jgi.p|Nanoce1779_2|630874, mRNA_5197 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|630874
Unique Name	mRNA_5197
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	5326
Alignment location	scaffold_12:714373..719698 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	630960
Track	FilteredModels2
ProteinId	630874

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:714373..719698 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630874	gene_5197	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630874	mRNA_5197-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5197	CDS_5197	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:714373..719698+
coding sequence from alignment at scaffold_12:714373..719698+

mRNA sequence

>mRNA_5197 ID=mRNA_5197|Name=jgi.p|Nanoce1779_2|630874|organism=Nannochloropsis oceanica|type=mRNA|length=5326bp
ATGGACTTTTTGGGCACTCTACTTTGCCAAATTTCCTGCGAAAAACTTCC
CACAGACTACGACCGGGCGGCCAAAGTGGAGGAGCAAGAGTATGTACCTG
GTGTTGTGCGCTCGGCTTCAACGTTGCCTCTTCTGAAGTACCAGGATGAC
AATGATGCCGATGCCGTAAATGTTAAATTTAATGATATCCCTTACAAGAA
TGAGGACCACCTCGGGCGCAAGCAAGCGACCATGCTGGCGTTGTACGGCC
TCTTGATGAAGCGGTACATGCGAGAGCCCGAGATCGAGCTGGCCATGATC
ATCGAGCGAGGTGCCTGGGTGGGTGTACCCTTACATGGGGTCGCTGGGCT
AGAAATCTCAATCATCGAGGCAGCTAAAAAAATTCATACCCTCCTGCAAG
ACCATGCGCCCCTGAATTCCTTTGTCTCCATCGACGGTGATGACTTGAGC
ACCCGAGCCTTTGTGGTACGAGACAACATGCTTATTTCCCCGCCCAGAGA
ATGGCCACAATTATCGTTTGTGACGCCTCTTCTCTCTTGTGTAGCGGACA
TCTGCATGATCCTTGAGGAAGATCATTTCTTTACCCTTCTCTACAACAAA
CGTCTCTTCTCGAGCAACATGATGGAGGCCATGATGCGCTGCTGGGAGAC
GCTGCTTACCCACGCTTGTCAAGACATGTCCGTGCGACAAGATCTGGTGC
CTGTCGTAAGCCCTATGGATACAAAACGAATGGTGAGCGAGTGGAATCAG
ACAGAGATGCTGTTCCTACCACTCCGGCAAGGCATTCATGAGCTCTTTGA
GGCGCGCGTTGACGAAGCCCCGAGCCGCCTGGCAGTGGTAGGCCCCGTTT
CTGAAGAGGAGAGCGATATAGACCATTATCCCGCACGCGTGCAAGAAGTC
ACATATGGGGAGCTCGAACAACAAGCCAACCGTTTTGCCCATCATCTGCG
ACGGCAGGGCCTTCAAAACGAAGACATTGTGAGCATCTTCCTGGAGAGGT
CCGTGGCCTTCTACGTGGTGATGCTCGGCGTGTTAAAAGCTGGTGCTGCC
TACGTCTCGATTGACACCGACTATCCCGACGACCGCATTCAATTTATGCT
AGAGGATTCAGGAGCCGTGGCGCTGGTGACAATGCAAGCTCTTGCTCCCC
GTGTCCAAGCCAAGGAGGAGATGTCACATCGACCCTTCCGTTTGGTCATA
TTGGATGACCCCTTACATTCGGCAGCTTTGGCTCAAGAACCTCCGACACG
TCTTCTCCGTACAGTGATATCTCATGCCGTGGAAGCGCCGTGCTATGTCA
TCTACACCTCGGGCTCGACGGGCAGACCCAAGGGCGTGCAGATTAGCCAT
GCTAACGCACTCAACCTCATACAGGCTGAAGCGTACATTTACGGAATTCG
ACCCTCAGATCGGGTCCTGCAAGGTTTCTCTCCATCCTTTGACGCCTCGG
TGGAGGAGATGTGGATGGCTCTGCATAATGGTGCGGCACTGGTGGTGGGT
ACTAAGGAGCTGATGCGCTCGGGTCCCGATTTTCCTCGTTACTTGGCAGT
