jgi.p|Nanoce1779_2|591536, mRNA_5146 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591536
Unique Name	mRNA_5146
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1998
Alignment location	scaffold_12:574185..576441 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591622
Track	FilteredModels2
ProteinId	591536

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:574185..576441 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591536	gene_5146	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591536	mRNA_5146-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5146	CDS_5146	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:574185..576441+
coding sequence from alignment at scaffold_12:574185..576441+

mRNA sequence

>mRNA_5146 ID=mRNA_5146|Name=jgi.p|Nanoce1779_2|591536|organism=Nannochloropsis oceanica|type=mRNA|length=1998bp
ACAGACTCCCTTCCCACCCATCCGAGCCAAACCATGGGACGCGGCGGTGA
GAAGACGGTGACCCCTCTTCGCAAAAAAACCCTCCTGGATGCCGCTTCCA
CGATCAGCGGCACAGTCAGACCAAGCAAGGCAGTAGAGGCCCTGCCCACG
GAGGAGCTGCGTAAGAAGGCCGCACAATACGGTATCAACACTTCGGTCGA
CCGCGAAACACTGCTGAGGGAGCTGGCTCCCTACGGCGATATCCTCCTCC
GCAATGACGCCCCTAAATCCCTGCCCCTTGCCCCTCCTCCTTTCACCCTC
TCCGACATCAAGAACGCTGTTCCCCGTCACTGCTTTGAGCGTTCCCTCTC
CACCTCCCTCTTCCACTTGACCATCGACTTGATCCAAGTCGCTGTCCTCG
GGTACCTTGCCTCATTACTGGGCCACTCCGACGTCCCGCCCATGTCTCGT
TATATTCTATGGCCGTTGTACTGGTACGCGCAAGGCTCTGTGCTGACGGG
AGTGTGGGTCATTGCCCACGAGTGCGGGCACCAATCGTTTTCGCCTTACG
AGAGCGTGAACAACTTCTTTGGGTGGCTCTTGCACTCGGCCTTGCTTGTG
CCCTATCACTCTTGGAGGATTTCCCATGGAAAGCACCACAACAACACGGG
GAGCTGCGAGAATGACGAGGTCTTTGCGCCGCCTATTAAGGAGGAACTGA
TGGACGAGATTTTGCTTCACTCCCCTTTGGCGAATCTGGTGCAGATAATC
ATAATGTTGACCATCGGATGGATGCCGGGGTACCTGCTCCTGAACGCTAC
GGGGCCTAGGAAATACAAGGGACTGAGCAATAGCCACTTTAACCCAAATT
CGGCGTTGTTTTCTCCGAAGGACCGTCTGGACATTATTTGGTCCGACATT
GGGTTTTTCGTGGCCTTGGCCTGCGTGGTATATGCCTGTGTGCAGTTTGG
ATTTCAAACGGTGGGAAAGTATTACCTGCTGCCGTACATGGTGGTCAATT
ATCACCTGGTCCTCATCACGTACCTGCAGCACACGGACGTCTTCATCCCC
CACTTTCGGGGGAGCGAGTGGACGTGGTTTAGGGGCGCCCTTTGCACGGT
CGACCGATCCTTCGGCTGGCTTTTGGACCATACGTTTCACCATATCAGTG
ACACTCATGTGTGCCACCACATCTTCAGCAAGATGCCGTTCTACCACGCG
CAGGAGGCGAGTGAGCACATTCGCAAGGCGTTGGGCGACTATTATTTGAA
GGATGATACCCCGATTTGGAAGGCATTGTGGCGAAGTTATACCCTGTGCA
AGTACGTGGACTCGGAGGAGACGACGGTATTCTACAAGCAGCGGGCATAG
GGACCGGGGAATGGGTGAAGAGCGAGGCAGGTCAGTTTTTTATTGATGAG
GATGACAGTGACGCGACTGTTATGTGGATGTGTGGTTGAGCGTGTTGACG
CGACGAAGGAAGGGGACGAGCGTGTAGTTTTATTTTCATGTATGCAGAGC
CGGAGAAAGGAGTGAAGAGGTGGAGGAGAGGTAGACTTGAACAGATGAGG
TGATGAGGCGGCATGTTACATTCGAGTCTGCTTTGCGCGTGTGAGTGCCT
GTGTTGGTGTTTGTTGGCATTGGCGTGGATTTTGGTGTCGTCGACCTCCT
CAATCTTTGACTATTTCTCGCGCACAACTGGACGATGAGGGCTGAGGCGA
GTGTTGCGGATTGAGGGAGAGAGCAATAGCACAAATAAAATACCCTTTTG
AACGGTAGCTACTGACATGAGGAGAAGGAGAGAAGAAAAAAATCATCCAC
AACAAGAGAGGATACCCTTTTTAATAGCATGAGTGCTTGTAGTAGAAGTA
GATAATAATAGAAAAAGGATCGATCGAAGAAGAGCGGAAGAGCGCGTCTT
CCACTCGTCCCTTTTTTGGGGGGTGAGGGGAGGTTTATTACGCCAGCACA
ACAACAAGTCAACCAGAGGGAAAGGAATAAAAACAAGAAATTTACATA

