCCGTTTACCACAGAAATAAG back to topCoding sequence (CDS) from alignment at scaffold_12:790622..793804+ >mRNA_5236 ID=mRNA_5236|Name=jgi.p|Nanoce1779_2|591827|organism=Nannochloropsis oceanica|type=CDS|length=2835bp|location=Sequence derived from alignment at scaffold_12:790622..793804+ (Nannochloropsis oceanica) ATGCCGACCGACAAGAAGGAGGAAACTTTGGGGTTGCTAAAGACGTCAAA GAAGAAGGCGGTGGAGTACGGTGCTGCAGCCTCTGCTGCCTCTCCTAGAT CACAGAATTATTCCTCCCCGCGCTCCTCAGAGGGCGAGCTCTACACGGCT CTGACTAAAACGACCACCACGAGCCGCATCCGAATTGCCAATCTTTGCTG CTCCATGGAGACTAAGCTCGTCACGGAGTTGCTTAAGCCGCTCAAGGGCG TGTTGGATGTGAAGGTCAGTGAAGTGGGCCGCGTCGCCGTGGTTCGTCAT ACCGAGCCCGCCACGGCCACCCTCCTTCTATCCACCCTTAACGCCGCGCA CCTGGGCGCTACGCTTCAAGAGGTCCACACCAGCCACCACAAGGATGCCG AGGACCAGGATCAAGAGCATTGCTCGGATTGGGCCGGTCAAAAACGCCTG CGAGCTTGCCTTGGCACCATGAACCGTGATGCCGGCCCGTGGGCAGCTCT CTTCGTCGCCAGCGTCGGATGGGTGCTGTCGTTGGTCGGACACTACTTCG ATTGGTCAAATACCCTACAATGGGCCACGGCCGGGCCCTGCCTCCTCCTA GCTTTCATGCCCTTGGCCTTGCCTTTATTGCGGGCCGTGCAACACAGACG GGTGGATGTAAATGTGCTCATGGGGGTGGCTGTGTTAGGAGCCGTGTTAC TCGGGGATTTACCGGAGGCTCTGGGGGTACTCCTACTGGTACTACTAGCG AGTCGGGCGCGATCCGCGGCGCTTGATTATGTGGCACGGTTGCTGGATTC GACGACCGGCCGACTGGTCCAAGCCCAGGTGGCCCATGTTGTCTCGTTTG CTGCTACTGCTGCAGCTACAGATGGAGGACAAGGGCAGCCGAAGGCCGGT AAGGATGTAATGGCAGATGTGCCGTTGACCGCCGTTAAGGTGGGAGACGT GGTACTCGTCCGTGCCGGGGAGCAAGCCCCTGTGGATGGGGTAGTAGTGC ATGGAGAGGGGGTGATGGACGAGTCTGCCTTAACGGGTGAATGCATGCCG GTCGAGAAGAAGAAAGGGAGCCTGGTGGCAGGAGGGAGCATCTGTCAGAC GGGTGCGTTGGAGGTACGATGCACGGCCCCGGCGAGTCAGTCGAGCTTGC GAGTGATCCAGGATTTGGTGCATGATATCGCCACTACCCATGCGCCCTCT CAAGAGCTACTCGATCGCTTCGCCTCCTACTATACTCCTATCGCGCTCGC CCTCTCCTTCTCTATGGCTCTTGCTCCAGAGGTCTGGGCGCTGCTACGAG GGGAAGGTGTGACCGAGCGAGGATGGCAGGGGGCCCTGTATCGAGGGCTG GATCTTCTGGTTCTTGCGTGCCCCTGTGCCCTGGCGATGGCCACCCCTTT GCCCTTCCTCACCACTCTGGCAGCATCGGCGGCGCGGGCAGGGGTACTGT TCAAGAGCGCGACGGCCTTAGAGGCGCTGAGCACCGTGCAGGTGCTGGCC TTGGACAAAACGGGAACTTTGACGGAAGGCCGGTTTCAGGTCAGTGGAAG AATACCACTGAAGAGGACGGCCAAGCTCGATCCTGAGGTGGTACGACTGC TGGCGGCTAGTGTGGAGAGTGTCGTCGCCCATCGTTTGTCTGCAGCGGTG GTGATGGATGCATTGGGATGTGTGACGGATGCGTTTTATGCCGCCAAAGC AGGAGGAGGGAAGGGGAGGTACGGTGGTGATGGGAATGGAAGGAACAACA AGAAGGTGCTAGCCAAGGTATCAAAGTTGCGACATTTGGAAGGAGTAGGG GTGGAGGGGGTGTGTGTGTTCGAGGAGGCGGCCGAGCCGGAGGGGGGCTA TTTGGTGCGAGTAGGGAATAGCGCCCTGCTGCAAAAGGAGGATTTGAACG ACCGTGCATTGCAAGCTTTCCTGGCCCGCTACCCGGGCGAGGCGCATTTG TATGTGGTGGTAGACGGCATTCCAGAATTGGCTCTCAGCCTTGCGGATCG CCTGCGACCAGAGTCAGGGCCCATGCTAAAGGTCCTCGTAGACGAGCTCA AGATCGAAACGACGCTCTTGACAGGAGATTCTTTGGAGGTAGCCAAGGCC GTGCAAGCTCGCCTCGGGCCCAAACTCCTCCCCACGATCCGGGCGAGGAT GAAACCCGTCGATAAATTTCATTGGATTGAAGCACGGCAGCTCCAACCGC CCTCTTCTCGAGCGGCCACGTCGGCTTTGCGTCGTTCTTCGGTCTTTGCT TATTTGGCTGTGCCTTTTTCAGGGAGCAAGGCATCTTCCTACCAGGTTAC GGACGAGCCGGAGAGCTTGGATGACCTAGAAGCAGCGGCAGGTCTATCAC GCTCCGAGGAAGAGTATTCGCACGAGGGGCTCTTCAGCCGTATCTTTTCC CGACGCAACACGTCCTCCTCCATCACCAATCTGTCCGTACAAGGACAGCA GCCGCAGCTGCTACCGATGAAACAATGCATCGTCGCCATGATTGGTGACG GGATCAACGACGCCCCCTCCCTGCGTGCTGCGGACGTGGGACTGGCGATG GGGGAGCACGGCACGGCTTTGGCTGTGCAGGCCGCCGACGTGGTGTTGCT GACGGATGATCTTTCCCGGATCCCCCAGGCCATTCGCATGTCTCATTTCG TGCGATGGGTGGTGGTGCAGAATTTATTTTTGGCGCTGGGTTTGAAGGTA TTGCTGATGCTGTTGGTGCTCTTGGGACGTGAGGTACAGCTGTGGGAGGC GGTAGCGAGCGATGGCTTAAGCTTGATGGCCGTAATCATAAATGGGCTGC GGCCCTTGTACATGGCGCGAAAGATTTATGTGTAG back to top
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