GTTAGGTGTGACTTGTCTTTCAACTGTTCCGACACTTCTCGCTACCTTGG
GAGCTCTGGAATGTTGCCAAAATGGTGACAATTGGGACACACAGCTGCTC
CCCAATGTTCGGATCATTATCACGGGCGGGGAAGCATGCTCTAAGGAGCT
TATGGCGCGCTGGACAACTTGCGGGCGCCGCTTCTTTAACACATACGGTC
CTACCGAGGCCACCGTTGTTGCCACCTACAAGGAATATGGAACTACTGCT
TCTTTTGAATCCTCTGTGCACCGCATCACCATCGGCAGACCTTTGCCCAA
CTACCAGATCTACGTGTTGGATGCGCATTTGAACCTGCTGCCTCCTGGGG
CGCTTGGGGAGCTAGTCATTGGCGGTGTTTCCGTCTCCCGTACGGGGTAC
CTAAACCTGGTGGACAAGACTCAGGATGTATTTAAGCCTGATCCTTTCCG
ATCCGGCAAATCTTGCCGCTACCCGTTGTATCAGAGTGGCGATTTGGCGC
GGATCTCGCTAGCCCCAGATAGCATGGGCGAAATTGAATACTACGGGCGG
ACGGATGCTCAAGTCAAGATCCGCGGATACCGTGTAGAGCCTAGTGAGAT
TGAGGCTGTGCTATGTGGGCTGCCAGGGATTCAATGTGCAGTGATAGACG
TGCAACAGCAAGGTCCTGGGACGATGAAGCAGCTTGTAGCATTTGTAGTG
CCTGCGGCTGGAGATGAGGGTACCTTGTTCCTGAACACAGCTGCGGTGAT
GCAAGCCATGCGTGAGAAACTGCCAGCATTCATGATTCCGTCGCACATCG
AGCCGGTGACTGCCTTTCCTATCTTGCCCTCTGGTAAGCTTGACCGACGC
CGCTTCCCTCAAGTCTTACGTCCCGCCTCTCGCCGAGCGTTTGGTAAAAG
CTTGACGAGGTCATTGTCGCGTGTCTTGGGGGCTAGTTGTGACGTTTCTG
TGGCGAGGACCGGTGGTGACGTACTAGAGGAAGAGCATGATAAGCATCGG
CGCGCGGTAACGTCAGCGTTTGAGCACGTGCTAGGTCTACCAGCCAAAAC
ACTGGCAAGCCCAAAGGCAACTGACGCGGACTTCTTCGACCTCGGTGGCA
ACTCGCTACTAGTCTCCATGCTGGTCACCAAGCTCCGACATAAATATCCC
GCCGTTGCAGCCCGAGATATCTACAACCATAGCGCAGTAGGATCACTTTC
GGATGTCCTCAGGTCTTTGAGTCCCAAAACAGCCTCAGCAGCGACATCGA
CGACGGCACCACAATTTGTGACACTCAATAGCGAGGAAGAGAGACCCTAC
GCTACTAAGCTCACTGACGGTTGCAGTCAAGTGTCGTCTGCTTCATCTCC
ACCTTATGTTCCATGCATGGCCACCACCATTCTTGCCGATCTGGTCCAAC
TGGCTGCCATGTACATCGTTGCGGCCTATATGGGACTTAATGGCCTAGGT
GTATATCTCCTGTACTTCAACTACAAGGACTTACCCACGCTCAAGTTGCT
GGCGATGCTCACGGGCGTCTCCGTTGCCCTCATCCCGCTGGCGTTTGTGG
TGTTGGTGGCGACTAAGTGGCTCATGCTCGGGCGCGTTCAGGAGGGCGAC
CATCCTCTATGGCAATCATACCACCTGCGCTTTTGGTTCGTGCAGTCCTT
GGACAGTGTATTTCGGCTCTTTTATATGGCGTCACTAAAGGGCACGCCTG
TGGTGGCATGGTATCACTGGGCCTTAGGCTCTCGCATGGGTCGAGGCATC
TATCTACAGGGCAGTCTGGAGGGATACGATCTGGTTACAATTGGGGACGG
CTGCACACTCAACTGTCAAGCCAATGTGAGCGCCGTAAGCATAGAAGGGA
ACTACCTGAAGCTGCGCAAGGTAATTCTGGGTCGAGGCGTGACAGTGGGC
GTCCGTGCCATGGTCCAGTCGGAAGTTTGCATGGACGACTACTGCAAGAT
CGAAGCCTTGTCTCTCGTGCCTTCGGCGACCCGCGTGCCGACTCGTCAGA
TTTGGGCAGGGGCGCCAATCGTTTTTGTGGGCTTTAATGAAGACATCGGC
TCAGCACCAACGGGCACCAGTGGTATCATTGGAATACTACAAATTCTGTG
GGGCGTGTTTGAAAAGGTCCTGGAAGCCAGCTTTCTGATGCCCTTCCTCT
ACATGCTTCGTGCGGTGCCGGTGCCATCCGTAACAGAGGATGATCCTGTG
GCTACCCGCTGGCACGCGGCAGGTACGACACTGCTTCATGTCACTTGGCT
CTCGATGGTATTACAGATCGGCATTTTTTTCGCCAGGACATGTCTTGTGG
CAGTACTCAAGCGCCTCCTCCTGCTCGGCGGTCTGCAGGAGGAGACCACC
TACCCCCTGAGTTCGTGGACATTCTTTCGACATTGGGCAGTAGATAATCT
