Properties
Property Name | Value |
TranscriptId | 591148 |
Track | FilteredModels2 |
ProteinId | 591062 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_12 | supercontig | scaffold_12:218214..221010 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5004 ID=mRNA_5004|Name=jgi.p|Nanoce1779_2|591062|organism=Nannochloropsis oceanica|type=mRNA|length=2457bp CAGAGAAACGGGCTCAGGGAGCACCGGCGCGCAATCCAGCTCTCTCAAAC CTTAGTTGCCTATTCCACCTGAGCATTCGGCCCCCGTTCTTGTTCTTGAG CTTTCGTCAATCCACCCGGCAAGCCTCCGTACCGACTGAGCACTTGAGCA ACAGGTGCTTCTTGTGCCGCTTCCCCACCTTTCATCATTGTGACCCCGGG CGACATGAGTGAGATCGATTCTCTCTTTGGTGCCCTTGGGGACACAGGCG ACGTTGACGCAGATCTGAGCATACTGGAGGCCCTCTGCGGGCTTGAAGGT ATCGATGCCTCCGCTGCTGCGGCTGCAGCCGTGGAGGAGGAACAGTCGGA CGAAGACGAGGAGGACTCCTTCGATGGGGACGGACAGCCGCGTAAGAAGC GGGCACGTCGCACCCGTTCAGAATTGAATGAAGTGGAGAAGCAACGCACC CGGCGAATCAATGAGCAAATCCAATCTTTGCGGGCTTTGCTGGAAGCCTC GGGGCTGAATACCAAGAAAGATAAATTCTCCATTCTGAAGAACACTACCG AGTACCTGAAAAAGTTGAAACTCCTCCTCAACAAATCGCAAGCTCAAATC CAGGCTTTAGTCGCCAGCCGCCGAGTCGCGGCTGCAGCAAATGCAGCGTC AGCAGCAGCAGGAGGGGGCATGGCCGCGGCACCTGCCCCTGTAGTTACTG TCCCACTTGCGTTGCCCAAGGCCGGGGGAGTGGAGGATACCAAGTACTAC GTGGATGTGGACCCGAATGTGACCCAGGGGGCGTTCGCCGGAAGGGATGT CGGGGGGGATGATGGGGGAAGAGTGCCTCAGGCGGGCACGGCATTGGAGA TGATGATTCAGAGACCTCCGATTGCTCCGGGTACGGTGGCGGAGTCGGGA TCTTGGGCCCCGAACAAGAAAAGCGCGGACTATGCCCTGATGTTTCAGAA CGCCTCCATTGCCATGGCGGTGGCGAGCCTGGACGGGAATTTCGTCGATT GCAATGGGGCGTTTTCCATCATCTCCGGGTATAATAACAGGGAGGTGCTG CAGCGGTCGGTGTTTGACTTGACCCCCGCGGAGGACTGCCAGGAATTGAT GTCTATCGTGGGGAAAATGATGGAGAGTCCTGCGGAGAGCGCGAAACACT TTTGGAAGCGCTGTTGTTTCGAGAATCGTGACTGCCATTGTTTCGTGAGC ATGTGGCTGGTGCGGAAAGCTTCCGGAGAGCCGGTGTACTTCCAGTGTGC TGTCTTGCCCTTGGAGGACTACCCCATGTCCAGCAAGTCTGTCACGTATG ACGCAAGCTCGCAGGGGAAAGAATTGGCGGAGAGGGGGGAAGGGGAAGAC GGAGGGACGGTGCATGCGATTGAGGGCCAGGAGGAGGTGCAGGTGAGTGA GGCAAATACCCTGTTGCAGCCGGAATTTCGCTGTGGGGAAGGAGAAGGAG AAGCAGCAATAGGAAGAGGTGGAGGAGGACGGGAGGGCGATTTACAGTTT