jgi.p|Nanoce1779_2|591362, mRNA_5094 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591362
Unique Name	mRNA_5094
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1863
Alignment location	scaffold_12:437932..439794 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591448
Track	FilteredModels2
ProteinId	591362

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:437932..439794 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591362	gene_5094	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591362	mRNA_5094-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5094	CDS_5094	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:437932..439794+
coding sequence from alignment at scaffold_12:437932..439794+

mRNA sequence

>mRNA_5094 ID=mRNA_5094|Name=jgi.p|Nanoce1779_2|591362|organism=Nannochloropsis oceanica|type=mRNA|length=1863bp
ACAGCAACATGGCCTTGCGCGGCGCCTTGGACGGCCTGCTGGCCCTGGCC
CCCGGGCCTGCTTTCAAAGCCCCGACCGCCCAGGTAATCAACCTGAGCCT
TGGAGCCAATATCATTGCCAGGACAGGTGAGGATTACATCTGCGCAACGA
CGGACTGGTGGCCCCCCAACAAGTGCGACTATGGGATCTGTGCCTGGAGC
AACACCCCTTACGGGCCCAACCCCTCCATACCCAATCTCGACTTGAGCCA
ACCCTTGTTCAAGGCAGCTTTCGATACCCTGTCGCCGTTTATTTGGCGCT
TGGGCGGGTCCTTGCAGGATGACATTACGTACGAAGAGCCAGGGAACCCT
GCAGTAGTCTGCCCTCCCATAACTGACGACCCTACCGCCAAATGGGGCTT
TACGGGCGGCTGCCTCAATCGGAGCCGCTGGTCCGAAATCGCAAATTTTG
CCAAAGACCACGAGGCGAAATTGGTGTTTGGGTTGAATGGGTTGAAGGGC
CGTGTGCATGTCGAGGGGAAACAGTGGGAGGGGATGTGGGACCAAAGCAA
TGCCAAGTCGCTGATGACTTACACGAAAGAAGCAGGACTCCCCATCTATG
CTTGGGAGCTCGGAAATGAACTTGGGGGTTTCAATGGCATCCAGGCTCAA
CTATCTGCGCGAGATGTAGGACAGGATTTTGTGACGTTAAGAGGAATGGT
CACGGAACTCTGGGGGGAAGGGGAGGAGGCGCCTTTGGTGGTGGGTCCTG
ATACGGACTTGGACATCCCATGGTTTACTGAGTTTTTTGAGGCAGCACAG
GGGAGTTTGGATGGGGTGGCAATACACATGTATGCTTTGGGAGCTGGTGT
TGACCCTACCTTGGCTGGAAAAATCATAAACCCCTCACATATGGCCAAAG
CCACCCGGACTGCCGAAGACCTCACGCAGCTCATGCAAGGGTTGGTTGCG
AAAAATGTTGGGGGTGTGGTAAAGATGCCTCAGTTGTGGATGGGTGAGGA
TGGGGGAGCGTATAATTCAGGGCAAAACGGGACGACCAATCGATTTACGG
CCGGATTTTGGTCCTTGAATGAGCTGGGGATTTTCGCGAAAAATGGTTTC
ACCGTTTATTGTCGCCAGACGCTTTTGGGAGGGAATTACGGATTGCTTGA
CAAGGATACTTTGCTGCCGAATCCGGACTTTTTCAACTATCTGTTGTTTA
AACGGCTGATGGGGCGGGAGGTGCTGAGAGTAGAGAGCAGTAGTCCAGAG
GTGACGGTGTATGCGCATTGTACGAGGAAGGGAGGGAAGGAGGACGAGCT
GCAAGGGTTGGAGCCTGGGGCGGTTACTGTTTTGATAATTAATTTCATGG
CTCAACATGACGCGCAGATTGGCGTCTTGAAGCTGGAGGGAGAGTGGAGG
GATCTGTTGCCAGAACCCCGCTTGGAATATACCTTGACCTCAGGCATGCC
GGGAAAGCTCAACGGAACCTTTTCCCTTTTGAATGGCAGCCCGCTTCAGG
TGTCGTCGGAGGGAGTATATCCCGCCATGGACCCCTTGGTGGTGAAGAAG
GGCGAGGACTTGGTGCTGCCGAAGCAGAGCTATGGATTTTATGTGTTCCC
CAAGGCGGGTGTGCGGGCTTGCATGTAAAAAGAAGACAGCGGGAGGGTGA
GATGCACATAGAGGGAAAGATTAGAGATAGATGAAACCAAGGGTGTATAA
ACTGCGTGTGTAGGATGGAGAGAGACAGCGAAATGTTCAACTCGGCGGCG
AGCGAAGACAGAAACCAAACGAAGAGATGAACGGCAAGAGAAACAAGCAA
AAGATCCAACAGCGCGCAAGTGTATCAACAACAATCACACTGTATCGAGG
TAGCTGGACATTG

