jgi.p|Nanoce1779_2|588063, mRNA_4839 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588063
Unique Name	mRNA_4839
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2172
Alignment location	scaffold_9:748035..750650 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	588149
Track	FilteredModels2
ProteinId	588063

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:748035..750650 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588063	gene_4839	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588063	mRNA_4839-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4839	CDS_4839	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:748035..750650+
coding sequence from alignment at scaffold_9:748035..750650+

mRNA sequence

>mRNA_4839 ID=mRNA_4839|Name=jgi.p|Nanoce1779_2|588063|organism=Nannochloropsis oceanica|type=mRNA|length=2172bp
AGAGTCGTCCTCGCTCGCGGCAAGGATGATGAAGTGCTGCAGCCTCCTCA
TGGCCGTGGCCATGCCCCTGTTTGCCCAAGGCTTTATGCCCGCTGCTCCA
GCTGGCTCTTGGCTGGGCACCCGCGGCCTGACCCACCGTTCCGCCTCCTC
TATCGCCGCCACCACCTCCCGGCAATCTTCCCGGCAGACCCTTCGCGCAT
CAGCCGCCGCGGAATTCGACACCAAGATTTTTAAGAAGACTCCCATCAGC
TTAGGGGGAACGAACGAGGAGATCGTGAAGGGTGGCCGTGATTTGTTTAC
CTTGTTACCCAAAGCCTTTGAGGGAATCAAGCAGATCGGCATTATCGGTT
GGGGGTCTCAGGCCCCCGCGCAGGGGCAAAATTTGAAGGAATCTCTGGCA
GGGATGGGTGTGAATGTGAAGGTGGGGTTGAGGAAGAGCTCACCGTCGTG
GAAGCTGGCGGAGAGCGTGGGGTTCACGGAGAAGGAGGGGACATTGGGCG
AGATGTTCGACGTCATCAAGGAGTCGGATATGGTCATCCTCCTCATTTCG
GACGCAGCGCAGGTAAAACTGCACAAAGAGATTTTTGCGGCGTTGAAGCC
GGGGGCGACGTTGGGGTTGTCCCACGGGTTCTTACTCGGGTACCTGGAGA
GCATCGGCTCCGATTTCCCCAAGGACGTGAATGTGATTGCAGTGTGCCCT
AAGGGAATGGGCCCCTCCGTGCGACGGCTGTACGAGCAGGGAAAGACGGT
GAACGGTGCTGGGATCAACAGCTCTTTTGCCGTTCACAGGGACGCGAACG
GCAAGGCGACGGAGCTGGCTTTGGGGTGGGGAATTGCCATCGGCAGCCCG
TTTTTGTTCAAGACGACTATGACGGAGGAGTACAAGAGTGATATCTACGG
GGAGCGCGGGATTCTCCTCGGGGCGGTGCATGGCATCATTGAAACCTTGT
TCAGGAGATATGTGGCGCAGGGCATGAGCCCGGAGCAGGCATTCAAGGAG
AGTGCCGAGAGCATCACGGGGCCTATTACCAAGATCATCTCCAAGGAGGG
AGTGTTGAAGCTGTACAACTCTCTGTCGGGCGCGGACAAGGAAACATTCA
ACAAGGCGTACTCGGCTTCGTACAAGCCGGCGCGCGAGATTCTGCAGGAG
ATTTATGACGAGGTGGCGAGTGGGAACGAGATTCGTTCAGTCGTGATGCA
CTCGGAGCGACTGTCGGAGTTTCCCGTGGGGAAGATCGATGGCACCTACA
CGTGGCAGGTGGGAGAGAAGGTGCGTGCGGCACGAAAGGAGGAGGAGATT
CCCCTGAATGCCTTCACGGCAGGCGTGTACGTGGCGACGATGATGGCACA
GATCGACGTCTTGCGAAAGGCCGGGCATTCCTTCTCGGAGATTGTCAACG
AGTCGGTCATTGAGGCGGTTGACTCTCTGTGCCCTTATATGCACTACAAG
GGCGTGGCCTTTATGGTGGACAACTGCTCCATCACCGCCCGCCTGGGCTC
CCGTAAGTGGGCCCCTCGTTTTGATTACATTTTGGACCAGCTTGCGTACA
CGGCCATTGATGCCGGCGCACCCGTCAACCAGGAGCTGATTGGCGACTTC
CTGAAGAACCCCGTGCACGATGCAATCTCCGTCTGCTGCTCCCTGCGCCC
GCCTGTGGATATTTCCTGCGCGGCCCCGTCGACGGTGAAGGAGATCGCGA
TGACTTAAATGGGGGATGAGGAAGGAGGGGAGGGAGGAGAAGGAAGGAAC
TGCCCTGTCTTTTGGAGGGCGATAGCCTCGGAAGGAGGTTGTTCTCGCAG
TGTGTACATGATTGCGTGTGAGAGATTTGGAGTGATGGAGGAGGTAGAAG
GCTTGGAAGACGATTGAAGGGGCCACGAAACGCCGGTCTCACCCTTTTGT
GTGATGCTGGGTGATTGGGAGGTGGGAGGAGTTAAGACACCAAGAGAAGA
TAAGAGATGATGGTGGTAGAACATAAATTGACCACTCTTCCTTGATCTAG
CGAGTGCTCTGAACGAAAAGGAAAGGCTCCCCAACCGAGAGCAAGCAAGC
AATATTGGAAAAAGCCAGGGTGGAGGAAAGATGGGGAGGTTCATGGGAAT
CGACGGGGGAGATTAGAATATGCTGTCGTCGAAACAAAGAAACAAAGAAA
AAAAGAAAGCGAAATCGAAAAA