GATGGATTCCCTGGCCGTGTACACCAAACAGCTTCGGGGAACTCTATATT
TACCGCTGTGGTACCAGCTGATGGGCGCACATATTGGGCACTATGCAGAA
ATTTCGGCATTTGAAAACGTTTGTGCTGAGCGTCTAACACTTGGGGACCA
AGTTTTTGTGGCAGACGACGTGATGCTGGGTATGCCGCATGTAGATAGTG
GGATAGTGACGCAACAACCAGTATCAATCGGAGATCGGACCTTTGTGGGC
AACAATTCAGTCGTGGAAGGCGGCACGCATTTACCCCAAGATGTGCTTGT
CGGAGTCCTGACACTGCCACCCTCACAGAGGGCAACAACTGCCCCTGGGG
AGACTTTGCTTGGCTGCCCACCCTTTCGGGTACAAAAGCGGGCTGAACTT
TCGTATCATGCTATTAACACGTATACCCCACCAAGTTGGATGGTATTTGT
ACGCTATGTAGTGGAAGGCGTGGGGTTCCTCCTATTACAGATCTCGTTGG
CGTCATGCTTTGCTCTGCTGTACGTGTCCATGACTTGGTGCTACAACGGG
AACAACAGCAGTGCCAGCCTCGTGACATACTTGCTGACGCTGCCTTTGCT
TGTTATTGGGGAAGGCATAGTGGCGGCCTTCCTTACCCTGTTTTGGAAGT
GGGTTGTCATAGGCCGGTACCGTGCGGGGTCGTACCCACTGTACGGAATA
TATGTGTGGCGAACTGAATTTGTAGAGCGTATAGAAGAGAACCTACTGCA
CACCCACACTTATCCATTAATTAGCGGAACAGTATGGATGCAACTTGTGA
ATCAGGCCATGGGCGTGCGGATGGGGTGTCGAGCCTATCTAGAATTTCCT
TACTTTTGCGAACCTGACCTTTGCACCGTGGGTGATTATTGCAACATGGA
ACGCACGGCTTCCTTACAAGCGCATTTGTTTCAGGATCGCGTGCGAACAA
CGGGTCCCGTCAAAGTGGGCAACTTTTGCAGCTTGGGTTCGGACTCGGTG
GTCCTGTTGGGTGCAGTACTGGGGGACCACTGTGCCTTGAGCTCCATGTC
GTTAGTCCTGCGGTCCGAGGAGTTGCCTTCACATACGCAATGGCACGGCT
TGCCCGCCGTCAAATTGCTGCCAGGGGTTCGGGACGCGCGGAAATACAAT
GATGAGGAAGTGCAGGAGGCCGGAGCAGTTGCGGTGGAAGCGGCGGGTAG
AGTAAGAGAGGGCAAGTAAGAACTAATAAGGGAGAGGCGGGGAGGTGTCG
GTCGTGACGAATAAACGTAAAATATGTGTAAAGTTGTGGCGAAGATAGAG
ATTGATAAGTAAGAATAAAGCGGGAAGGACACGCGAGCCAAACATTGGAA
ACTAGGCAAATAAGTGCAGTCATGGT

protein sequence of jgi.p|Nanoce1779_2|630874

>mRNA_5197-protein ID=mRNA_5197-protein|Name=jgi.p|Nanoce1779_2|630874|organism=Nannochloropsis oceanica|type=polypeptide|length=1723bp
MDFLGTLLCQISCEKLPTDYDRAAKVEEQEYVPGVVRSASTLPLLKYQDD
NDADAVNVKFNDIPYKNEDHLGRKQATMLALYGLLMKRYMREPEIELAMI
IERGAWVGVPLHGVAGLEISIIEAAKKIHTLLQDHAPLNSFVSIDGDDLS
TRAFVVRDNMLISPPREWPQLSFVTPLLSCVADICMILEEDHFFTLLYNK
RLFSSNMMEAMMRCWETLLTHACQDMSVRQDLVPVVSPMDTKRMVSEWNQ
TEMLFLPLRQGIHELFEARVDEAPSRLAVVGPVSEEESDIDHYPARVQEV
TYGELEQQANRFAHHLRRQGLQNEDIVSIFLERSVAFYVVMLGVLKAGAA
YVSIDTDYPDDRIQFMLEDSGAVALVTMQALAPRVQAKEEMSHRPFRLVI
LDDPLHSAALAQEPPTRLLRTVISHAVEAPCYVIYTSGSTGRPKGVQISH
ANALNLIQAEAYIYGIRPSDRVLQGFSPSFDASVEEMWMALHNGAALVVG
TKELMRSGPDFPRYLAVLGVTCLSTVPTLLATLGALECCQNGDNWDTQLL
PNVRIIITGGEACSKELMARWTTCGRRFFNTYGPTEATVVATYKEYGTTA
SFESSVHRITIGRPLPNYQIYVLDAHLNLLPPGALGELVIGGVSVSRTGY
LNLVDKTQDVFKPDPFRSGKSCRYPLYQSGDLARISLAPDSMGEIEYYGR
TDAQVKIRGYRVEPSEIEAVLCGLPGIQCAVIDVQQQGPGTMKQLVAFVV
PAAGDEGTLFLNTAAVMQAMREKLPAFMIPSHIEPVTAFPILPSGKLDRR
RFPQVLRPASRRAFGKSLTRSLSRVLGASCDVSVARTGGDVLEEEHDKHR