protein sequence of jgi.p|Nanoce1779_2|591536

>mRNA_5146-protein ID=mRNA_5146-protein|Name=jgi.p|Nanoce1779_2|591536|organism=Nannochloropsis oceanica|type=polypeptide|length=439bp
MGRGGEKTVTPLRKKTLLDAASTISGTVRPSKAVEALPTEELRKKAAQYG
INTSVDRETLLRELAPYGDILLRNDAPKSLPLAPPPFTLSDIKNAVPRHC
FERSLSTSLFHLTIDLIQVAVLGYLASLLGHSDVPPMSRYILWPLYWYAQ
GSVLTGVWVIAHECGHQSFSPYESVNNFFGWLLHSALLVPYHSWRISHGK
HHNNTGSCENDEVFAPPIKEELMDEILLHSPLANLVQIIIMLTIGWMPGY
LLLNATGPRKYKGLSNSHFNPNSALFSPKDRLDIIWSDIGFFVALACVVY
ACVQFGFQTVGKYYLLPYMVVNYHLVLITYLQHTDVFIPHFRGSEWTWFR
GALCTVDRSFGWLLDHTFHHISDTHVCHHIFSKMPFYHAQEASEHIRKAL
GDYYLKDDTPIWKALWRSYTLCKYVDSEETTVFYKQRA*

