jgi.p|Nanoce1779_2|591827, gene_5236 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591827
Unique Namegene_5236
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_12:790622..793804 +

Link to JBrowse

Properties
Property NameValue
TranscriptId591913
ProteinId591827
Product nameE1-E2 ATPase-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:790622..793804 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0030001metal ion transport
GO:0006810transport
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0005524ATP binding
GO:0015662ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL010ncniL010Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03230NO11G03230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591827mRNA_5236-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591827mRNA_5236Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|591827

>mRNA_5236-protein ID=mRNA_5236-protein|Name=jgi.p|Nanoce1779_2|591827|organism=Nannochloropsis oceanica|type=polypeptide|length=945bp
MPTDKKEETLGLLKTSKKKAVEYGAAASAASPRSQNYSSPRSSEGELYTA
LTKTTTTSRIRIANLCCSMETKLVTELLKPLKGVLDVKVSEVGRVAVVRH
TEPATATLLLSTLNAAHLGATLQEVHTSHHKDAEDQDQEHCSDWAGQKRL
RACLGTMNRDAGPWAALFVASVGWVLSLVGHYFDWSNTLQWATAGPCLLL
AFMPLALPLLRAVQHRRVDVNVLMGVAVLGAVLLGDLPEALGVLLLVLLA
SRARSAALDYVARLLDSTTGRLVQAQVAHVVSFAATAAATDGGQGQPKAG
KDVMADVPLTAVKVGDVVLVRAGEQAPVDGVVVHGEGVMDESALTGECMP
VEKKKGSLVAGGSICQTGALEVRCTAPASQSSLRVIQDLVHDIATTHAPS
QELLDRFASYYTPIALALSFSMALAPEVWALLRGEGVTERGWQGALYRGL
DLLVLACPCALAMATPLPFLTTLAASAARAGVLFKSATALEALSTVQVLA
LDKTGTLTEGRFQVSGRIPLKRTAKLDPEVVRLLAASVESVVAHRLSAAV
VMDALGCVTDAFYAAKAGGGKGRYGGDGNGRNNKKVLAKVSKLRHLEGVG
VEGVCVFEEAAEPEGGYLVRVGNSALLQKEDLNDRALQAFLARYPGEAHL
YVVVDGIPELALSLADRLRPESGPMLKVLVDELKIETTLLTGDSLEVAKA
VQARLGPKLLPTIRARMKPVDKFHWIEARQLQPPSSRAATSALRRSSVFA
YLAVPFSGSKASSYQVTDEPESLDDLEAAAGLSRSEEEYSHEGLFSRIFS
RRNTSSSITNLSVQGQQPQLLPMKQCIVAMIGDGINDAPSLRAADVGLAM
GEHGTALAVQAADVVLLTDDLSRIPQAIRMSHFVRWVVVQNLFLALGLKV
LLMLLVLLGREVQLWEAVASDGLSLMAVIINGLRPLYMARKIYV*
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Synonyms
Publications