RAVTSAFEHVLGLPAKTLASPKATDADFFDLGGNSLLVSMLVTKLRHKYP
AVAARDIYNHSAVGSLSDVLRSLSPKTASAATSTTAPQFVTLNSEEERPY
ATKLTDGCSQVSSASSPPYVPCMATTILADLVQLAAMYIVAAYMGLNGLG
VYLLYFNYKDLPTLKLLAMLTGVSVALIPLAFVVLVATKWLMLGRVQEGD
HPLWQSYHLRFWFVQSLDSVFRLFYMASLKGTPVVAWYHWALGSRMGRGI
YLQGSLEGYDLVTIGDGCTLNCQANVSAVSIEGNYLKLRKVILGRGVTVG
VRAMVQSEVCMDDYCKIEALSLVPSATRVPTRQIWAGAPIVFVGFNEDIG
SAPTGTSGIIGILQILWGVFEKVLEASFLMPFLYMLRAVPVPSVTEDDPV
ATRWHAAGTTLLHVTWLSMVLQIGIFFARTCLVAVLKRLLLLGGLQEETT
YPLSSWTFFRHWAVDNLMDSLAVYTKQLRGTLYLPLWYQLMGAHIGHYAE
ISAFENVCAERLTLGDQVFVADDVMLGMPHVDSGIVTQQPVSIGDRTFVG
NNSVVEGGTHLPQDVLVGVLTLPPSQRATTAPGETLLGCPPFRVQKRAEL
SYHAINTYTPPSWMVFVRYVVEGVGFLLLQISLASCFALLYVSMTWCYNG
NNSSASLVTYLLTLPLLVIGEGIVAAFLTLFWKWVVIGRYRAGSYPLYGI
YVWRTEFVERIEENLLHTHTYPLISGTVWMQLVNQAMGVRMGCRAYLEFP
YFCEPDLCTVGDYCNMERTASLQAHLFQDRVRTTGPVKVGNFCSLGSDSV
VLLGAVLGDHCALSSMSLVLRSEELPSHTQWHGLPAVKLLPGVRDARKYN
DEEVQEAGAVAVEAAGRVREGK*

mRNA from alignment at scaffold_12:714373..719698+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5197 ID=mRNA_5197|Name=jgi.p|Nanoce1779_2|630874|organism=Nannochloropsis oceanica|type=mRNA|length=5326bp|location=Sequence derived from alignment at scaffold_12:714373..719698+ (Nannochloropsis oceanica)
ATGGACTTTTTGGGCACTCTACTTTGCCAAATTTCCTGCGAAAAACTTCC
CACAGACTACGACCGGGCGGCCAAAGTGGAGGAGCAAGAGTATGTACCTG
GTGTTGTGCGCTCGGCTTCAACGTTGCCTCTTCTGAAGTACCAGGATGAC
AATGATGCCGATGCCGTAAATGTTAAATTTAATGATATCCCTTACAAGAA
TGAGGACCACCTCGGGCGCAAGCAAGCGACCATGCTGGCGTTGTACGGCC
TCTTGATGAAGCGGTACATGCGAGAGCCCGAGATCGAGCTGGCCATGATC
ATCGAGCGAGGTGCCTGGGTGGGTGTACCCTTACATGGGGTCGCTGGGCT
AGAAATCTCAATCATCGAGGCAGCTAAAAAAATTCATACCCTCCTGCAAG
ACCATGCGCCCCTGAATTCCTTTGTCTCCATCGACGGTGATGACTTGAGC
ACCCGAGCCTTTGTGGTACGAGACAACATGCTTATTTCCCCGCCCAGAGA
ATGGCCACAATTATCGTTTGTGACGCCTCTTCTCTCTTGTGTAGCGGACA
TCTGCATGATCCTTGAGGAAGATCATTTCTTTACCCTTCTCTACAACAAA
CGTCTCTTCTCGAGCAACATGATGGAGGCCATGATGCGCTGCTGGGAGAC
GCTGCTTACCCACGCTTGTCAAGACATGTCCGTGCGACAAGATCTGGTGC
CTGTCGTAAGCCCTATGGATACAAAACGAATGGTGAGCGAGTGGAATCAG
ACAGAGATGCTGTTCCTACCACTCCGGCAAGGCATTCATGAGCTCTTTGA
GGCGCGCGTTGACGAAGCCCCGAGCCGCCTGGCAGTGGTAGGCCCCGTTT
CTGAAGAGGAGAGCGATATAGACCATTATCCCGCACGCGTGCAAGAAGTC
ACATATGGGGAGCTCGAACAACAAGCCAACCGTTTTGCCCATCATCTGCG
ACGGCAGGGCCTTCAAAACGAAGACATTGTGAGCATCTTCCTGGAGAGGT
CCGTGGCCTTCTACGTGGTGATGCTCGGCGTGTTAAAAGCTGGTGCTGCC
TACGTCTCGATTGACACCGACTATCCCGACGACCGCATTCAATTTATGCT
AGAGGATTCAGGAGCCGTGGCGCTGGTGACAATGCAAGCTCTTGCTCCCC
GTGTCCAAGCCAAGGAGGAGATGTCACATCGACCCTTCCGTTTGGTCATA