mRNA from alignment at scaffold_12:574185..576441+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5146 ID=mRNA_5146|Name=jgi.p|Nanoce1779_2|591536|organism=Nannochloropsis oceanica|type=mRNA|length=2257bp|location=Sequence derived from alignment at scaffold_12:574185..576441+ (Nannochloropsis oceanica)
ACAGACTCCCTTCCCACCCATCCGAGCCAAACCATGGGACGCGGCGGTGA
GAAGACGGTGACCCCTCTTCGCAAAAAAACCCTCCTGGATGCCGCTTCCA
CGATCAGCGGCACAGTCAGACCAAGCAAGGCAGTAGAGGCCCTGCCCACG
GAGGAGCTGCGTAAGAAGGCCGCACAATACGGTATCAACACTTCGGTCGA
CCGCGAAACACTGCTGAGGGAGCTGGTAAGTGCTTGTGATCGCTTGAGGG
GTGGATGGGTAAAAACAGTTCCCTCCCATTCGTGCATGTGGTCAGACGGA
TATAAGAATTACGTGCCATGCCCTTGACATTTTGATGTCACCGCGCTGTC
TTCACTTCCCGCTCCAATAGCTATTATGTACGTGGACTGGCGGCTGCTGC
CCCTTGTCCTTTTTTCTTCCCTCCCTTGCATGCCACCTAAGCATACCTCG
CTCATTCACTTTCCGCATGTCATCATAACCACAGGCTCCCTACGGCGATA
TCCTCCTCCGCAATGACGCCCCTAAATCCCTGCCCCTTGCCCCTCCTCCT
TTCACCCTCTCCGACATCAAGAACGCTGTTCCCCGTCACTGCTTTGAGCG
TTCCCTCTCCACCTCCCTCTTCCACTTGACCATCGACTTGATCCAAGTCG
CTGTCCTCGGGTACCTTGCCTCATTACTGGGCCACTCCGACGTCCCGCCC
ATGTCTCGTTATATTCTATGGCCGTTGTACTGGTACGCGCAAGGCTCTGT
GCTGACGGGAGTGTGGGTCATTGCCCACGAGTGCGGGCACCAATCGTTTT
CGCCTTACGAGAGCGTGAACAACTTCTTTGGGTGGCTCTTGCACTCGGCC
TTGCTTGTGCCCTATCACTCTTGGAGGATTTCCCATGGAAAGCACCACAA
CAACACGGGGAGCTGCGAGAATGACGAGGTCTTTGCGCCGCCTATTAAGG
AGGAACTGATGGACGAGATTTTGCTTCACTCCCCTTTGGCGAATCTGGTG
CAGATAATCATAATGTTGACCATCGGATGGATGCCGGGGTACCTGCTCCT
GAACGCTACGGGGCCTAGGAAATACAAGGGACTGAGCAATAGCCACTTTA
ACCCAAATTCGGCGTTGTTTTCTCCGAAGGACCGTCTGGACATTATTTGG
TCCGACATTGGGTTTTTCGTGGCCTTGGCCTGCGTGGTATATGCCTGTGT
GCAGTTTGGATTTCAAACGGTGGGAAAGTATTACCTGCTGCCGTACATGG
TGGTCAATTATCACCTGGTCCTCATCACGTACCTGCAGCACACGGACGTC
TTCATCCCCCACTTTCGGGGGAGCGAGTGGACGTGGTTTAGGGGCGCCCT
TTGCACGGTCGACCGATCCTTCGGCTGGCTTTTGGACCATACGTTTCACC
ATATCAGTGACACTCATGTGTGCCACCACATCTTCAGCAAGATGCCGTTC
TACCACGCGCAGGAGGCGAGTGAGCACATTCGCAAGGCGTTGGGCGACTA
TTATTTGAAGGATGATACCCCGATTTGGAAGGCATTGTGGCGAAGTTATA
CCCTGTGCAAGTACGTGGACTCGGAGGAGACGACGGTATTCTACAAGCAG
CGGGCATAGGGACCGGGGAATGGGTGAAGAGCGAGGCAGGTCAGTTTTTT
ATTGATGAGGATGACAGTGACGCGACTGTTATGTGGATGTGTGGTTGAGC
GTGTTGACGCGACGAAGGAAGGGGACGAGCGTGTAGTTTTATTTTCATGT
ATGCAGAGCCGGAGAAAGGAGTGAAGAGGTGGAGGAGAGGTAGACTTGAA
CAGATGAGGTGATGAGGCGGCATGTTACATTCGAGTCTGCTTTGCGCGTG
TGAGTGCCTGTGTTGGTGTTTGTTGGCATTGGCGTGGATTTTGGTGTCGT
CGACCTCCTCAATCTTTGACTATTTCTCGCGCACAACTGGACGATGAGGG
CTGAGGCGAGTGTTGCGGATTGAGGGAGAGAGCAATAGCACAAATAAAAT
ACCCTTTTGAACGGTAGCTACTGACATGAGGAGAAGGAGAGAAGAAAAAA
ATCATCCACAACAAGAGAGGATACCCTTTTTAATAGCATGAGTGCTTGTA
GTAGAAGTAGATAATAATAGAAAAAGGATCGATCGAAGAAGAGCGGAAGA
GCGCGTCTTCCACTCGTCCCTTTTTTGGGGGGTGAGGGGAGGTTTATTAC
GCCAGCACAACAACAAGTCAACCAGAGGGAAAGGAATAAAAACAAGAAAT
TTACATA