protein sequence of jgi.p|Nanoce1779_2|588063

>mRNA_4839-protein ID=mRNA_4839-protein|Name=jgi.p|Nanoce1779_2|588063|organism=Nannochloropsis oceanica|type=polypeptide|length=561bp
MMKCCSLLMAVAMPLFAQGFMPAAPAGSWLGTRGLTHRSASSIAATTSRQ
SSRQTLRASAAAEFDTKIFKKTPISLGGTNEEIVKGGRDLFTLLPKAFEG
IKQIGIIGWGSQAPAQGQNLKESLAGMGVNVKVGLRKSSPSWKLAESVGF
TEKEGTLGEMFDVIKESDMVILLISDAAQVKLHKEIFAALKPGATLGLSH
GFLLGYLESIGSDFPKDVNVIAVCPKGMGPSVRRLYEQGKTVNGAGINSS
FAVHRDANGKATELALGWGIAIGSPFLFKTTMTEEYKSDIYGERGILLGA
VHGIIETLFRRYVAQGMSPEQAFKESAESITGPITKIISKEGVLKLYNSL
SGADKETFNKAYSASYKPAREILQEIYDEVASGNEIRSVVMHSERLSEFP
VGKIDGTYTWQVGEKVRAARKEEEIPLNAFTAGVYVATMMAQIDVLRKAG
HSFSEIVNESVIEAVDSLCPYMHYKGVAFMVDNCSITARLGSRKWAPRFD
YILDQLAYTAIDAGAPVNQELIGDFLKNPVHDAISVCCSLRPPVDISCAA
PSTVKEIAMT*