TTGGATGACCCCTTACATTCGGCAGCTTTGGCTCAAGAACCTCCGACACG
TCTTCTCCGTACAGTGATATCTCATGCCGTGGAAGCGCCGTGCTATGTCA
TCTACACCTCGGGCTCGACGGGCAGACCCAAGGGCGTGCAGATTAGCCAT
GCTAACGCACTCAACCTCATACAGGCTGAAGCGTACATTTACGGAATTCG
ACCCTCAGATCGGGTCCTGCAAGGTTTCTCTCCATCCTTTGACGCCTCGG
TGGAGGAGATGTGGATGGCTCTGCATAATGGTGCGGCACTGGTGGTGGGT
ACTAAGGAGCTGATGCGCTCGGGTCCCGATTTTCCTCGTTACTTGGCAGT
GTTAGGTGTGACTTGTCTTTCAACTGTTCCGACACTTCTCGCTACCTTGG
GAGCTCTGGAATGTTGCCAAAATGGTGACAATTGGGACACACAGCTGCTC
CCCAATGTTCGGATCATTATCACGGGCGGGGAAGCATGCTCTAAGGAGCT
TATGGCGCGCTGGACAACTTGCGGGCGCCGCTTCTTTAACACATACGGTC
CTACCGAGGCCACCGTTGTTGCCACCTACAAGGAATATGGAACTACTGCT
TCTTTTGAATCCTCTGTGCACCGCATCACCATCGGCAGACCTTTGCCCAA
CTACCAGATCTACGTGTTGGATGCGCATTTGAACCTGCTGCCTCCTGGGG
CGCTTGGGGAGCTAGTCATTGGCGGTGTTTCCGTCTCCCGTACGGGGTAC
CTAAACCTGGTGGACAAGACTCAGGATGTATTTAAGCCTGATCCTTTCCG
ATCCGGCAAATCTTGCCGCTACCCGTTGTATCAGAGTGGCGATTTGGCGC
GGATCTCGCTAGCCCCAGATAGCATGGGCGAAATTGAATACTACGGGCGG
ACGGATGCTCAAGTCAAGATCCGCGGATACCGTGTAGAGCCTAGTGAGAT
TGAGGCTGTGCTATGTGGGCTGCCAGGGATTCAATGTGCAGTGATAGACG
TGCAACAGCAAGGTCCTGGGACGATGAAGCAGCTTGTAGCATTTGTAGTG
CCTGCGGCTGGAGATGAGGGTACCTTGTTCCTGAACACAGCTGCGGTGAT
GCAAGCCATGCGTGAGAAACTGCCAGCATTCATGATTCCGTCGCACATCG
AGCCGGTGACTGCCTTTCCTATCTTGCCCTCTGGTAAGCTTGACCGACGC
CGCTTCCCTCAAGTCTTACGTCCCGCCTCTCGCCGAGCGTTTGGTAAAAG
CTTGACGAGGTCATTGTCGCGTGTCTTGGGGGCTAGTTGTGACGTTTCTG
TGGCGAGGACCGGTGGTGACGTACTAGAGGAAGAGCATGATAAGCATCGG
CGCGCGGTAACGTCAGCGTTTGAGCACGTGCTAGGTCTACCAGCCAAAAC
ACTGGCAAGCCCAAAGGCAACTGACGCGGACTTCTTCGACCTCGGTGGCA
ACTCGCTACTAGTCTCCATGCTGGTCACCAAGCTCCGACATAAATATCCC
GCCGTTGCAGCCCGAGATATCTACAACCATAGCGCAGTAGGATCACTTTC
GGATGTCCTCAGGTCTTTGAGTCCCAAAACAGCCTCAGCAGCGACATCGA
CGACGGCACCACAATTTGTGACACTCAATAGCGAGGAAGAGAGACCCTAC
GCTACTAAGCTCACTGACGGTTGCAGTCAAGTGTCGTCTGCTTCATCTCC
ACCTTATGTTCCATGCATGGCCACCACCATTCTTGCCGATCTGGTCCAAC
TGGCTGCCATGTACATCGTTGCGGCCTATATGGGACTTAATGGCCTAGGT
GTATATCTCCTGTACTTCAACTACAAGGACTTACCCACGCTCAAGTTGCT
GGCGATGCTCACGGGCGTCTCCGTTGCCCTCATCCCGCTGGCGTTTGTGG
TGTTGGTGGCGACTAAGTGGCTCATGCTCGGGCGCGTTCAGGAGGGCGAC
CATCCTCTATGGCAATCATACCACCTGCGCTTTTGGTTCGTGCAGTCCTT
GGACAGTGTATTTCGGCTCTTTTATATGGCGTCACTAAAGGGCACGCCTG
TGGTGGCATGGTATCACTGGGCCTTAGGCTCTCGCATGGGTCGAGGCATC
TATCTACAGGGCAGTCTGGAGGGATACGATCTGGTTACAATTGGGGACGG
CTGCACACTCAACTGTCAAGCCAATGTGAGCGCCGTAAGCATAGAAGGGA
ACTACCTGAAGCTGCGCAAGGTAATTCTGGGTCGAGGCGTGACAGTGGGC
GTCCGTGCCATGGTCCAGTCGGAAGTTTGCATGGACGACTACTGCAAGAT
CGAAGCCTTGTCTCTCGTGCCTTCGGCGACCCGCGTGCCGACTCGTCAGA
TTTGGGCAGGGGCGCCAATCGTTTTTGTGGGCTTTAATGAAGACATCGGC