GAGTTGCCGGCGCCGCGGTCGTCACAGTTCACAGAGAAAGGATTGGCCGT GGGAGCGTCTGGGGAATGTCATGATAGGCCGTCGCCGTCCTCGTCGTCAT GATTGCCGCAGGAGCAGATGGATCCAGAGGGAAAGCACAAGGACCAAAGG AAGAGAGAAGGTGGGAGAGAACACAACGCAAGTGGGAGAGGAAAAGGGAA GGACAATGCTGTCCCAGCCCTCATTCGTTTTGCGCTGCCGGGGTATAGGC GGAAGAGCGAGCGAGAGAGAGAGAGAGAGAGAAGGAAGATGTGTATATAT GCGAACAGCGAGACGGTTAAATCAGAATGACGAGGACGAGGACGTCGAAA GTGAAAAAACAAGCAGCAGAAAAGACATAATTGGACTTGCGGCCGATCAC AAGAACGAAAGTGTCAAGACTTAAGAGGCATCAAGAAGTAATCAAAAGGA GTAACTTCCATCAGCAACGTGTGTGAGTAGTCAGTGAAGAGGCGGAGAGA GAAGTGACATATGACAGAACAAAAAGCGGCCAAGAAGAAAAAAGAAGAGA GGAGGGTAGAGGATATAGAGAAGGAAAGCGCTTTGGAACAAATCGAGAGG AGAGGGGGAGGATTATTGCATTCATGATGTGGTAAGGCGAAAGAAGAGCA AATCGCAGTTTTAATATTTTGAAAGAAGACCACGAGTAGGATGCGCGTGA GCGTACAAAGATGACGATCTGAGGAGCATCTTCAGCCGGCACAAGCAACA TCAGCGAAAATCATTTTTTGGTCAAGGACACGCACATCCATTTCCACACT TCCCTGTGTTACCAACTGGTCGGTCGTGCTTGCCTGCCACTCGTGGGTTT AGGGAGTCGCGGAGATACGGGAGGAAATAGGGGAACAGTGAAGAGCAGGG GCAGGAACAACCGACCAAAATGGAAGTGAGAAAGAAATATGAAACGGGGG AATTTGA back to topprotein sequence of jgi.p|Nanoce1779_2|591062 >mRNA_5004-protein ID=mRNA_5004-protein|Name=jgi.p|Nanoce1779_2|591062|organism=Nannochloropsis oceanica|type=polypeptide|length=466bp MSEIDSLFGALGDTGDVDADLSILEALCGLEGIDASAAAAAAVEEEQSDE DEEDSFDGDGQPRKKRARRTRSELNEVEKQRTRRINEQIQSLRALLEASG LNTKKDKFSILKNTTEYLKKLKLLLNKSQAQIQALVASRRVAAAANAASA AAGGGMAAAPAPVVTVPLALPKAGGVEDTKYYVDVDPNVTQGAFAGRDVG GDDGGRVPQAGTALEMMIQRPPIAPGTVAESGSWAPNKKSADYALMFQNA SIAMAVASLDGNFVDCNGAFSIISGYNNREVLQRSVFDLTPAEDCQELMS IVGKMMESPAESAKHFWKRCCFENRDCHCFVSMWLVRKASGEPVYFQCAV LPLEDYPMSSKSVTYDASSQGKELAERGEGEDGGTVHAIEGQEEVQVSEA NTLLQPEFRCGEGEGEAAIGRGGGGREGDLQFELPAPRSSQFTEKGLAVG ASGECHDRPSPSSSS* back to topmRNA from alignment at scaffold_12:218214..221010+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5004 ID=mRNA_5004|Name=jgi.p|Nanoce1779_2|591062|organism=Nannochloropsis oceanica|type=mRNA|length=2797bp|location=Sequence derived from alignment at scaffold_12:218214..221010+ (Nannochloropsis oceanica) CAGAGAAACGGGCTCAGGGAGCACCGGCGCGCAATCCAGCTCTCTCAAAC
