jgi.p|Nanoce1779_2|588122, mRNA_4856 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588122
Unique NamemRNA_4856
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length987
Alignment locationscaffold_9:786283..787269 -

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Properties
Property NameValue
TranscriptId588208
TrackFilteredModels2
ProteinId588122
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:786283..787269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588122gene_4856Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588122mRNA_4856-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4856CDS_4856Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4856 ID=mRNA_4856|Name=jgi.p|Nanoce1779_2|588122|organism=Nannochloropsis oceanica|type=mRNA|length=987bp
AAAAAACAGGGGTTTTCAACCTCCCCCCTCCCTCCTCCGCAGAGTACACC
CTCGCCCTCTTCCCCTGTATCACCAGTATTCATGAAGCAAGCAATAAAAC
AAGAGAAGAAGCGCAAGCCTTCTACCGATGTCTCTATCTCTCTATCATCA
CAATTCAAGAAGCACGTGCAGCGAGAGTACAAGCGTGCAGCAATTTCTTC
ATGCCCAAAACACCACCACAAGTACCTCGAAGAGACTATTGAAAATGCCC
GGAGGGCACGCGCCAAGGGCGATCATCCTTTTGGTTGTGTTCTTGTGAAT
AATGATAGCAAGCAAACGGTAATTGCAGGCGGAAACAGCGTGGTTACCTC
TGGCGATGCCACGTGCCACTCGGAGATGAACGTGGTAAGGATGGCCTGTC
AAAGTTACACCGAGGCGTTTCTGCGTCACTGCACTCTCTACGTATCCGCC
GAGCCCTGCCCGATGTGTGCCGGAGCAATCTATTGGAGCGGCATTCCGAG
GCTAGTGTACGCACTACCTGAATATGAGCTCAAGGAAATTGCTAAAGGGG
CAACATTTGACTTGCCGTGTCGTGAGGTTTTTGAACGTGGAACGCTGGAG
ATGAAGGTGGAGGGACCGTATGAGGTGGAGGGGATGAGAGGGGTACATGA
CGGGTTTTGGATTCAGGACATGGGTCATATAAATGGACCAAAGCCGGCAA
GGGAGGAAAGGGAGGGAGATGAGGAAGAGGAGGAGGGGAGAAAGGGATGG
ATAGGTCGAGGAGGAAGGAGAGGGAAGGAGGAAGGCGATATGTAGGGGTC
GGAACGTGGTTCCCACGAGGTGGGAGACGTGTGAGACCATGATGGAAGGT
ATTCAAAGGCGTGTGCAAGACGGCAGGGCGGGAGATAGCCGCATGGATCA
CAGACCGTTTCACTCAAATCCTCTCTTTCTCTTCAGTTGGAGGGTACGAT
AAAAATCCAAAAAAAGCAATGTGAACACACAATATTA
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protein sequence of jgi.p|Nanoce1779_2|588122

