jgi.p|Nanoce1779_2|588122, gene_4856 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588122
Unique Namegene_4856
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_9:786283..787269 -

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Properties
Property NameValue
TranscriptId588208
ProteinId588122
Product nameCytidine deaminase-like protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:786283..787269 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003933GTP cyclohydrolase activity
GO:0008251tRNA-specific adenosine deaminase activity
GO:00437232,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate deaminase activity
GO:0043829tRNA-specific adenosine-37 deaminase activity
GO:0003824catalytic activity
GO:0008270zinc ion binding
GO:0016787hydrolase activity
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL006ncniL006Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588122mRNA_4856-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588122mRNA_4856Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|588122

>mRNA_4856-protein ID=mRNA_4856-protein|Name=jgi.p|Nanoce1779_2|588122|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MKQAIKQEKKRKPSTDVSISLSSQFKKHVQREYKRAAISSCPKHHHKYLE
ETIENARRARAKGDHPFGCVLVNNDSKQTVIAGGNSVVTSGDATCHSEMN
VVRMACQSYTEAFLRHCTLYVSAEPCPMCAGAIYWSGIPRLVYALPEYEL
KEIAKGATFDLPCREVFERGTLEMKVEGPYEVEGMRGVHDGFWIQDMGHI
NGPKPAREEREGDEEEEEGRKGWIGRGGRRGKEEGDM*
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Synonyms
Publications