jgi.p|Nanoce1779_2|591570, mRNA_5154 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591570
Unique NamemRNA_5154
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1476
Alignment locationscaffold_12:594217..596309 -

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Properties
Property NameValue
TranscriptId591656
TrackFilteredModels2
ProteinId591570
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:594217..596309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591570gene_5154Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591570mRNA_5154-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5154CDS_5154Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5154 ID=mRNA_5154|Name=jgi.p|Nanoce1779_2|591570|organism=Nannochloropsis oceanica|type=mRNA|length=1476bp
AAACACCAGCGCACCGCAAACCGCATTAGCCATGGAAGAAATTGTTCAAG
GACAGCTTTCGGAGCTCAAAAAGCTGTGGCGGTCTCCGCGGATGCTCCTG
TCGCAATCTCTGAACCTGGCCATGATCGTTTTCTCCGCCCTGATGATTTG
GAAGGGGCTCATGTTTCTGACCAAGAGCGAGAGTCCCGTTGTCGTGGTGC
TCAGTGGGTCTATGGAACCCGCCTTTCAGAGGGGCGACATATTATTTCTA
AACAATCAAGATGATCCGATCCGCGTAGGAGAGATCGTGGTGTTCAAGAT
CAAGGACCGTGACATTCCCATCGTCCATCGTGTACTGGAGGTGCACGAGA
AGGAGGACGGCAAGATCGAGTTGCTGACCAAAGGAGACAACAATCGTGTT
GGCGACCGAGGCCTTTACGCGCCTGGCCAGCTATGGTTGAACCGTGAGGA
TATCCTGGGACGGGCTGCCGGGACATTGAGGTACCTGGGCATGGTTACCA
TCATTCTCAACGACTATCCCATGCTCAAGTACGTATGAGTCCTTTCTTTC
AGCCGTTGTCTGCCCATGTACCCACCCGTTTTTTAACTGTCGCCTTCTTT
CCCGCGCCCTTCCCTTACCTTAGAAACAAAGAACTCATAAAGTCATGTAT
CCCCCCAAACCTCCCTTCCTTCTTTCCTCCCTCCATCCATCTTTCTACCT
GCAGATATGTGCTGGTGGGTATAATGGGGCTCTTCGTACTAACAAATAAA
GAGGTATGCCTCACATAGGGGGGGGGAAGGATAAGGGGAGGAAAAGGGGA
GGGAGAACGAGATTGCGTGCACAATTTATTCAGACTGTCATCCACACACG
CCTCCACTAATTCTCTCCTCATTGGCAAAATTAAATTGTACCACTGCAGA
GTTGATGAATCTTCCGCCACTGAAACAAGAAGAGCATAGCGGCTCTGCGG
TAGCATGGGAAGACAGACAATGGAGCCCGTAGGCAAGCGCAGACGTGAGA
AACAAAAGGAGCGGAGGGAGTGAAATGAGAAATAGAAGAGTGGATGGATG
GATGGATGAAGGGATTGATAGACACAATAGGCTAGGGTGAAAGGGGGCGA
GGAGTGGAGAGAGGAATAGCAAAGGAGGTTAAGCAAAGAAACCGACAGAA
ATAAAAATGTGCATATCAGACAAACGTCAGTCACATCGAGCCCCAAGCGA
GTGCACGTTTCTATCGTCTTCGTCGCAGTGGGGAGAGGGGAAAGAGAGGA
CGATGAAACGACACCCACAAAGAAGCAGTGAAAGAAAGAAAAGAAATGAT
GACGATAACATGCAAATTACAGCCTTTGAAAGCAGTCTGAACGGTCGATC
ATGTTGGGAGACATCCTTCACGTTTTCGCAGTCCCTCGCGTCAGACCCTT
GCACACTGTTACCTATGATGCGCCAATTAATCCGCACGTGCGGCATCAAC
ATTTAAGCTTTTCAATGAAAATGTAC
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protein sequence of jgi.p|Nanoce1779_2|591570

>mRNA_5154-protein ID=mRNA_5154-protein|Name=jgi.p|Nanoce1779_2|591570|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MEEIVQGQLSELKKLWRSPRMLLSQSLNLAMIVFSALMIWKGLMFLTKSE
SPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHR
VLEVHEKEDGKIELLTKGDNNRVGDRGLYAPGQLWLNREDILGRAAGTLR
YLGMVTIILNDYPMLKYV*
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mRNA from alignment at scaffold_12:594217..596309-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5154 ID=mRNA_5154|Name=jgi.p|Nanoce1779_2|591570|organism=Nannochloropsis oceanica|type=mRNA|length=2093bp|location=Sequence derived from alignment at scaffold_12:594217..596309- (Nannochloropsis oceanica)
AAACACCAGCGCACCGCAAACCGCATTAGCCATGGAAGAAATTGTTCAAG
GACAGCTTTCGGAGCTCAAAAAGCTGTGGCGGTCTCCGCGGATGCTCCTG
TCGCAATCTCTGAACCTGGCCATGATCGTTTTCTCCGCCCTGATGATTTG
GAAGGGGCTCATGTTTCTGACCAAGAGCGAGAGTCCCGTTGTCGTGGTGC
TCAGGTACGTGTACAAAGCGACGCGTCTTTTTACTTTCCCGTCTCTCGCT
CCGCCGCTGTGCGTGTGCTAAGAGTACGTCCTTGATTGGCAGGGGGGACC
GCGCCTGCACGCTAGGTCCTATGGCTCCTGTGTGCTTTTACCAACCTTCC
CGCGAAGGCCAATGAAAAAGGGCCTGCCGGAGATATGACGTTTCAACGAT
CAGTCGCATCGCGCTCCCCCCCCTTTCGCGCGATACATTGTCTCGTCCTC
CTCATTCCTTCCTCTCTCCGCCTATGCATCCACAGTGGGTCTATGGAACC
CGCCTTTCAGAGGGGCGACATATTATTTCTAAACAATCAAGATGATCCGA
TCCGCGTAGGAGAGATCGTGGTGTTCAAGATCAAGGACCGTGACATTCCC
ATCGTCCATCGTGTACTGGAGGTGCACGAGAAGTGAGTGGAGCGAGGGAG
GGGAAGAGGGAAGAGGGAAGAAGGGAGGGCTGATAAATTAGCCGCCAGTT
GAGCAATGCAGCTGTTTTTGGATGCCGCTAGGGTCTTGACTCAGATATCA
ACATACACACACACACACATATACACACACACACACACACACACACACAC
ACATCTATCCATCCAACTCTGCAGGGAGGACGGCAAGATCGAGTTGCTGA
CCAAAGGAGACAACAATCGTGTTGGCGACCGAGGCCTTTACGCGCCTGGC
CAGCTATGGTTGAACCGTGAGGATATCCTGGGACGGGCTGCCGGGTATGT
TTATCTGAGTGCGGGGAAGTGTGTGGGTGGAAATATGCAGGCTGCCCTCG
CATTTCTCCTCGAATGGACTAGCACACATTCCTTTGTTATTTGGGTCTTC
TCCGCAGGCTAATCATTTGATTATCTCACCATGTACAGGACATTGAGGTA
CCTGGGCATGGTTACCATCATTCTCAACGACTATCCCATGCTCAAGTACG
TATGAGTCCTTTCTTTCAGCCGTTGTCTGCCCATGTACCCACCCGTTTTT
TAACTGTCGCCTTCTTTCCCGCGCCCTTCCCTTACCTTAGAAACAAAGAA
CTCATAAAGTCATGTATCCCCCCAAACCTCCCTTCCTTCTTTCCTCCCTC
CATCCATCTTTCTACCTGCAGATATGTGCTGGTGGGTATAATGGGGCTCT
TCGTACTAACAAATAAAGAGGTATGCCTCACATAGGGGGGGGGAAGGATA
AGGGGAGGAAAAGGGGAGGGAGAACGAGATTGCGTGCACAATTTATTCAG
ACTGTCATCCACACACGCCTCCACTAATTCTCTCCTCATTGGCAAAATTA
AATTGTACCACTGCAGAGTTGATGAATCTTCCGCCACTGAAACAAGAAGA
GCATAGCGGCTCTGCGGTAGCATGGGAAGACAGACAATGGAGCCCGTAGG
CAAGCGCAGACGTGAGAAACAAAAGGAGCGGAGGGAGTGAAATGAGAAAT
AGAAGAGTGGATGGATGGATGGATGAAGGGATTGATAGACACAATAGGCT
AGGGTGAAAGGGGGCGAGGAGTGGAGAGAGGAATAGCAAAGGAGGTTAAG
CAAAGAAACCGACAGAAATAAAAATGTGCATATCAGACAAACGTCAGTCA
CATCGAGCCCCAAGCGAGTGCACGTTTCTATCGTCTTCGTCGCAGTGGGG
AGAGGGGAAAGAGAGGACGATGAAACGACACCCACAAAGAAGCAGTGAAA
GAAAGAAAAGAAATGATGACGATAACATGCAAATTACAGCCTTTGAAAGC
AGTCTGAACGGTCGATCATGTTGGGAGACATCCTTCACGTTTTCGCAGTC