mRNA from alignment at scaffold_9:748035..750650+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4839 ID=mRNA_4839|Name=jgi.p|Nanoce1779_2|588063|organism=Nannochloropsis oceanica|type=mRNA|length=2616bp|location=Sequence derived from alignment at scaffold_9:748035..750650+ (Nannochloropsis oceanica)
AGAGTCGTCCTCGCTCGCGGCAAGGATGATGAAGTGCTGCAGCCTCCTCA
TGGCCGTGGCCATGCCCCTGTTTGCCCAAGGCTTTATGCCCGCTGCTCCA
GCTGGTACGTTGCGGTAAAGATTGATTCCAGGGGAAGAGGGGGGAGAGGG
GGAAGAGGAAGAGATATATGTGTGTACATATATGTACATGCGTGAGCTGG
TGTGCGCATGTGGAGGGGGAACGGGAGAGCACGCCGGATGCCCCCTTGAA
TGCGTTCCGTCAATGTTTGAGGACATGTTCATTCTAATGGTGTGTGACTT
GGTGCTTCCTGCCTGTGTGTGTGTGGTGTGCATAGGTACCTGCGAATTTG
CGTGCTCGGGGGAACGCGTCGTAAGTCTTATCGCGTTCTTCTAAATAGAT
AGCTCCTACTCCTCACCCTCCCCGTCACTGGCATGCCATCCTTCTTTCCG
CCGTTACCCTTCCTTCACTCTTACCATTTTACCTTCTAACAATTGTCTAA
CTTTCTTGTCCACCCTTCATTGTGGCCCCTCCCCGACCACCTTCACAGGC
TCTTGGCTGGGCACCCGCGGCCTGACCCACCGTTCCGCCTCCTCTATCGC
CGCCACCACCTCCCGGCAATCTTCCCGGCAGACCCTTCGCGCATCAGCCG
CCGCGGAATTCGACACCAAGATTTTTAAGAAGACTCCCATCAGCTTAGGG
GGAACGAACGAGGAGATCGTGAAGGGTGGCCGTGATTTGTTTACCTTGTT
ACCCAAAGCCTTTGAGGGAATCAAGCAGATCGGCATTATCGGTTGGGGGT
CTCAGGCCCCCGCGCAGGGGCAAAATTTGAAGGAATCTCTGGCAGGGATG
GGTGTGAATGTGAAGGTGGGGTTGAGGAAGAGCTCACCGTCGTGGAAGCT
GGCGGAGAGCGTGGGGTTCACGGAGAAGGAGGGGACATTGGGCGAGATGT
TCGACGTCATCAAGGAGTCGGATATGGTCATCCTCCTCATTTCGGACGCA
GCGCAGGTAAAACTGCACAAAGAGATTTTTGCGGCGTTGAAGCCGGGGGC
GACGTTGGGGTTGTCCCACGGGTTCTTACTCGGGTACCTGGAGAGCATCG
GCTCCGATTTCCCCAAGGACGTGAATGTGATTGCAGTGTGCCCTAAGGGA
ATGGGCCCCTCCGTGCGACGGCTGTACGAGCAGGGAAAGACGGTGAACGG
TGCTGGGATCAACAGCTCTTTTGCCGTTCACAGGGACGCGAACGGCAAGG
CGACGGAGCTGGCTTTGGGGTGGGGAATTGCCATCGGCAGCCCGTTTTTG
TTCAAGACGACTATGACGGAGGAGTACAAGAGTGATATCTACGGGGAGCG
CGGGATTCTCCTCGGGGCGGTGCATGGCATCATTGAAACCTTGTTCAGGA
GATATGTGGCGCAGGGCATGAGCCCGGAGCAGGCATTCAAGGAGAGTGCC
GAGAGCATCACGGGGCCTATTACCAAGATCATCTCCAAGGAGGGAGTGTT
GAAGCTGTACAACTCTCTGTCGGGCGCGGACAAGGAAACATTCAACAAGG
CGTACTCGGCTTCGTACAAGCCGGCGCGCGAGATTCTGCAGGAGATTTAT
GACGAGGTGGCGAGTGGGAACGAGATTCGTTCAGTCGTGATGCACTCGGA
GCGACTGTCGGAGTTTCCCGTGGGGAAGATCGATGGCACCTACACGTGGC
AGGTGGGAGAGAAGGTGCGTGCGGCACGAAAGGAGGAGGAGATTCCCCTG
AATGCCTTCACGGCAGGCGTGTACGTGGCGACGATGATGGCACAGATCGA
CGTCTTGCGAAAGGCCGGGCATTCCTTCTCGGAGATTGTCAACGAGTCGG
TCATTGAGGCGGTTGACTCTCTGTGCCCTTATATGCACTACAAGGGCGTG
GCCTTTATGGTGGACAACTGCTCCATCACCGCCCGCCTGGGCTCCCGTAA
GTGGGCCCCTCGTTTTGATTACATTTTGGACCAGCTTGCGTACACGGCCA
TTGATGCCGGCGCACCCGTCAACCAGGAGCTGATTGGCGACTTCCTGAAG
AACCCCGTGCACGATGCAATCTCCGTCTGCTGCTCCCTGCGCCCGCCTGT
GGATATTTCCTGCGCGGCCCCGTCGACGGTGAAGGAGATCGCGATGACTT
AAATGGGGGATGAGGAAGGAGGGGAGGGAGGAGAAGGAAGGAACTGCCCT
GTCTTTTGGAGGGCGATAGCCTCGGAAGGAGGTTGTTCTCGCAGTGTGTA
CATGATTGCGTGTGAGAGATTTGGAGTGATGGAGGAGGTAGAAGGCTTGG
AAGACGATTGAAGGGGCCACGAAACGCCGGTCTCACCCTTTTGTGTGATG
CTGGGTGATTGGGAGGTGGGAGGAGTTAAGACACCAAGAGAAGATAAGAG
ATGATGGTGGTAGAACATAAATTGACCACTCTTCCTTGATCTAGCGAGTG
CTCTGAACGAAAAGGAAAGGCTCCCCAACCGAGAGCAAGCAAGCAATATT
GGAAAAAGCCAGGGTGGAGGAAAGATGGGGAGGTTCATGGGAATCGACGG
GGGAGATTAGAATATGCTGTCGTCGAAACAAAGAAACAAAGAAAAAAAGA
AAGCGAAATCGAAAAA

