jgi.p|Nanoce1779_2|512371, mRNA_5158 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|512371
Unique NamemRNA_5158
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length414
Alignment locationscaffold_12:602976..603389 -

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Properties
Property NameValue
TranscriptId512457
TrackFilteredModels2
ProteinId512371
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:602976..603389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|512371gene_5158Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5158CDS_5158Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|512371mRNA_5158-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5158 ID=mRNA_5158|Name=jgi.p|Nanoce1779_2|512371|organism=Nannochloropsis oceanica|type=mRNA|length=414bp
ATGCTGGATCAGGCGTGGATTTTCAAGAAGAACGGAGCGGTGCTCTGGTC
TCGTTCCTTGGTGGCCATAAAGGGTCCACCGGGCGGCTTCCTGGGAGGGT
CGATCGTCAACCACCTCATCCGCACTGTCCTGCTTGAGGAAAAGGCAGGC
GCTGCGCAAGCCACCCTCGACAAGCACATCTGCAAGTGGGCGCTGAGCAA
TGAATTACCAGGGGTGGTATTTGTGTTGGTATACAATAAGGGTGTATTTC
ACAATTTGACGTATGTGGATGACTTTCTGCTGCGTCTGAAGGAGGACTTC
CTGGCCCACTTCACCTCAGCCCGCTTGTCGGCAGCGGTGGGGAAGGTGGA
ATACGACGCACGATTTACAAAGATCCTGGCGGCAGTGGAGGCGAGGGCAA
GGGCGTTGAAGCGG
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protein sequence of jgi.p|Nanoce1779_2|512371

>mRNA_5158-protein ID=mRNA_5158-protein|Name=jgi.p|Nanoce1779_2|512371|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MLDQAWIFKKNGAVLWSRSLVAIKGPPGGFLGGSIVNHLIRTVLLEEKAG
AAQATLDKHICKWALSNELPGVVFVLVYNKGVFHNLTYVDDFLLRLKEDF
LAHFTSARLSAAVGKVEYDARFTKILAAVEARARALKR
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mRNA from alignment at scaffold_12:602976..603389-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5158 ID=mRNA_5158|Name=jgi.p|Nanoce1779_2|512371|organism=Nannochloropsis oceanica|type=mRNA|length=414bp|location=Sequence derived from alignment at scaffold_12:602976..603389- (Nannochloropsis oceanica)
ATGCTGGATCAGGCGTGGATTTTCAAGAAGAACGGAGCGGTGCTCTGGTC TCGTTCCTTGGTGGCCATAAAGGGTCCACCGGGCGGCTTCCTGGGAGGGT CGATCGTCAACCACCTCATCCGCACTGTCCTGCTTGAGGAAAAGGCAGGC GCTGCGCAAGCCACCCTCGACAAGCACATCTGCAAGTGGGCGCTGAGCAA TGAATTACCAGGGGTGGTATTTGTGTTGGTATACAATAAGGGTGTATTTC ACAATTTGACGTATGTGGATGACTTTCTGCTGCGTCTGAAGGAGGACTTC CTGGCCCACTTCACCTCAGCCCGCTTGTCGGCAGCGGTGGGGAAGGTGGA ATACGACGCACGATTTACAAAGATCCTGGCGGCAGTGGAGGCGAGGGCAA GGGCGTTGAAGCGG
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Coding sequence (CDS) from alignment at scaffold_12:602976..603389-

>mRNA_5158 ID=mRNA_5158|Name=jgi.p|Nanoce1779_2|512371|organism=Nannochloropsis oceanica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_12:602976..603389- (Nannochloropsis oceanica)
ATGCTGGATCAGGCGTGGATTTTCAAGAAGAACGGAGCGGTGCTCTGGTC
TCGTTCCTTGGTGGCCATAAAGGGTCCACCGGGCGGCTTCCTGGGAGGGT
CGATCGTCAACCACCTCATCCGCACTGTCCTGCTTGAGGAAAAGGCAGGC
GCTGCGCAAGCCACCCTCGACAAGCACATCTGCAAGTGGGCGCTGAGCAA
TGAATTACCAGGGGTGGTATTTGTGTTGGTATACAATAAGGGTGTATTTC
ACAATTTGACGTATGTGGATGACTTTCTGCTGCGTCTGAAGGAGGACTTC
CTGGCCCACTTCACCTCAGCCCGCTTGTCGGCAGCGGTGGGGAAGGTGGA
ATACGACGCACGATTTACAAAGATCCTGGCGGCAGTGGAGGCGAGGGCAA
GGGCGTTGAAGCGG
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Synonyms
Publications