CCTCGCGTCAGACCCTTGCACACTGTTACCTATGATGCGCCAATTAATCC
GCACGTGCGGCATCAACATTTAAGCTTTTCAATGAAAATGTAC
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Coding sequence (CDS) from alignment at scaffold_12:594217..596309-

>mRNA_5154 ID=mRNA_5154|Name=jgi.p|Nanoce1779_2|591570|organism=Nannochloropsis oceanica|type=CDS|length=2028bp|location=Sequence derived from alignment at scaffold_12:594217..596309- (Nannochloropsis oceanica)
GACATTGAGGTACCTGGGCATGGTTACCATCATTCTCAACGACTATCCCA
TGCTCAAGTACGTATGAGGAGGACGGCAAGATCGAGTTGCTGACCAAAGG
AGACAACAATCGTGTTGGCGACCGAGGCCTTTACGCGCCTGGCCAGCTAT
GGTTGAACCGTGAGGATATCCTGGGACGGGCTGCCGGTGGGTCTATGGAA
CCCGCCTTTCAGAGGGGCGACATATTATTTCTAAACAATCAAGATGATCC
GATCCGCGTAGGAGAGATCGTGGTGTTCAAGATCAAGGACCGTGACATTC
CCATCGTCCATCGTGTACTGGAGGTGCACGAGAAATGGAAGAAATTGTTC
AAGGACAGCTTTCGGAGCTCAAAAAGCTGTGGCGGTCTCCGCGGATGCTC
CTGTCGCAATCTCTGAACCTGGCCATGATCGTTTTCTCCGCCCTGATGAT
TTGGAAGGGGCTCATGTTTCTGACCAAGAGCGAGAGTCCCGTTGTCGTGG
TGCTCAGGACATTGAGGTACCTGGGCATGGTTACCATCATTCTCAACGAC
TATCCCATGCTCAAGTACGTATGAGGAGGACGGCAAGATCGAGTTGCTGA
CCAAAGGAGACAACAATCGTGTTGGCGACCGAGGCCTTTACGCGCCTGGC
CAGCTATGGTTGAACCGTGAGGATATCCTGGGACGGGCTGCCGGTGGGTC
TATGGAACCCGCCTTTCAGAGGGGCGACATATTATTTCTAAACAATCAAG
ATGATCCGATCCGCGTAGGAGAGATCGTGGTGTTCAAGATCAAGGACCGT
GACATTCCCATCGTCCATCGTGTACTGGAGGTGCACGAGAAATGGAAGAA
ATTGTTCAAGGACAGCTTTCGGAGCTCAAAAAGCTGTGGCGGTCTCCGCG
GATGCTCCTGTCGCAATCTCTGAACCTGGCCATGATCGTTTTCTCCGCCC
TGATGATTTGGAAGGGGCTCATGTTTCTGACCAAGAGCGAGAGTCCCGTT
GTCGTGGTGCTCAGGACATTGAGGTACCTGGGCATGGTTACCATCATTCT
CAACGACTATCCCATGCTCAAGTACGTATGAGGAGGACGGCAAGATCGAG
TTGCTGACCAAAGGAGACAACAATCGTGTTGGCGACCGAGGCCTTTACGC
GCCTGGCCAGCTATGGTTGAACCGTGAGGATATCCTGGGACGGGCTGCCG
GTGGGTCTATGGAACCCGCCTTTCAGAGGGGCGACATATTATTTCTAAAC
AATCAAGATGATCCGATCCGCGTAGGAGAGATCGTGGTGTTCAAGATCAA
GGACCGTGACATTCCCATCGTCCATCGTGTACTGGAGGTGCACGAGAAAT
GGAAGAAATTGTTCAAGGACAGCTTTCGGAGCTCAAAAAGCTGTGGCGGT
CTCCGCGGATGCTCCTGTCGCAATCTCTGAACCTGGCCATGATCGTTTTC
TCCGCCCTGATGATTTGGAAGGGGCTCATGTTTCTGACCAAGAGCGAGAG
TCCCGTTGTCGTGGTGCTCAGGACATTGAGGTACCTGGGCATGGTTACCA
TCATTCTCAACGACTATCCCATGCTCAAGTACGTATGAGGAGGACGGCAA
GATCGAGTTGCTGACCAAAGGAGACAACAATCGTGTTGGCGACCGAGGCC
TTTACGCGCCTGGCCAGCTATGGTTGAACCGTGAGGATATCCTGGGACGG
GCTGCCGGTGGGTCTATGGAACCCGCCTTTCAGAGGGGCGACATATTATT
TCTAAACAATCAAGATGATCCGATCCGCGTAGGAGAGATCGTGGTGTTCA
AGATCAAGGACCGTGACATTCCCATCGTCCATCGTGTACTGGAGGTGCAC
GAGAAATGGAAGAAATTGTTCAAGGACAGCTTTCGGAGCTCAAAAAGCTG
TGGCGGTCTCCGCGGATGCTCCTGTCGCAATCTCTGAACCTGGCCATGAT
CGTTTTCTCCGCCCTGATGATTTGGAAGGGGCTCATGTTTCTGACCAAGA
GCGAGAGTCCCGTTGTCGTGGTGCTCAG
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Synonyms
Publications