CTTAGTTGCCTATTCCACCTGAGCATTCGGCCCCCGTTCTTGTTCTTGAG
CTTTCGTCAATCCACCCGGCAAGCCTCCGTACCGACTGAGCACTTGAGCA
ACAGGTGCTTCTTGTGCCGCTTCCCCACCTTTCATCATTGTGACCCCGGG
CGACATGAGTGAGATCGATTCTCTCTTTGGTGCCCTTGGGGACACAGGCG
ACGTTGACGCAGGTAAGAACTAAAGGCCCAGGGGGAGGCTTGGCAACGCA
AGGAATGGACGACCGGCACGGCCACCCTTACTCGAACCAACCACGGAAGC
AAACGCACACAAAAGTTAAGAAAAATAATTGTTCACCAGAGCAGGTAATC
ACACGAGTTCGCGGCCTTCCCCCCTCTCCCATTCCCCCCTTCCCCCTCCC
CCCTCAGATCTGAGCATACTGGAGGCCCTCTGCGGGCTTGAAGGTATCGA
TGCCTCCGCTGCTGCGGCTGCAGCCGTGGAGGAGGAACAGTCGGACGAAG
ACGAGGAGGACTCCTTCGATGGGGACGGACAGCCGCGTAAGAAGCGGGCA
CGTCGCACCCGTTCAGAATTGAATGAAGTGGAGAAGCAACGCACCCGGCG
AATCAATGAGCAAATCCAATCTTTGCGGGCTTTGCTGGAAGCCTCGGGGC
TGAATACCAAGAAAGATAAATTCTCCATTCTGAAGAAGTACGTGCTCGCG
AGGGAGGAAAGAAGGGAGCGATGGGTGCCTGGGTGTGTGCTAGTTACGTC
GGTATTACTGGTAGTCTCTTGATTCCTAGTGCTCATCAGCCTTTCTCTCC
TTCCCTCCCTTCCTTTCCCGTACCCAAACCAGCACTACCGAGTACCTGAA
AAAGTTGAAACTCCTCCTCAACAAATCGCAAGCTCAAATCCAGGCTTTAG
TCGCCAGCCGCCGAGTCGCGGCTGCAGCAAATGCAGCGTCAGCAGCAGCA
GGAGGGGGCATGGCCGCGGCACCTGCCCCTGTAGTTACTGTCCCACTTGC
GTTGCCCAAGGCCGGGGGAGTGGAGGATACCAAGTACTACGTGGATGTGG
ACCCGAATGTGACCCAGGGGGCGTTCGCCGGAAGGGATGTCGGGGGGGAT
GATGGGGGAAGAGTGCCTCAGGCGGGCACGGCATTGGAGATGATGATTCA
GAGACCTCCGATTGCTCCGGGTACGGTGGCGGAGTCGGGATCTTGGGCCC
CGAACAAGAAAAGCGCGGACTATGCCCTGATGTTTCAGAACGCCTCCATT
GCCATGGCGGTGGCGAGCCTGGACGGGAATTTCGTCGATTGCAATGGGGC
GTTTTCCATCATCTCCGGGTATAATAACAGGGAGGTGCTGCAGCGGTCGG
TGTTTGACTTGACCCCCGCGGAGGACTGCCAGGAATTGATGTCTATCGTG
GGGAAAATGATGGAGAGTCCTGCGGAGAGCGCGAAACACTTTTGGAAGCG
CTGTTGTTTCGAGAATCGTGACTGCCATTGTTTCGTGAGCATGTGGCTGG
TGCGGAAAGCTTCCGGAGAGCCGGTGTACTTCCAGTGTGCTGTCTTGCCC
TTGGAGGACTACCCCATGTCCAGCAAGTCTGTCACGTATGACGCAAGCTC
GCAGGGGAAAGAATTGGCGGAGAGGGGGGAAGGGGAAGACGGAGGGACGG
TGCATGCGATTGAGGGCCAGGAGGAGGTGCAGGTGAGTGAGGCAAATACC
