jgi.p|Nanoce1779_2|591409, mRNA_5107 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591409
Unique NamemRNA_5107
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1359
Alignment locationscaffold_12:481539..482897 -

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Properties
Property NameValue
TranscriptId591495
TrackFilteredModels2
ProteinId591409
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:481539..482897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591409gene_5107Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591409mRNA_5107-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5107CDS_5107Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5107 ID=mRNA_5107|Name=jgi.p|Nanoce1779_2|591409|organism=Nannochloropsis oceanica|type=mRNA|length=1359bp
ACAGCAAGCCAATGAAGCGACCAAGAACGAGAACATCCACCCCCAACCCC
CTTCTTTTCATCCTCTTCCTTCCGTCAGCCGCCGCCCTGCGCACGTCCTT
TTCCCGCGGCCACGTGCCCCGCCTCGATGCCCGCACCCTTGCCTCTCAAC
AGGCTTTGGATGACTTGATCATGGCTGGACCCTGCCTCCTCACGCACGCC
TTTGATAAGGACCCGGGTACACGCAAGATGTCAGACGAGGCATTCAGTGA
CTCCTTTTTCAAGGACTTTCAAGATGTGGAGGTGATGGTTCAAATCAAGA
AGAACGCCAGAGGCTCTCGGCCTCAATTCTATACAGGCACCTTGGCCGAG
ATACTGGACGGGATGATGGAGAAAAGCACACATGAGGAGGCTTGGTATTT
GCTGAGTGAGAATATGTTGGACAATGCACTGGACTGCAAGATGAAAGAAC
CTCTCGTTCTACCATCCTCCTTGTTCGGGGGTTTTGATTATTTTGACCTG
TTCCCTCCTAAAGTCCGCCCGAAGAAGCACTGCCTCATTCTCGGAGGGAC
GGGGGGCCGTTCTTTCCTACACGCCGATCCCTTTGAATGGACGGGTTTGA
ACTATTTGATGGAAGGTCAGAAGCTATGGACTTTTGTCCCTCCCTCTGTG
CCACGTGCGGCCTTGGCGCTCGAAAGAGTCAAGCCTGATGCGTGGGGGGA
GGATGTCTCTGCAGGTTGGAAGAGCGCGGTTCACGACTTGTACCACACCT
TACCCTATCTTTCGTCCAGCACCGTGGCGTTGGACTTTCCTGCAGAGTTA
CAGGGCGTGGAGGGGGTCCAAACAGTCGTGCAGGAGGAGGGGGATCTAGT
GATTATTCCTCCAGGGTGGGCGCATCAGGTGTACCATCTACAGCCGAGTT
TGTGCCTAGCATGGCAAATCTGCAATGCACTTAATTTTAAAAGTGTGATT
CGACATATGTTAGTGTGGAGTGTGGAGTCAAAAAAGAACGAAAAGCAGCA
GCAGCGCCGTCGACGGAGGAAAGGTGACGGAGAGAGGATGGAGGAAAGGG
AGAGGGAGGAAGGGGAGAAGGTGGATGTGGTGGCTTTGGTGGAGGCTATT
TGGAAGGAACATGAGGGGAGGAAAGGAGAGGAAGAGAGGATGAGGGTTAC
GGCTACAATTGAGCGGGCTATTAAAGCGGCGATGGTGCTAAGGTATGGCC
CTCAGAAGGCCAAGGAGGCATATAAAGGGTTGTGGGAAGCATTATAAGCG
