jgi.p|Nanoce1779_2|588063, gene_4839 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588063
Unique Namegene_4839
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_9:748035..750650 +

Link to JBrowse

Properties
Property NameValue
TranscriptId588149
ProteinId588063
Product nameketol-acid reductoisomerase
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:748035..750650 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:0004455ketol-acid reductoisomerase activity
Vocabulary: Biological Process
TermDefinition
GO:0009082branched-chain amino acid biosynthetic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL006ncniL006Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02780NO15G02780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588063mRNA_4839-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588063mRNA_4839Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|588063

>mRNA_4839-protein ID=mRNA_4839-protein|Name=jgi.p|Nanoce1779_2|588063|organism=Nannochloropsis oceanica|type=polypeptide|length=561bp
MMKCCSLLMAVAMPLFAQGFMPAAPAGSWLGTRGLTHRSASSIAATTSRQ
SSRQTLRASAAAEFDTKIFKKTPISLGGTNEEIVKGGRDLFTLLPKAFEG
IKQIGIIGWGSQAPAQGQNLKESLAGMGVNVKVGLRKSSPSWKLAESVGF
TEKEGTLGEMFDVIKESDMVILLISDAAQVKLHKEIFAALKPGATLGLSH
GFLLGYLESIGSDFPKDVNVIAVCPKGMGPSVRRLYEQGKTVNGAGINSS
FAVHRDANGKATELALGWGIAIGSPFLFKTTMTEEYKSDIYGERGILLGA
VHGIIETLFRRYVAQGMSPEQAFKESAESITGPITKIISKEGVLKLYNSL
SGADKETFNKAYSASYKPAREILQEIYDEVASGNEIRSVVMHSERLSEFP
VGKIDGTYTWQVGEKVRAARKEEEIPLNAFTAGVYVATMMAQIDVLRKAG
HSFSEIVNESVIEAVDSLCPYMHYKGVAFMVDNCSITARLGSRKWAPRFD
YILDQLAYTAIDAGAPVNQELIGDFLKNPVHDAISVCCSLRPPVDISCAA
PSTVKEIAMT*
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Synonyms
Publications