CTGTTGCAGCCGGAATTTCGCTGTGGGGAAGGAGAAGGAGAAGCAGCAAT
AGGAAGAGGTGGAGGAGGACGGGAGGGCGATTTACAGTTTGAGTTGCCGG
CGCCGCGGTCGTCACAGTTCACAGAGAAAGGATTGGCCGTGGGAGCGTCT
GGGGAATGTCATGATAGGCCGTCGCCGTCCTCGTCGTCATGATTGCCGCA
GGAGCAGATGGATCCAGAGGGAAAGCACAAGGACCAAAGGAAGAGAGAAG
GTGGGAGAGAACACAACGCAAGTGGGAGAGGAAAAGGGAAGGACAATGCT
GTCCCAGCCCTCATTCGTTTTGCGCTGCCGGGGTATAGGCGGAAGAGCGA
GCGAGAGAGAGAGAGAGAGAGAAGGAAGATGTGTATATATGCGAACAGCG
AGACGGTTAAATCAGAATGACGAGGACGAGGACGTCGAAAGTGAAAAAAC
AAGCAGCAGAAAAGACATAATTGGACTTGCGGCCGATCACAAGAACGAAA
GTGTCAAGACTTAAGAGGCATCAAGAAGTAATCAAAAGGAGTAACTTCCA
TCAGCAACGTGTGTGAGTAGTCAGTGAAGAGGCGGAGAGAGAAGTGACAT
ATGACAGAACAAAAAGCGGCCAAGAAGAAAAAAGAAGAGAGGAGGGTAGA
GGATATAGAGAAGGAAAGCGCTTTGGAACAAATCGAGAGGAGAGGGGGAG
GATTATTGCATTCATGATGTGGTAAGGCGAAAGAAGAGCAAATCGCAGTT
TTAATATTTTGAAAGAAGACCACGAGTAGGATGCGCGTGAGCGTACAAAG
ATGACGATCTGAGGAGCATCTTCAGCCGGCACAAGCAACATCAGCGAAAA
TCATTTTTTGGTCAAGGACACGCACATCCATTTCCACACTTCCCTGTGTT
ACCAACTGGTCGGTCGTGCTTGCCTGCCACTCGTGGGTTTAGGGAGTCGC
GGAGATACGGGAGGAAATAGGGGAACAGTGAAGAGCAGGGGCAGGAACAA
CCGACCAAAATGGAAGTGAGAAAGAAATATGAAACGGGGGAATTTGA back to topCoding sequence (CDS) from alignment at scaffold_12:218214..221010+ >mRNA_5004 ID=mRNA_5004|Name=jgi.p|Nanoce1779_2|591062|organism=Nannochloropsis oceanica|type=CDS|length=4194bp|location=Sequence derived from alignment at scaffold_12:218214..221010+ (Nannochloropsis oceanica) ATGAGTGAGATCGATTCTCTCTTTGGTGCCCTTGGGGACACAGGCGACGT TGACGCAGATCTGAGCATACTGGAGGCCCTCTGCGGGCTTGAAGGTATCG ATGCCTCCGCTGCTGCGGCTGCAGCCGTGGAGGAGGAACAGTCGGACGAA GACGAGGAGGACTCCTTCGATGGGGACGGACAGCCGCGTAAGAAGCGGGC ACGTCGCACCCGTTCAGAATTGAATGAAGTGGAGAAGCAACGCACCCGGC GAATCAATGAGCAAATCCAATCTTTGCGGGCTTTGCTGGAAGCCTCGGGG CTGAATACCAAGAAAGATAAATTCTCCATTCTGAAGAACACTACCGAGTA CCTGAAAAAGTTGAAACTCCTCCTCAACAAATCGCAAGCTCAAATCCAGG CTTTAGTCGCCAGCCGCCGAGTCGCGGCTGCAGCAAATGCAGCGTCAGCA GCAGCAGGAGGGGGCATGGCCGCGGCACCTGCCCCTGTAGTTACTGTCCC