TCAGCACCAACGGGCACCAGTGGTATCATTGGAATACTACAAATTCTGTG
GGGCGTGTTTGAAAAGGTCCTGGAAGCCAGCTTTCTGATGCCCTTCCTCT
ACATGCTTCGTGCGGTGCCGGTGCCATCCGTAACAGAGGATGATCCTGTG
GCTACCCGCTGGCACGCGGCAGGTACGACACTGCTTCATGTCACTTGGCT
CTCGATGGTATTACAGATCGGCATTTTTTTCGCCAGGACATGTCTTGTGG
CAGTACTCAAGCGCCTCCTCCTGCTCGGCGGTCTGCAGGAGGAGACCACC
TACCCCCTGAGTTCGTGGACATTCTTTCGACATTGGGCAGTAGATAATCT
GATGGATTCCCTGGCCGTGTACACCAAACAGCTTCGGGGAACTCTATATT
TACCGCTGTGGTACCAGCTGATGGGCGCACATATTGGGCACTATGCAGAA
ATTTCGGCATTTGAAAACGTTTGTGCTGAGCGTCTAACACTTGGGGACCA
AGTTTTTGTGGCAGACGACGTGATGCTGGGTATGCCGCATGTAGATAGTG
GGATAGTGACGCAACAACCAGTATCAATCGGAGATCGGACCTTTGTGGGC
AACAATTCAGTCGTGGAAGGCGGCACGCATTTACCCCAAGATGTGCTTGT
CGGAGTCCTGACACTGCCACCCTCACAGAGGGCAACAACTGCCCCTGGGG
AGACTTTGCTTGGCTGCCCACCCTTTCGGGTACAAAAGCGGGCTGAACTT
TCGTATCATGCTATTAACACGTATACCCCACCAAGTTGGATGGTATTTGT
ACGCTATGTAGTGGAAGGCGTGGGGTTCCTCCTATTACAGATCTCGTTGG
CGTCATGCTTTGCTCTGCTGTACGTGTCCATGACTTGGTGCTACAACGGG
AACAACAGCAGTGCCAGCCTCGTGACATACTTGCTGACGCTGCCTTTGCT
TGTTATTGGGGAAGGCATAGTGGCGGCCTTCCTTACCCTGTTTTGGAAGT
GGGTTGTCATAGGCCGGTACCGTGCGGGGTCGTACCCACTGTACGGAATA
TATGTGTGGCGAACTGAATTTGTAGAGCGTATAGAAGAGAACCTACTGCA
CACCCACACTTATCCATTAATTAGCGGAACAGTATGGATGCAACTTGTGA
ATCAGGCCATGGGCGTGCGGATGGGGTGTCGAGCCTATCTAGAATTTCCT
TACTTTTGCGAACCTGACCTTTGCACCGTGGGTGATTATTGCAACATGGA
ACGCACGGCTTCCTTACAAGCGCATTTGTTTCAGGATCGCGTGCGAACAA
CGGGTCCCGTCAAAGTGGGCAACTTTTGCAGCTTGGGTTCGGACTCGGTG
GTCCTGTTGGGTGCAGTACTGGGGGACCACTGTGCCTTGAGCTCCATGTC
GTTAGTCCTGCGGTCCGAGGAGTTGCCTTCACATACGCAATGGCACGGCT
TGCCCGCCGTCAAATTGCTGCCAGGGGTTCGGGACGCGCGGAAATACAAT
GATGAGGAAGTGCAGGAGGCCGGAGCAGTTGCGGTGGAAGCGGCGGGTAG
AGTAAGAGAGGGCAAGTAAGAACTAATAAGGGAGAGGCGGGGAGGTGTCG
GTCGTGACGAATAAACGTAAAATATGTGTAAAGTTGTGGCGAAGATAGAG
ATTGATAAGTAAGAATAAAGCGGGAAGGACACGCGAGCCAAACATTGGAA
ACTAGGCAAATAAGTGCAGTCATGGT

Coding sequence (CDS) from alignment at scaffold_12:714373..719698+

>mRNA_5197 ID=mRNA_5197|Name=jgi.p|Nanoce1779_2|630874|organism=Nannochloropsis oceanica|type=CDS|length=5169bp|location=Sequence derived from alignment at scaffold_12:714373..719698+ (Nannochloropsis oceanica)
ATGGACTTTTTGGGCACTCTACTTTGCCAAATTTCCTGCGAAAAACTTCC
CACAGACTACGACCGGGCGGCCAAAGTGGAGGAGCAAGAGTATGTACCTG
GTGTTGTGCGCTCGGCTTCAACGTTGCCTCTTCTGAAGTACCAGGATGAC
AATGATGCCGATGCCGTAAATGTTAAATTTAATGATATCCCTTACAAGAA
TGAGGACCACCTCGGGCGCAAGCAAGCGACCATGCTGGCGTTGTACGGCC
TCTTGATGAAGCGGTACATGCGAGAGCCCGAGATCGAGCTGGCCATGATC
ATCGAGCGAGGTGCCTGGGTGGGTGTACCCTTACATGGGGTCGCTGGGCT
AGAAATCTCAATCATCGAGGCAGCTAAAAAAATTCATACCCTCCTGCAAG