Coding sequence (CDS) from alignment at scaffold_12:574185..576441+

>mRNA_5146 ID=mRNA_5146|Name=jgi.p|Nanoce1779_2|591536|organism=Nannochloropsis oceanica|type=CDS|length=2634bp|location=Sequence derived from alignment at scaffold_12:574185..576441+ (Nannochloropsis oceanica)
ATGGGACGCGGCGGTGAGAAGACGGTGACCCCTCTTCGCAAAAAAACCCT
CCTGGATGCCGCTTCCACGATCAGCGGCACAGTCAGACCAAGCAAGGCAG
TAGAGGCCCTGCCCACGGAGGAGCTGCGTAAGAAGGCCGCACAATACGGT
ATCAACACTTCGGTCGACCGCGAAACACTGCTGAGGGAGCTGGCTCCCTA
CGGCGATATCCTCCTCCGCAATGACGCCCCTAAATCCCTGCCCCTTGCCC
CTCCTCCTTTCACCCTCTCCGACATCAAGAACGCTGTTCCCCGTCACTGC
TTTGAGCGTTCCCTCTCCACCTCCCTCTTCCACTTGACCATCGACTTGAT
CCAAGTCGCTGTCCTCGGGTACCTTGCCTCATTACTGGGCCACTCCGACG
TCCCGCCCATGTCTCGTTATATTCTATGGCCGTTGTACTGGTACGCGCAA
GGCTCTGTGCTGACGGGAGTGTGGGTCATTGCCCACGAGTGCGGGCACCA
ATCGTTTTCGCCTTACGAGAGCGTGAACAACTTCTTTGGGTGGCTCTTGC
ACTCGGCCTTGCTTGTGCCCTATCACTCTTGGAGGATTTCCCATGGAAAG
CACCACAACAACACGGGGAGCTGCGAGAATGACGAGGTCTTTGCGCCGCC
TATTAAGGAGGAACTGATGGACGAGATTTTGCTTCACTCCCCTTTGGCGA
ATCTGGTGCAGATAATCATAATGTTGACCATCGGATGGATGCCGGGGTAC
CTGCTCCTGAACGCTACGGGGCCTAGGAAATACAAGGGACTGAGCAATAG
CCACTTTAACCCAAATTCGGCGTTGTTTTCTCCGAAGGACCGTCTGGACA
TTATTTGGTCCGACATTGGGTTTTTCGTGGCCTTGGCCTGCGTGGTATAT
GCCTGTGTGCAGTTTGGATTTCAAACGGTGGGAAAGTATTACCTGCTGCC
GTACATGGTGGTCAATTATCACCTGGTCCTCATCACGTACCTGCAGCACA
CGGACGTCTTCATCCCCCACTTTCGGGGGAGCGAGTGGACGTGGTTTAGG
GGCGCCCTTTGCACGGTCGACCGATCCTTCGGCTGGCTTTTGGACCATAC
GTTTCACCATATCAGTGACACTCATGTGTGCCACCACATCTTCAGCAAGA
TGCCGTTCTACCACGCGCAGGAGGCGAGTGAGCACATTCGCAAGGCGTTG
GGCGACTATTATTTGAAGGATGATACCCCGATTTGGAAGGCATTGTGGCG
AAGTTATACCCTGTGCAAGTACGTGGACTCGGAGGAGACGACGGTATTCT
ACAAGCAGCGGGCATAGATGGGACGCGGCGGTGAGAAGACGGTGACCCCT
CTTCGCAAAAAAACCCTCCTGGATGCCGCTTCCACGATCAGCGGCACAGT
CAGACCAAGCAAGGCAGTAGAGGCCCTGCCCACGGAGGAGCTGCGTAAGA
AGGCCGCACAATACGGTATCAACACTTCGGTCGACCGCGAAACACTGCTG
AGGGAGCTGGCTCCCTACGGCGATATCCTCCTCCGCAATGACGCCCCTAA
ATCCCTGCCCCTTGCCCCTCCTCCTTTCACCCTCTCCGACATCAAGAACG
CTGTTCCCCGTCACTGCTTTGAGCGTTCCCTCTCCACCTCCCTCTTCCAC
TTGACCATCGACTTGATCCAAGTCGCTGTCCTCGGGTACCTTGCCTCATT
ACTGGGCCACTCCGACGTCCCGCCCATGTCTCGTTATATTCTATGGCCGT
TGTACTGGTACGCGCAAGGCTCTGTGCTGACGGGAGTGTGGGTCATTGCC
CACGAGTGCGGGCACCAATCGTTTTCGCCTTACGAGAGCGTGAACAACTT
CTTTGGGTGGCTCTTGCACTCGGCCTTGCTTGTGCCCTATCACTCTTGGA
GGATTTCCCATGGAAAGCACCACAACAACACGGGGAGCTGCGAGAATGAC
GAGGTCTTTGCGCCGCCTATTAAGGAGGAACTGATGGACGAGATTTTGCT
TCACTCCCCTTTGGCGAATCTGGTGCAGATAATCATAATGTTGACCATCG
GATGGATGCCGGGGTACCTGCTCCTGAACGCTACGGGGCCTAGGAAATAC
AAGGGACTGAGCAATAGCCACTTTAACCCAAATTCGGCGTTGTTTTCTCC
GAAGGACCGTCTGGACATTATTTGGTCCGACATTGGGTTTTTCGTGGCCT
TGGCCTGCGTGGTATATGCCTGTGTGCAGTTTGGATTTCAAACGGTGGGA
AAGTATTACCTGCTGCCGTACATGGTGGTCAATTATCACCTGGTCCTCAT
CACGTACCTGCAGCACACGGACGTCTTCATCCCCCACTTTCGGGGGAGCG
AGTGGACGTGGTTTAGGGGCGCCCTTTGCACGGTCGACCGATCCTTCGGC
TGGCTTTTGGACCATACGTTTCACCATATCAGTGACACTCATGTGTGCCA
CCACATCTTCAGCAAGATGCCGTTCTACCACGCGCAGGAGGCGAGTGAGC
ACATTCGCAAGGCGTTGGGCGACTATTATTTGAAGGATGATACCCCGATT
TGGAAGGCATTGTGGCGAAGTTATACCCTGTGCAAGTACGTGGACTCGGA
GGAGACGACGGTATTCTACAAGCAGCGGGCATAG

Synonyms

Publications