protein sequence of jgi.p|Nanoce1779_2|591362

>mRNA_5094-protein ID=mRNA_5094-protein|Name=jgi.p|Nanoce1779_2|591362|organism=Nannochloropsis oceanica|type=polypeptide|length=540bp
MALRGALDGLLALAPGPAFKAPTAQVINLSLGANIIARTGEDYICATTDW
WPPNKCDYGICAWSNTPYGPNPSIPNLDLSQPLFKAAFDTLSPFIWRLGG
SLQDDITYEEPGNPAVVCPPITDDPTAKWGFTGGCLNRSRWSEIANFAKD
HEAKLVFGLNGLKGRVHVEGKQWEGMWDQSNAKSLMTYTKEAGLPIYAWE
LGNELGGFNGIQAQLSARDVGQDFVTLRGMVTELWGEGEEAPLVVGPDTD
LDIPWFTEFFEAAQGSLDGVAIHMYALGAGVDPTLAGKIINPSHMAKATR
TAEDLTQLMQGLVAKNVGGVVKMPQLWMGEDGGAYNSGQNGTTNRFTAGF
WSLNELGIFAKNGFTVYCRQTLLGGNYGLLDKDTLLPNPDFFNYLLFKRL
MGREVLRVESSSPEVTVYAHCTRKGGKEDELQGLEPGAVTVLIINFMAQH
DAQIGVLKLEGEWRDLLPEPRLEYTLTSGMPGKLNGTFSLLNGSPLQVSS
EGVYPAMDPLVVKKGEDLVLPKQSYGFYVFPKAGVRACM*

mRNA from alignment at scaffold_12:437932..439794+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5094 ID=mRNA_5094|Name=jgi.p|Nanoce1779_2|591362|organism=Nannochloropsis oceanica|type=mRNA|length=1863bp|location=Sequence derived from alignment at scaffold_12:437932..439794+ (Nannochloropsis oceanica)
ACAGCAACATGGCCTTGCGCGGCGCCTTGGACGGCCTGCTGGCCCTGGCC
CCCGGGCCTGCTTTCAAAGCCCCGACCGCCCAGGTAATCAACCTGAGCCT
TGGAGCCAATATCATTGCCAGGACAGGTGAGGATTACATCTGCGCAACGA
CGGACTGGTGGCCCCCCAACAAGTGCGACTATGGGATCTGTGCCTGGAGC
AACACCCCTTACGGGCCCAACCCCTCCATACCCAATCTCGACTTGAGCCA
ACCCTTGTTCAAGGCAGCTTTCGATACCCTGTCGCCGTTTATTTGGCGCT
TGGGCGGGTCCTTGCAGGATGACATTACGTACGAAGAGCCAGGGAACCCT
GCAGTAGTCTGCCCTCCCATAACTGACGACCCTACCGCCAAATGGGGCTT
TACGGGCGGCTGCCTCAATCGGAGCCGCTGGTCCGAAATCGCAAATTTTG
CCAAAGACCACGAGGCGAAATTGGTGTTTGGGTTGAATGGGTTGAAGGGC
CGTGTGCATGTCGAGGGGAAACAGTGGGAGGGGATGTGGGACCAAAGCAA
TGCCAAGTCGCTGATGACTTACACGAAAGAAGCAGGACTCCCCATCTATG
CTTGGGAGCTCGGAAATGAACTTGGGGGTTTCAATGGCATCCAGGCTCAA
CTATCTGCGCGAGATGTAGGACAGGATTTTGTGACGTTAAGAGGAATGGT
CACGGAACTCTGGGGGGAAGGGGAGGAGGCGCCTTTGGTGGTGGGTCCTG
ATACGGACTTGGACATCCCATGGTTTACTGAGTTTTTTGAGGCAGCACAG
GGGAGTTTGGATGGGGTGGCAATACACATGTATGCTTTGGGAGCTGGTGT
TGACCCTACCTTGGCTGGAAAAATCATAAACCCCTCACATATGGCCAAAG
CCACCCGGACTGCCGAAGACCTCACGCAGCTCATGCAAGGGTTGGTTGCG
AAAAATGTTGGGGGTGTGGTAAAGATGCCTCAGTTGTGGATGGGTGAGGA
TGGGGGAGCGTATAATTCAGGGCAAAACGGGACGACCAATCGATTTACGG
CCGGATTTTGGTCCTTGAATGAGCTGGGGATTTTCGCGAAAAATGGTTTC
ACCGTTTATTGTCGCCAGACGCTTTTGGGAGGGAATTACGGATTGCTTGA
CAAGGATACTTTGCTGCCGAATCCGGACTTTTTCAACTATCTGTTGTTTA
AACGGCTGATGGGGCGGGAGGTGCTGAGAGTAGAGAGCAGTAGTCCAGAG
GTGACGGTGTATGCGCATTGTACGAGGAAGGGAGGGAAGGAGGACGAGCT
GCAAGGGTTGGAGCCTGGGGCGGTTACTGTTTTGATAATTAATTTCATGG
CTCAACATGACGCGCAGATTGGCGTCTTGAAGCTGGAGGGAGAGTGGAGG
GATCTGTTGCCAGAACCCCGCTTGGAATATACCTTGACCTCAGGCATGCC
GGGAAAGCTCAACGGAACCTTTTCCCTTTTGAATGGCAGCCCGCTTCAGG
TGTCGTCGGAGGGAGTATATCCCGCCATGGACCCCTTGGTGGTGAAGAAG
GGCGAGGACTTGGTGCTGCCGAAGCAGAGCTATGGATTTTATGTGTTCCC
CAAGGCGGGTGTGCGGGCTTGCATGTAAAAAGAAGACAGCGGGAGGGTGA
GATGCACATAGAGGGAAAGATTAGAGATAGATGAAACCAAGGGTGTATAA
ACTGCGTGTGTAGGATGGAGAGAGACAGCGAAATGTTCAACTCGGCGGCG
AGCGAAGACAGAAACCAAACGAAGAGATGAACGGCAAGAGAAACAAGCAA
AAGATCCAACAGCGCGCAAGTGTATCAACAACAATCACACTGTATCGAGG
TAGCTGGACATTG