Coding sequence (CDS) from alignment at scaffold_9:748035..750650+

>mRNA_4839 ID=mRNA_4839|Name=jgi.p|Nanoce1779_2|588063|organism=Nannochloropsis oceanica|type=CDS|length=3366bp|location=Sequence derived from alignment at scaffold_9:748035..750650+ (Nannochloropsis oceanica)
ATGATGAAGTGCTGCAGCCTCCTCATGGCCGTGGCCATGCCCCTGTTTGC
CCAAGGCTTTATGCCCGCTGCTCCAGCTGGCTCTTGGCTGGGCACCCGCG
GCCTGACCCACCGTTCCGCCTCCTCTATCGCCGCCACCACCTCCCGGCAA
TCTTCCCGGCAGACCCTTCGCGCATCAGCCGCCGCGGAATTCGACACCAA
GATTTTTAAGAAGACTCCCATCAGCTTAGGGGGAACGAACGAGGAGATCG
TGAAGGGTGGCCGTGATTTGTTTACCTTGTTACCCAAAGCCTTTGAGGGA
ATCAAGCAGATCGGCATTATCGGTTGGGGGTCTCAGGCCCCCGCGCAGGG
GCAAAATTTGAAGGAATCTCTGGCAGGGATGGGTGTGAATGTGAAGGTGG
GGTTGAGGAAGAGCTCACCGTCGTGGAAGCTGGCGGAGAGCGTGGGGTTC
ACGGAGAAGGAGGGGACATTGGGCGAGATGTTCGACGTCATCAAGGAGTC
GGATATGGTCATCCTCCTCATTTCGGACGCAGCGCAGGTAAAACTGCACA
AAGAGATTTTTGCGGCGTTGAAGCCGGGGGCGACGTTGGGGTTGTCCCAC
GGGTTCTTACTCGGGTACCTGGAGAGCATCGGCTCCGATTTCCCCAAGGA
CGTGAATGTGATTGCAGTGTGCCCTAAGGGAATGGGCCCCTCCGTGCGAC
GGCTGTACGAGCAGGGAAAGACGGTGAACGGTGCTGGGATCAACAGCTCT
TTTGCCGTTCACAGGGACGCGAACGGCAAGGCGACGGAGCTGGCTTTGGG
GTGGGGAATTGCCATCGGCAGCCCGTTTTTGTTCAAGACGACTATGACGG
AGGAGTACAAGAGTGATATCTACGGGGAGCGCGGGATTCTCCTCGGGGCG
GTGCATGGCATCATTGAAACCTTGTTCAGGAGATATGTGGCGCAGGGCAT
GAGCCCGGAGCAGGCATTCAAGGAGAGTGCCGAGAGCATCACGGGGCCTA
TTACCAAGATCATCTCCAAGGAGGGAGTGTTGAAGCTGTACAACTCTCTG
TCGGGCGCGGACAAGGAAACATTCAACAAGGCGTACTCGGCTTCGTACAA
GCCGGCGCGCGAGATTCTGCAGGAGATTTATGACGAGGTGGCGAGTGGGA
ACGAGATTCGTTCAGTCGTGATGCACTCGGAGCGACTGTCGGAGTTTCCC
GTGGGGAAGATCGATGGCACCTACACGTGGCAGGTGGGAGAGAAGGTGCG
TGCGGCACGAAAGGAGGAGGAGATTCCCCTGAATGCCTTCACGGCAGGCG
TGTACGTGGCGACGATGATGGCACAGATCGACGTCTTGCGAAAGGCCGGG
CATTCCTTCTCGGAGATTGTCAACGAGTCGGTCATTGAGGCGGTTGACTC
TCTGTGCCCTTATATGCACTACAAGGGCGTGGCCTTTATGGTGGACAACT
GCTCCATCACCGCCCGCCTGGGCTCCCGTAAGTGGGCCCCTCGTTTTGAT
TACATTTTGGACCAGCTTGCGTACACGGCCATTGATGCCGGCGCACCCGT