AGTAAATTAAATGTTAATCAGTAAACAAGTCAACAACGCTTGTATGGTAC
ACACATAGCAGCAGGGTTAAATAAAGTAAAAACAGAGCTGAGTAGAGATG
AGAAAGACC
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protein sequence of jgi.p|Nanoce1779_2|591409

>mRNA_5107-protein ID=mRNA_5107-protein|Name=jgi.p|Nanoce1779_2|591409|organism=Nannochloropsis oceanica|type=polypeptide|length=412bp
MKRPRTRTSTPNPLLFILFLPSAAALRTSFSRGHVPRLDARTLASQQALD
DLIMAGPCLLTHAFDKDPGTRKMSDEAFSDSFFKDFQDVEVMVQIKKNAR
GSRPQFYTGTLAEILDGMMEKSTHEEAWYLLSENMLDNALDCKMKEPLVL
PSSLFGGFDYFDLFPPKVRPKKHCLILGGTGGRSFLHADPFEWTGLNYLM
EGQKLWTFVPPSVPRAALALERVKPDAWGEDVSAGWKSAVHDLYHTLPYL
SSSTVALDFPAELQGVEGVQTVVQEEGDLVIIPPGWAHQVYHLQPSLCLA
WQICNALNFKSVIRHMLVWSVESKKNEKQQQRRRRRKGDGERMEEREREE
GEKVDVVALVEAIWKEHEGRKGEEERMRVTATIERAIKAAMVLRYGPQKA
KEAYKGLWEAL*
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mRNA from alignment at scaffold_12:481539..482897-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5107 ID=mRNA_5107|Name=jgi.p|Nanoce1779_2|591409|organism=Nannochloropsis oceanica|type=mRNA|length=1359bp|location=Sequence derived from alignment at scaffold_12:481539..482897- (Nannochloropsis oceanica)
ACAGCAAGCCAATGAAGCGACCAAGAACGAGAACATCCACCCCCAACCCC
CTTCTTTTCATCCTCTTCCTTCCGTCAGCCGCCGCCCTGCGCACGTCCTT
TTCCCGCGGCCACGTGCCCCGCCTCGATGCCCGCACCCTTGCCTCTCAAC
AGGCTTTGGATGACTTGATCATGGCTGGACCCTGCCTCCTCACGCACGCC
TTTGATAAGGACCCGGGTACACGCAAGATGTCAGACGAGGCATTCAGTGA
CTCCTTTTTCAAGGACTTTCAAGATGTGGAGGTGATGGTTCAAATCAAGA
AGAACGCCAGAGGCTCTCGGCCTCAATTCTATACAGGCACCTTGGCCGAG
ATACTGGACGGGATGATGGAGAAAAGCACACATGAGGAGGCTTGGTATTT
GCTGAGTGAGAATATGTTGGACAATGCACTGGACTGCAAGATGAAAGAAC
CTCTCGTTCTACCATCCTCCTTGTTCGGGGGTTTTGATTATTTTGACCTG
TTCCCTCCTAAAGTCCGCCCGAAGAAGCACTGCCTCATTCTCGGAGGGAC
GGGGGGCCGTTCTTTCCTACACGCCGATCCCTTTGAATGGACGGGTTTGA
ACTATTTGATGGAAGGTCAGAAGCTATGGACTTTTGTCCCTCCCTCTGTG
CCACGTGCGGCCTTGGCGCTCGAAAGAGTCAAGCCTGATGCGTGGGGGGA
GGATGTCTCTGCAGGTTGGAAGAGCGCGGTTCACGACTTGTACCACACCT
TACCCTATCTTTCGTCCAGCACCGTGGCGTTGGACTTTCCTGCAGAGTTA
CAGGGCGTGGAGGGGGTCCAAACAGTCGTGCAGGAGGAGGGGGATCTAGT
GATTATTCCTCCAGGGTGGGCGCATCAGGTGTACCATCTACAGCCGAGTT
TGTGCCTAGCATGGCAAATCTGCAATGCACTTAATTTTAAAAGTGTGATT