>mRNA_4856-protein ID=mRNA_4856-protein|Name=jgi.p|Nanoce1779_2|588122|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MKQAIKQEKKRKPSTDVSISLSSQFKKHVQREYKRAAISSCPKHHHKYLE
ETIENARRARAKGDHPFGCVLVNNDSKQTVIAGGNSVVTSGDATCHSEMN
VVRMACQSYTEAFLRHCTLYVSAEPCPMCAGAIYWSGIPRLVYALPEYEL
KEIAKGATFDLPCREVFERGTLEMKVEGPYEVEGMRGVHDGFWIQDMGHI
NGPKPAREEREGDEEEEEGRKGWIGRGGRRGKEEGDM*
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mRNA from alignment at scaffold_9:786283..787269-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4856 ID=mRNA_4856|Name=jgi.p|Nanoce1779_2|588122|organism=Nannochloropsis oceanica|type=mRNA|length=987bp|location=Sequence derived from alignment at scaffold_9:786283..787269- (Nannochloropsis oceanica)
AAAAAACAGGGGTTTTCAACCTCCCCCCTCCCTCCTCCGCAGAGTACACC
CTCGCCCTCTTCCCCTGTATCACCAGTATTCATGAAGCAAGCAATAAAAC
AAGAGAAGAAGCGCAAGCCTTCTACCGATGTCTCTATCTCTCTATCATCA
CAATTCAAGAAGCACGTGCAGCGAGAGTACAAGCGTGCAGCAATTTCTTC
ATGCCCAAAACACCACCACAAGTACCTCGAAGAGACTATTGAAAATGCCC
GGAGGGCACGCGCCAAGGGCGATCATCCTTTTGGTTGTGTTCTTGTGAAT
AATGATAGCAAGCAAACGGTAATTGCAGGCGGAAACAGCGTGGTTACCTC
TGGCGATGCCACGTGCCACTCGGAGATGAACGTGGTAAGGATGGCCTGTC
AAAGTTACACCGAGGCGTTTCTGCGTCACTGCACTCTCTACGTATCCGCC
GAGCCCTGCCCGATGTGTGCCGGAGCAATCTATTGGAGCGGCATTCCGAG
GCTAGTGTACGCACTACCTGAATATGAGCTCAAGGAAATTGCTAAAGGGG
CAACATTTGACTTGCCGTGTCGTGAGGTTTTTGAACGTGGAACGCTGGAG
ATGAAGGTGGAGGGACCGTATGAGGTGGAGGGGATGAGAGGGGTACATGA
CGGGTTTTGGATTCAGGACATGGGTCATATAAATGGACCAAAGCCGGCAA
GGGAGGAAAGGGAGGGAGATGAGGAAGAGGAGGAGGGGAGAAAGGGATGG
ATAGGTCGAGGAGGAAGGAGAGGGAAGGAGGAAGGCGATATGTAGGGGTC
GGAACGTGGTTCCCACGAGGTGGGAGACGTGTGAGACCATGATGGAAGGT
ATTCAAAGGCGTGTGCAAGACGGCAGGGCGGGAGATAGCCGCATGGATCA
CAGACCGTTTCACTCAAATCCTCTCTTTCTCTTCAGTTGGAGGGTACGAT
AAAAATCCAAAAAAAGCAATGTGAACACACAATATTA
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Coding sequence (CDS) from alignment at scaffold_9:786283..787269-

>mRNA_4856 ID=mRNA_4856|Name=jgi.p|Nanoce1779_2|588122|organism=Nannochloropsis oceanica|type=CDS|length=714bp|location=Sequence derived from alignment at scaffold_9:786283..787269- (Nannochloropsis oceanica)
ATGAAGCAAGCAATAAAACAAGAGAAGAAGCGCAAGCCTTCTACCGATGT
CTCTATCTCTCTATCATCACAATTCAAGAAGCACGTGCAGCGAGAGTACA
AGCGTGCAGCAATTTCTTCATGCCCAAAACACCACCACAAGTACCTCGAA
GAGACTATTGAAAATGCCCGGAGGGCACGCGCCAAGGGCGATCATCCTTT
TGGTTGTGTTCTTGTGAATAATGATAGCAAGCAAACGGTAATTGCAGGCG
GAAACAGCGTGGTTACCTCTGGCGATGCCACGTGCCACTCGGAGATGAAC
GTGGTAAGGATGGCCTGTCAAAGTTACACCGAGGCGTTTCTGCGTCACTG
CACTCTCTACGTATCCGCCGAGCCCTGCCCGATGTGTGCCGGAGCAATCT
ATTGGAGCGGCATTCCGAGGCTAGTGTACGCACTACCTGAATATGAGCTC
AAGGAAATTGCTAAAGGGGCAACATTTGACTTGCCGTGTCGTGAGGTTTT
TGAACGTGGAACGCTGGAGATGAAGGTGGAGGGACCGTATGAGGTGGAGG
GGATGAGAGGGGTACATGACGGGTTTTGGATTCAGGACATGGGTCATATA
AATGGACCAAAGCCGGCAAGGGAGGAAAGGGAGGGAGATGAGGAAGAGGA
GGAGGGGAGAAAGGGATGGATAGGTCGAGGAGGAAGGAGAGGGAAGGAGG
AAGGCGATATGTAG
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Synonyms
Publications