ACCATGCGCCCCTGAATTCCTTTGTCTCCATCGACGGTGATGACTTGAGC
ACCCGAGCCTTTGTGGTACGAGACAACATGCTTATTTCCCCGCCCAGAGA
ATGGCCACAATTATCGTTTGTGACGCCTCTTCTCTCTTGTGTAGCGGACA
TCTGCATGATCCTTGAGGAAGATCATTTCTTTACCCTTCTCTACAACAAA
CGTCTCTTCTCGAGCAACATGATGGAGGCCATGATGCGCTGCTGGGAGAC
GCTGCTTACCCACGCTTGTCAAGACATGTCCGTGCGACAAGATCTGGTGC
CTGTCGTAAGCCCTATGGATACAAAACGAATGGTGAGCGAGTGGAATCAG
ACAGAGATGCTGTTCCTACCACTCCGGCAAGGCATTCATGAGCTCTTTGA
GGCGCGCGTTGACGAAGCCCCGAGCCGCCTGGCAGTGGTAGGCCCCGTTT
CTGAAGAGGAGAGCGATATAGACCATTATCCCGCACGCGTGCAAGAAGTC
ACATATGGGGAGCTCGAACAACAAGCCAACCGTTTTGCCCATCATCTGCG
ACGGCAGGGCCTTCAAAACGAAGACATTGTGAGCATCTTCCTGGAGAGGT
CCGTGGCCTTCTACGTGGTGATGCTCGGCGTGTTAAAAGCTGGTGCTGCC
TACGTCTCGATTGACACCGACTATCCCGACGACCGCATTCAATTTATGCT
AGAGGATTCAGGAGCCGTGGCGCTGGTGACAATGCAAGCTCTTGCTCCCC
GTGTCCAAGCCAAGGAGGAGATGTCACATCGACCCTTCCGTTTGGTCATA
TTGGATGACCCCTTACATTCGGCAGCTTTGGCTCAAGAACCTCCGACACG
TCTTCTCCGTACAGTGATATCTCATGCCGTGGAAGCGCCGTGCTATGTCA
TCTACACCTCGGGCTCGACGGGCAGACCCAAGGGCGTGCAGATTAGCCAT
GCTAACGCACTCAACCTCATACAGGCTGAAGCGTACATTTACGGAATTCG
ACCCTCAGATCGGGTCCTGCAAGGTTTCTCTCCATCCTTTGACGCCTCGG
TGGAGGAGATGTGGATGGCTCTGCATAATGGTGCGGCACTGGTGGTGGGT
ACTAAGGAGCTGATGCGCTCGGGTCCCGATTTTCCTCGTTACTTGGCAGT
GTTAGGTGTGACTTGTCTTTCAACTGTTCCGACACTTCTCGCTACCTTGG
GAGCTCTGGAATGTTGCCAAAATGGTGACAATTGGGACACACAGCTGCTC
CCCAATGTTCGGATCATTATCACGGGCGGGGAAGCATGCTCTAAGGAGCT
TATGGCGCGCTGGACAACTTGCGGGCGCCGCTTCTTTAACACATACGGTC
CTACCGAGGCCACCGTTGTTGCCACCTACAAGGAATATGGAACTACTGCT
TCTTTTGAATCCTCTGTGCACCGCATCACCATCGGCAGACCTTTGCCCAA
CTACCAGATCTACGTGTTGGATGCGCATTTGAACCTGCTGCCTCCTGGGG
CGCTTGGGGAGCTAGTCATTGGCGGTGTTTCCGTCTCCCGTACGGGGTAC
CTAAACCTGGTGGACAAGACTCAGGATGTATTTAAGCCTGATCCTTTCCG
ATCCGGCAAATCTTGCCGCTACCCGTTGTATCAGAGTGGCGATTTGGCGC
GGATCTCGCTAGCCCCAGATAGCATGGGCGAAATTGAATACTACGGGCGG
ACGGATGCTCAAGTCAAGATCCGCGGATACCGTGTAGAGCCTAGTGAGAT
TGAGGCTGTGCTATGTGGGCTGCCAGGGATTCAATGTGCAGTGATAGACG
TGCAACAGCAAGGTCCTGGGACGATGAAGCAGCTTGTAGCATTTGTAGTG
CCTGCGGCTGGAGATGAGGGTACCTTGTTCCTGAACACAGCTGCGGTGAT
GCAAGCCATGCGTGAGAAACTGCCAGCATTCATGATTCCGTCGCACATCG
AGCCGGTGACTGCCTTTCCTATCTTGCCCTCTGGTAAGCTTGACCGACGC
CGCTTCCCTCAAGTCTTACGTCCCGCCTCTCGCCGAGCGTTTGGTAAAAG
CTTGACGAGGTCATTGTCGCGTGTCTTGGGGGCTAGTTGTGACGTTTCTG
TGGCGAGGACCGGTGGTGACGTACTAGAGGAAGAGCATGATAAGCATCGG
CGCGCGGTAACGTCAGCGTTTGAGCACGTGCTAGGTCTACCAGCCAAAAC
ACTGGCAAGCCCAAAGGCAACTGACGCGGACTTCTTCGACCTCGGTGGCA
ACTCGCTACTAGTCTCCATGCTGGTCACCAAGCTCCGACATAAATATCCC
GCCGTTGCAGCCCGAGATATCTACAACCATAGCGCAGTAGGATCACTTTC
GGATGTCCTCAGGTCTTTGAGTCCCAAAACAGCCTCAGCAGCGACATCGA
