jgi.p|Nanoce1779_2|591536, gene_5146 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591536
Unique Name	gene_5146
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_12:574185..576441 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591622
ProteinId	591536
Product name	fatty acid desaturase
Portal id	Nanoce1779_2

Mutants

The following records are associated with this feature:


Title	Method	Accession date	Last modified date
delta-12 fatty acid desaturases	Overexpression	2019-05-10	2020-04-01

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:574185..576441 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
GO annotation for N. oceanica CCMP1779 v2	2020-03-30
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016491	oxidoreductase activity

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL010	ncniL010	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO11G02480	NO11G02480	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591536	mRNA_5146-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591536	mRNA_5146	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|591536

>mRNA_5146-protein ID=mRNA_5146-protein|Name=jgi.p|Nanoce1779_2|591536|organism=Nannochloropsis oceanica|type=polypeptide|length=439bp
MGRGGEKTVTPLRKKTLLDAASTISGTVRPSKAVEALPTEELRKKAAQYG
INTSVDRETLLRELAPYGDILLRNDAPKSLPLAPPPFTLSDIKNAVPRHC
FERSLSTSLFHLTIDLIQVAVLGYLASLLGHSDVPPMSRYILWPLYWYAQ
GSVLTGVWVIAHECGHQSFSPYESVNNFFGWLLHSALLVPYHSWRISHGK
HHNNTGSCENDEVFAPPIKEELMDEILLHSPLANLVQIIIMLTIGWMPGY
LLLNATGPRKYKGLSNSHFNPNSALFSPKDRLDIIWSDIGFFVALACVVY
ACVQFGFQTVGKYYLLPYMVVNYHLVLITYLQHTDVFIPHFRGSEWTWFR
GALCTVDRSFGWLLDHTFHHISDTHVCHHIFSKMPFYHAQEASEHIRKAL
GDYYLKDDTPIWKALWRSYTLCKYVDSEETTVFYKQRA*

Synonyms

Publications


Year	Publication
2018	Poliner E, Pulman JA, Zienkiewicz K, Childs K, Benning C, Farré EM. A toolkit for Nannochloropsis oceanica CCMP1779 enables gene stacking and genetic engineering of the eicosapentaenoic acid pathway for enhanced long-chain polyunsaturated fatty acid production. Plant biotechnology journal. 2018 01; 16(1):298-309.