Coding sequence (CDS) from alignment at scaffold_12:437932..439794+

>mRNA_5094 ID=mRNA_5094|Name=jgi.p|Nanoce1779_2|591362|organism=Nannochloropsis oceanica|type=CDS|length=1620bp|location=Sequence derived from alignment at scaffold_12:437932..439794+ (Nannochloropsis oceanica)
ATGGCCTTGCGCGGCGCCTTGGACGGCCTGCTGGCCCTGGCCCCCGGGCC
TGCTTTCAAAGCCCCGACCGCCCAGGTAATCAACCTGAGCCTTGGAGCCA
ATATCATTGCCAGGACAGGTGAGGATTACATCTGCGCAACGACGGACTGG
TGGCCCCCCAACAAGTGCGACTATGGGATCTGTGCCTGGAGCAACACCCC
TTACGGGCCCAACCCCTCCATACCCAATCTCGACTTGAGCCAACCCTTGT
TCAAGGCAGCTTTCGATACCCTGTCGCCGTTTATTTGGCGCTTGGGCGGG
TCCTTGCAGGATGACATTACGTACGAAGAGCCAGGGAACCCTGCAGTAGT
CTGCCCTCCCATAACTGACGACCCTACCGCCAAATGGGGCTTTACGGGCG
GCTGCCTCAATCGGAGCCGCTGGTCCGAAATCGCAAATTTTGCCAAAGAC
CACGAGGCGAAATTGGTGTTTGGGTTGAATGGGTTGAAGGGCCGTGTGCA
TGTCGAGGGGAAACAGTGGGAGGGGATGTGGGACCAAAGCAATGCCAAGT
CGCTGATGACTTACACGAAAGAAGCAGGACTCCCCATCTATGCTTGGGAG
CTCGGAAATGAACTTGGGGGTTTCAATGGCATCCAGGCTCAACTATCTGC
GCGAGATGTAGGACAGGATTTTGTGACGTTAAGAGGAATGGTCACGGAAC
TCTGGGGGGAAGGGGAGGAGGCGCCTTTGGTGGTGGGTCCTGATACGGAC
TTGGACATCCCATGGTTTACTGAGTTTTTTGAGGCAGCACAGGGGAGTTT
GGATGGGGTGGCAATACACATGTATGCTTTGGGAGCTGGTGTTGACCCTA
CCTTGGCTGGAAAAATCATAAACCCCTCACATATGGCCAAAGCCACCCGG
ACTGCCGAAGACCTCACGCAGCTCATGCAAGGGTTGGTTGCGAAAAATGT
TGGGGGTGTGGTAAAGATGCCTCAGTTGTGGATGGGTGAGGATGGGGGAG
CGTATAATTCAGGGCAAAACGGGACGACCAATCGATTTACGGCCGGATTT
TGGTCCTTGAATGAGCTGGGGATTTTCGCGAAAAATGGTTTCACCGTTTA
TTGTCGCCAGACGCTTTTGGGAGGGAATTACGGATTGCTTGACAAGGATA
CTTTGCTGCCGAATCCGGACTTTTTCAACTATCTGTTGTTTAAACGGCTG
ATGGGGCGGGAGGTGCTGAGAGTAGAGAGCAGTAGTCCAGAGGTGACGGT
GTATGCGCATTGTACGAGGAAGGGAGGGAAGGAGGACGAGCTGCAAGGGT
TGGAGCCTGGGGCGGTTACTGTTTTGATAATTAATTTCATGGCTCAACAT
GACGCGCAGATTGGCGTCTTGAAGCTGGAGGGAGAGTGGAGGGATCTGTT
GCCAGAACCCCGCTTGGAATATACCTTGACCTCAGGCATGCCGGGAAAGC
TCAACGGAACCTTTTCCCTTTTGAATGGCAGCCCGCTTCAGGTGTCGTCG
GAGGGAGTATATCCCGCCATGGACCCCTTGGTGGTGAAGAAGGGCGAGGA
CTTGGTGCTGCCGAAGCAGAGCTATGGATTTTATGTGTTCCCCAAGGCGG
GTGTGCGGGCTTGCATGTAA

Synonyms

Publications