CGACGGCACCACAATTTGTGACACTCAATAGCGAGGAAGAGAGACCCTAC
GCTACTAAGCTCACTGACGGTTGCAGTCAAGTGTCGTCTGCTTCATCTCC
ACCTTATGTTCCATGCATGGCCACCACCATTCTTGCCGATCTGGTCCAAC
TGGCTGCCATGTACATCGTTGCGGCCTATATGGGACTTAATGGCCTAGGT
GTATATCTCCTGTACTTCAACTACAAGGACTTACCCACGCTCAAGTTGCT
GGCGATGCTCACGGGCGTCTCCGTTGCCCTCATCCCGCTGGCGTTTGTGG
TGTTGGTGGCGACTAAGTGGCTCATGCTCGGGCGCGTTCAGGAGGGCGAC
CATCCTCTATGGCAATCATACCACCTGCGCTTTTGGTTCGTGCAGTCCTT
GGACAGTGTATTTCGGCTCTTTTATATGGCGTCACTAAAGGGCACGCCTG
TGGTGGCATGGTATCACTGGGCCTTAGGCTCTCGCATGGGTCGAGGCATC
TATCTACAGGGCAGTCTGGAGGGATACGATCTGGTTACAATTGGGGACGG
CTGCACACTCAACTGTCAAGCCAATGTGAGCGCCGTAAGCATAGAAGGGA
ACTACCTGAAGCTGCGCAAGGTAATTCTGGGTCGAGGCGTGACAGTGGGC
GTCCGTGCCATGGTCCAGTCGGAAGTTTGCATGGACGACTACTGCAAGAT
CGAAGCCTTGTCTCTCGTGCCTTCGGCGACCCGCGTGCCGACTCGTCAGA
TTTGGGCAGGGGCGCCAATCGTTTTTGTGGGCTTTAATGAAGACATCGGC
TCAGCACCAACGGGCACCAGTGGTATCATTGGAATACTACAAATTCTGTG
GGGCGTGTTTGAAAAGGTCCTGGAAGCCAGCTTTCTGATGCCCTTCCTCT
ACATGCTTCGTGCGGTGCCGGTGCCATCCGTAACAGAGGATGATCCTGTG
GCTACCCGCTGGCACGCGGCAGGTACGACACTGCTTCATGTCACTTGGCT
CTCGATGGTATTACAGATCGGCATTTTTTTCGCCAGGACATGTCTTGTGG
CAGTACTCAAGCGCCTCCTCCTGCTCGGCGGTCTGCAGGAGGAGACCACC
TACCCCCTGAGTTCGTGGACATTCTTTCGACATTGGGCAGTAGATAATCT
GATGGATTCCCTGGCCGTGTACACCAAACAGCTTCGGGGAACTCTATATT
TACCGCTGTGGTACCAGCTGATGGGCGCACATATTGGGCACTATGCAGAA
ATTTCGGCATTTGAAAACGTTTGTGCTGAGCGTCTAACACTTGGGGACCA
AGTTTTTGTGGCAGACGACGTGATGCTGGGTATGCCGCATGTAGATAGTG
GGATAGTGACGCAACAACCAGTATCAATCGGAGATCGGACCTTTGTGGGC
AACAATTCAGTCGTGGAAGGCGGCACGCATTTACCCCAAGATGTGCTTGT
CGGAGTCCTGACACTGCCACCCTCACAGAGGGCAACAACTGCCCCTGGGG
AGACTTTGCTTGGCTGCCCACCCTTTCGGGTACAAAAGCGGGCTGAACTT
TCGTATCATGCTATTAACACGTATACCCCACCAAGTTGGATGGTATTTGT
ACGCTATGTAGTGGAAGGCGTGGGGTTCCTCCTATTACAGATCTCGTTGG
CGTCATGCTTTGCTCTGCTGTACGTGTCCATGACTTGGTGCTACAACGGG
AACAACAGCAGTGCCAGCCTCGTGACATACTTGCTGACGCTGCCTTTGCT
TGTTATTGGGGAAGGCATAGTGGCGGCCTTCCTTACCCTGTTTTGGAAGT
GGGTTGTCATAGGCCGGTACCGTGCGGGGTCGTACCCACTGTACGGAATA
TATGTGTGGCGAACTGAATTTGTAGAGCGTATAGAAGAGAACCTACTGCA
CACCCACACTTATCCATTAATTAGCGGAACAGTATGGATGCAACTTGTGA
ATCAGGCCATGGGCGTGCGGATGGGGTGTCGAGCCTATCTAGAATTTCCT
TACTTTTGCGAACCTGACCTTTGCACCGTGGGTGATTATTGCAACATGGA
ACGCACGGCTTCCTTACAAGCGCATTTGTTTCAGGATCGCGTGCGAACAA
CGGGTCCCGTCAAAGTGGGCAACTTTTGCAGCTTGGGTTCGGACTCGGTG
GTCCTGTTGGGTGCAGTACTGGGGGACCACTGTGCCTTGAGCTCCATGTC
GTTAGTCCTGCGGTCCGAGGAGTTGCCTTCACATACGCAATGGCACGGCT
TGCCCGCCGTCAAATTGCTGCCAGGGGTTCGGGACGCGCGGAAATACAAT
GATGAGGAAGTGCAGGAGGCCGGAGCAGTTGCGGTGGAAGCGGCGGGTAG
AGTAAGAGAGGGCAAGTAA

Synonyms

Publications