ACTTGCGTTGCCCAAGGCCGGGGGAGTGGAGGATACCAAGTACTACGTGG ATGTGGACCCGAATGTGACCCAGGGGGCGTTCGCCGGAAGGGATGTCGGG GGGGATGATGGGGGAAGAGTGCCTCAGGCGGGCACGGCATTGGAGATGAT GATTCAGAGACCTCCGATTGCTCCGGGTACGGTGGCGGAGTCGGGATCTT GGGCCCCGAACAAGAAAAGCGCGGACTATGCCCTGATGTTTCAGAACGCC TCCATTGCCATGGCGGTGGCGAGCCTGGACGGGAATTTCGTCGATTGCAA TGGGGCGTTTTCCATCATCTCCGGGTATAATAACAGGGAGGTGCTGCAGC GGTCGGTGTTTGACTTGACCCCCGCGGAGGACTGCCAGGAATTGATGTCT ATCGTGGGGAAAATGATGGAGAGTCCTGCGGAGAGCGCGAAACACTTTTG GAAGCGCTGTTGTTTCGAGAATCGTGACTGCCATTGTTTCGTGAGCATGT GGCTGGTGCGGAAAGCTTCCGGAGAGCCGGTGTACTTCCAGTGTGCTGTC TTGCCCTTGGAGGACTACCCCATGTCCAGCAAGTCTGTCACGTATGACGC AAGCTCGCAGGGGAAAGAATTGGCGGAGAGGGGGGAAGGGGAAGACGGAG GGACGGTGCATGCGATTGAGGGCCAGGAGGAGGTGCAGGTGAGTGAGGCA AATACCCTGTTGCAGCCGGAATTTCGCTGTGGGGAAGGAGAAGGAGAAGC AGCAATAGGAAGAGGTGGAGGAGGACGGGAGGGCGATTTACAGTTTGAGT TGCCGGCGCCGCGGTCGTCACAGTTCACAGAGAAAGGATTGGCCGTGGGA GCGTCTGGGGAATGTCATGATAGGCCGTCGCCGTCCTCGTCGTCATGAAT GAGTGAGATCGATTCTCTCTTTGGTGCCCTTGGGGACACAGGCGACGTTG ACGCAGATCTGAGCATACTGGAGGCCCTCTGCGGGCTTGAAGGTATCGAT GCCTCCGCTGCTGCGGCTGCAGCCGTGGAGGAGGAACAGTCGGACGAAGA CGAGGAGGACTCCTTCGATGGGGACGGACAGCCGCGTAAGAAGCGGGCAC GTCGCACCCGTTCAGAATTGAATGAAGTGGAGAAGCAACGCACCCGGCGA ATCAATGAGCAAATCCAATCTTTGCGGGCTTTGCTGGAAGCCTCGGGGCT GAATACCAAGAAAGATAAATTCTCCATTCTGAAGAACACTACCGAGTACC TGAAAAAGTTGAAACTCCTCCTCAACAAATCGCAAGCTCAAATCCAGGCT TTAGTCGCCAGCCGCCGAGTCGCGGCTGCAGCAAATGCAGCGTCAGCAGC AGCAGGAGGGGGCATGGCCGCGGCACCTGCCCCTGTAGTTACTGTCCCAC TTGCGTTGCCCAAGGCCGGGGGAGTGGAGGATACCAAGTACTACGTGGAT GTGGACCCGAATGTGACCCAGGGGGCGTTCGCCGGAAGGGATGTCGGGGG GGATGATGGGGGAAGAGTGCCTCAGGCGGGCACGGCATTGGAGATGATGA TTCAGAGACCTCCGATTGCTCCGGGTACGGTGGCGGAGTCGGGATCTTGG GCCCCGAACAAGAAAAGCGCGGACTATGCCCTGATGTTTCAGAACGCCTC CATTGCCATGGCGGTGGCGAGCCTGGACGGGAATTTCGTCGATTGCAATG GGGCGTTTTCCATCATCTCCGGGTATAATAACAGGGAGGTGCTGCAGCGG TCGGTGTTTGACTTGACCCCCGCGGAGGACTGCCAGGAATTGATGTCTAT CGTGGGGAAAATGATGGAGAGTCCTGCGGAGAGCGCGAAACACTTTTGGA