CGACATATGTTAGTGTGGAGTGTGGAGTCAAAAAAGAACGAAAAGCAGCA
GCAGCGCCGTCGACGGAGGAAAGGTGACGGAGAGAGGATGGAGGAAAGGG
AGAGGGAGGAAGGGGAGAAGGTGGATGTGGTGGCTTTGGTGGAGGCTATT
TGGAAGGAACATGAGGGGAGGAAAGGAGAGGAAGAGAGGATGAGGGTTAC
GGCTACAATTGAGCGGGCTATTAAAGCGGCGATGGTGCTAAGGTATGGCC
CTCAGAAGGCCAAGGAGGCATATAAAGGGTTGTGGGAAGCATTATAAGCG
AGTAAATTAAATGTTAATCAGTAAACAAGTCAACAACGCTTGTATGGTAC
ACACATAGCAGCAGGGTTAAATAAAGTAAAAACAGAGCTGAGTAGAGATG
AGAAAGACC
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Coding sequence (CDS) from alignment at scaffold_12:481539..482897-

>mRNA_5107 ID=mRNA_5107|Name=jgi.p|Nanoce1779_2|591409|organism=Nannochloropsis oceanica|type=CDS|length=1236bp|location=Sequence derived from alignment at scaffold_12:481539..482897- (Nannochloropsis oceanica)
ATGAAGCGACCAAGAACGAGAACATCCACCCCCAACCCCCTTCTTTTCAT
CCTCTTCCTTCCGTCAGCCGCCGCCCTGCGCACGTCCTTTTCCCGCGGCC
ACGTGCCCCGCCTCGATGCCCGCACCCTTGCCTCTCAACAGGCTTTGGAT
GACTTGATCATGGCTGGACCCTGCCTCCTCACGCACGCCTTTGATAAGGA
CCCGGGTACACGCAAGATGTCAGACGAGGCATTCAGTGACTCCTTTTTCA
AGGACTTTCAAGATGTGGAGGTGATGGTTCAAATCAAGAAGAACGCCAGA
GGCTCTCGGCCTCAATTCTATACAGGCACCTTGGCCGAGATACTGGACGG
GATGATGGAGAAAAGCACACATGAGGAGGCTTGGTATTTGCTGAGTGAGA
ATATGTTGGACAATGCACTGGACTGCAAGATGAAAGAACCTCTCGTTCTA
CCATCCTCCTTGTTCGGGGGTTTTGATTATTTTGACCTGTTCCCTCCTAA
AGTCCGCCCGAAGAAGCACTGCCTCATTCTCGGAGGGACGGGGGGCCGTT
CTTTCCTACACGCCGATCCCTTTGAATGGACGGGTTTGAACTATTTGATG
GAAGGTCAGAAGCTATGGACTTTTGTCCCTCCCTCTGTGCCACGTGCGGC
CTTGGCGCTCGAAAGAGTCAAGCCTGATGCGTGGGGGGAGGATGTCTCTG
CAGGTTGGAAGAGCGCGGTTCACGACTTGTACCACACCTTACCCTATCTT
TCGTCCAGCACCGTGGCGTTGGACTTTCCTGCAGAGTTACAGGGCGTGGA
GGGGGTCCAAACAGTCGTGCAGGAGGAGGGGGATCTAGTGATTATTCCTC
CAGGGTGGGCGCATCAGGTGTACCATCTACAGCCGAGTTTGTGCCTAGCA
TGGCAAATCTGCAATGCACTTAATTTTAAAAGTGTGATTCGACATATGTT
AGTGTGGAGTGTGGAGTCAAAAAAGAACGAAAAGCAGCAGCAGCGCCGTC
GACGGAGGAAAGGTGACGGAGAGAGGATGGAGGAAAGGGAGAGGGAGGAA
GGGGAGAAGGTGGATGTGGTGGCTTTGGTGGAGGCTATTTGGAAGGAACA
TGAGGGGAGGAAAGGAGAGGAAGAGAGGATGAGGGTTACGGCTACAATTG
AGCGGGCTATTAAAGCGGCGATGGTGCTAAGGTATGGCCCTCAGAAGGCC
AAGGAGGCATATAAAGGGTTGTGGGAAGCATTATAA
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Synonyms
Publications