CAACCAGGAGCTGATTGGCGACTTCCTGAAGAACCCCGTGCACGATGCAA
TCTCCGTCTGCTGCTCCCTGCGCCCGCCTGTGGATATTTCCTGCGCGGCC
CCGTCGACGGTGAAGGAGATCGCGATGACTTAAATGATGAAGTGCTGCAG
CCTCCTCATGGCCGTGGCCATGCCCCTGTTTGCCCAAGGCTTTATGCCCG
CTGCTCCAGCTGGCTCTTGGCTGGGCACCCGCGGCCTGACCCACCGTTCC
GCCTCCTCTATCGCCGCCACCACCTCCCGGCAATCTTCCCGGCAGACCCT
TCGCGCATCAGCCGCCGCGGAATTCGACACCAAGATTTTTAAGAAGACTC
CCATCAGCTTAGGGGGAACGAACGAGGAGATCGTGAAGGGTGGCCGTGAT
TTGTTTACCTTGTTACCCAAAGCCTTTGAGGGAATCAAGCAGATCGGCAT
TATCGGTTGGGGGTCTCAGGCCCCCGCGCAGGGGCAAAATTTGAAGGAAT
CTCTGGCAGGGATGGGTGTGAATGTGAAGGTGGGGTTGAGGAAGAGCTCA
CCGTCGTGGAAGCTGGCGGAGAGCGTGGGGTTCACGGAGAAGGAGGGGAC
ATTGGGCGAGATGTTCGACGTCATCAAGGAGTCGGATATGGTCATCCTCC
TCATTTCGGACGCAGCGCAGGTAAAACTGCACAAAGAGATTTTTGCGGCG
TTGAAGCCGGGGGCGACGTTGGGGTTGTCCCACGGGTTCTTACTCGGGTA
CCTGGAGAGCATCGGCTCCGATTTCCCCAAGGACGTGAATGTGATTGCAG
TGTGCCCTAAGGGAATGGGCCCCTCCGTGCGACGGCTGTACGAGCAGGGA
AAGACGGTGAACGGTGCTGGGATCAACAGCTCTTTTGCCGTTCACAGGGA
CGCGAACGGCAAGGCGACGGAGCTGGCTTTGGGGTGGGGAATTGCCATCG
GCAGCCCGTTTTTGTTCAAGACGACTATGACGGAGGAGTACAAGAGTGAT
ATCTACGGGGAGCGCGGGATTCTCCTCGGGGCGGTGCATGGCATCATTGA
AACCTTGTTCAGGAGATATGTGGCGCAGGGCATGAGCCCGGAGCAGGCAT
TCAAGGAGAGTGCCGAGAGCATCACGGGGCCTATTACCAAGATCATCTCC
AAGGAGGGAGTGTTGAAGCTGTACAACTCTCTGTCGGGCGCGGACAAGGA
AACATTCAACAAGGCGTACTCGGCTTCGTACAAGCCGGCGCGCGAGATTC
TGCAGGAGATTTATGACGAGGTGGCGAGTGGGAACGAGATTCGTTCAGTC
GTGATGCACTCGGAGCGACTGTCGGAGTTTCCCGTGGGGAAGATCGATGG
CACCTACACGTGGCAGGTGGGAGAGAAGGTGCGTGCGGCACGAAAGGAGG
AGGAGATTCCCCTGAATGCCTTCACGGCAGGCGTGTACGTGGCGACGATG
ATGGCACAGATCGACGTCTTGCGAAAGGCCGGGCATTCCTTCTCGGAGAT
TGTCAACGAGTCGGTCATTGAGGCGGTTGACTCTCTGTGCCCTTATATGC
ACTACAAGGGCGTGGCCTTTATGGTGGACAACTGCTCCATCACCGCCCGC
CTGGGCTCCCGTAAGTGGGCCCCTCGTTTTGATTACATTTTGGACCAGCT
TGCGTACACGGCCATTGATGCCGGCGCACCCGTCAACCAGGAGCTGATTG
GCGACTTCCTGAAGAACCCCGTGCACGATGCAATCTCCGTCTGCTGCTCC
CTGCGCCCGCCTGTGGATATTTCCTGCGCGGCCCCGTCGACGGTGAAGGA
GATCGCGATGACTTAA

Synonyms

Publications