AGCGCTGTTGTTTCGAGAATCGTGACTGCCATTGTTTCGTGAGCATGTGG CTGGTGCGGAAAGCTTCCGGAGAGCCGGTGTACTTCCAGTGTGCTGTCTT GCCCTTGGAGGACTACCCCATGTCCAGCAAGTCTGTCACGTATGACGCAA GCTCGCAGGGGAAAGAATTGGCGGAGAGGGGGGAAGGGGAAGACGGAGGG ACGGTGCATGCGATTGAGGGCCAGGAGGAGGTGCAGGTGAGTGAGGCAAA TACCCTGTTGCAGCCGGAATTTCGCTGTGGGGAAGGAGAAGGAGAAGCAG CAATAGGAAGAGGTGGAGGAGGACGGGAGGGCGATTTACAGTTTGAGTTG CCGGCGCCGCGGTCGTCACAGTTCACAGAGAAAGGATTGGCCGTGGGAGC GTCTGGGGAATGTCATGATAGGCCGTCGCCGTCCTCGTCGTCATGAATGA GTGAGATCGATTCTCTCTTTGGTGCCCTTGGGGACACAGGCGACGTTGAC GCAGATCTGAGCATACTGGAGGCCCTCTGCGGGCTTGAAGGTATCGATGC CTCCGCTGCTGCGGCTGCAGCCGTGGAGGAGGAACAGTCGGACGAAGACG AGGAGGACTCCTTCGATGGGGACGGACAGCCGCGTAAGAAGCGGGCACGT CGCACCCGTTCAGAATTGAATGAAGTGGAGAAGCAACGCACCCGGCGAAT CAATGAGCAAATCCAATCTTTGCGGGCTTTGCTGGAAGCCTCGGGGCTGA ATACCAAGAAAGATAAATTCTCCATTCTGAAGAACACTACCGAGTACCTG AAAAAGTTGAAACTCCTCCTCAACAAATCGCAAGCTCAAATCCAGGCTTT AGTCGCCAGCCGCCGAGTCGCGGCTGCAGCAAATGCAGCGTCAGCAGCAG CAGGAGGGGGCATGGCCGCGGCACCTGCCCCTGTAGTTACTGTCCCACTT GCGTTGCCCAAGGCCGGGGGAGTGGAGGATACCAAGTACTACGTGGATGT GGACCCGAATGTGACCCAGGGGGCGTTCGCCGGAAGGGATGTCGGGGGGG ATGATGGGGGAAGAGTGCCTCAGGCGGGCACGGCATTGGAGATGATGATT CAGAGACCTCCGATTGCTCCGGGTACGGTGGCGGAGTCGGGATCTTGGGC CCCGAACAAGAAAAGCGCGGACTATGCCCTGATGTTTCAGAACGCCTCCA TTGCCATGGCGGTGGCGAGCCTGGACGGGAATTTCGTCGATTGCAATGGG GCGTTTTCCATCATCTCCGGGTATAATAACAGGGAGGTGCTGCAGCGGTC GGTGTTTGACTTGACCCCCGCGGAGGACTGCCAGGAATTGATGTCTATCG TGGGGAAAATGATGGAGAGTCCTGCGGAGAGCGCGAAACACTTTTGGAAG CGCTGTTGTTTCGAGAATCGTGACTGCCATTGTTTCGTGAGCATGTGGCT GGTGCGGAAAGCTTCCGGAGAGCCGGTGTACTTCCAGTGTGCTGTCTTGC CCTTGGAGGACTACCCCATGTCCAGCAAGTCTGTCACGTATGACGCAAGC TCGCAGGGGAAAGAATTGGCGGAGAGGGGGGAAGGGGAAGACGGAGGGAC GGTGCATGCGATTGAGGGCCAGGAGGAGGTGCAGGTGAGTGAGGCAAATA CCCTGTTGCAGCCGGAATTTCGCTGTGGGGAAGGAGAAGGAGAAGCAGCA ATAGGAAGAGGTGGAGGAGGACGGGAGGGCGATTTACAGTTTGAGTTGCC GGCGCCGCGGTCGTCACAGTTCACAGAGAAAGGATTGGCCGTGGGAGCGT CTGGGGAATGTCATGATAGGCCGTCGCCGTCCTCGTCGTCATGA back to top
|