jgi.p|Nanoce1779_2|554710, mRNA_4773 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|554710
Unique Name	mRNA_4773
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2008
Alignment location	scaffold_9:604768..607130 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	554796
Track	FilteredModels2
ProteinId	554710

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:604768..607130 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|554710	gene_4773	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|554710	mRNA_4773-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4773	CDS_4773	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:604768..607130+
coding sequence from alignment at scaffold_9:604768..607130+

mRNA sequence

>mRNA_4773 ID=mRNA_4773|Name=jgi.p|Nanoce1779_2|554710|organism=Nannochloropsis oceanica|type=mRNA|length=2008bp
AAAGACAAAAAGGAGGCCCTTGAATTTTCTTTAGCCAATTTCCTTGTCCA
CCACACAAGCCTTCCTTCCGTCGATAAGAACTCATGCCTAATTGGTGCCC
AGTGGCCGCGTGAAATCACCCTACGAGTGCATTTACCCACTACATGGGGC
TGCTTTTTGGTTTGTGGGCCATGACGACTCTGTACGGCATTTTGCGGCCA
AGGTGCTGGTCATCTATCACGGCCCAGCAGCACTCGCAAATGTATTGAAG
AGCGGGAGGCGCTCAAATGCTCCGTGAAAGCTTGGTTCCGACATCGATGG
GGAGATTTAGCTGCACAGAACCAAAAGAGATGGGAGATGATGGCATCCTC
CGTCATCGAAATGATCCCCGGATCACTCGGTGCACCAGACTAGAGCCCCG
ATATGCTTCTGTCCGGTGACTACATGAGACATGTACATGTAGACTACCGC
ATTCAAAGCCTCCTCCATCCACATCCATAGACAACCCAAGGCCTCTCTAA
GGCTTCTTCCTTCCGTCGCCCCACCTCGCAATAGCCATAATCAACGTAAT
CAGCATCATCACGCCCCCACTTCTGAAGCCATGGCCTACAGCACGAGCAG
CGGCAAGAACAACAAAAGAACGGAAATGCAGGTGTATATGGACATTAAGA
TTGGGCCTCGATTTGCCGGGCGGATGATCTTTGATCTCTTCACCGACCAG
ACCCCGCGGACAGCTGAGAACTTTCGTGCCCTCTGCACCGGCGAGCGGGG
CGTCAGCCCGTTGTCAGGCCACCCACTACACTACAAGGGCTCGACCTTTC
ACCGTGTCATAAAAGGCTTCATGGCGCAAGGAGGGGATTTTACTGCGGGT
GATGGGACGGGGGGGGAGTCCGTGTACGGCGCCAAGTTCGCCGACGAGAA
TTTCCATTGCCTGCACACGGAGCGGGGCATGCTCTCCATGGCTAATGCAG
GACCCAACACCAACGGCAGTCAGTTTTTCCTGACATTTCGGGATACACCC
CACTTGGACGGGAAACACGTTGTCTTTGGCCAGTTGGTGGAGGAAGGAGG
AGGAATGGATGTGTTGCGGATGATCGAGGCCGTGGCGACGGATGGAAGGG
ATAAGCCACGCATGCCTGTTGTGGTGGTGGAGTGTGGCCAGGTGGGGGAG
AGGGTGCGGGATGAGGAGGAGGAAGAGGAAGCAGAGGAGGTGAAGGTAGG
TGTGCCTGGGAAGGAAAAGGGGAAGAAGAAGGGTCAGCAGGAAGAGAACG
AGGGAGACGAGGATGATTTCGCGGAGGAGGAAGGGAAAGGACAGCGAGGA
CGGGCTACGGTACAGGTGGAAGAGGAGGAGGTGGAGGAGGAGGAAGAGGT
GGAAGAGCAGGAAGAAGATATTAGCGGGATGACGGACGCGCAACGTCGTT
TGTTCCAACTTAAGTTAAGATTAAACCAAGGACGCAAATTGAACCGACTG
GCCGTTAAGGAAGAGCACGCCCGAAAATCAACGCCTAATTATGAAGCTAA
GCTCAGGGCTGAGGAACGGAAAGACTCCAACGAACGGTGGAGAAGGGAGT
TGCTCTCTCGGGGGGTGAAGCCTGAAGAGGCGTACCTCTTTGAGACGGCC
GAGGCGGCGGGGAAGAAGATGGCCGCAGCGGCAAGAAAGGAGAAGGGCAA
GGCGGCGTTTGGATGGGACGTGTTCAACCAGGATGCCCTGTATAAAGCTT
ACAAGAAGAGGCTGGCAAAATTGCCGTCGGAAGGAGGGGAAGGGAAGAAG
AGGGGGGAGGAACCGGATCCCTTGGCTTATGGGACGGCAGGGAAGGGGGA
TGAGGAGGGCCTTGAGAGATTGGCGGATGAGTTGGGGGAGAGGGAGAAGG
CACGGAAGAATTTCAGTCGGCGACGGGCTGAGTACGAGGGGGCGGATGTG
ACCAGCATTAATGAGAGGAATAAGATGTTCAACAAGAAATTGAAGAGGGC
ATATGATAAGTACACAGTGGAAACGCGGCAGAATTTGGAGAGGGGGACGG
CCTTGTAG

protein sequence of jgi.p|Nanoce1779_2|554710

>mRNA_4773-protein ID=mRNA_4773-protein|Name=jgi.p|Nanoce1779_2|554710|organism=Nannochloropsis oceanica|type=polypeptide|length=476bp
MAYSTSSGKNNKRTEMQVYMDIKIGPRFAGRMIFDLFTDQTPRTAENFRA
LCTGERGVSPLSGHPLHYKGSTFHRVIKGFMAQGGDFTAGDGTGGESVYG
AKFADENFHCLHTERGMLSMANAGPNTNGSQFFLTFRDTPHLDGKHVVFG
QLVEEGGGMDVLRMIEAVATDGRDKPRMPVVVVECGQVGERVRDEEEEEE
AEEVKVGVPGKEKGKKKGQQEENEGDEDDFAEEEGKGQRGRATVQVEEEE
VEEEEEVEEQEEDISGMTDAQRRLFQLKLRLNQGRKLNRLAVKEEHARKS
TPNYEAKLRAEERKDSNERWRRELLSRGVKPEEAYLFETAEAAGKKMAAA
ARKEKGKAAFGWDVFNQDALYKAYKKRLAKLPSEGGEGKKRGEEPDPLAY
GTAGKGDEEGLERLADELGEREKARKNFSRRRAEYEGADVTSINERNKMF
NKKLKRAYDKYTVETRQNLERGTAL*

mRNA from alignment at scaffold_9:604768..607130+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4773 ID=mRNA_4773|Name=jgi.p|Nanoce1779_2|554710|organism=Nannochloropsis oceanica|type=mRNA|length=2363bp|location=Sequence derived from alignment at scaffold_9:604768..607130+ (Nannochloropsis oceanica)
AAAGACAAAAAGGAGGCCCTTGAATTTTCTTTAGCCAATTTCCTTGTCCA
CCACACAAGCCTTCCTTCCGTCGATAAGAACTCATGCCTAATTGGTGCCC
AGTGGCCGCGTGAAATCACCCTACGAGTGCATTTACCCACTACATGGGGC
TGCTTTTTGGTTTGTGGGCCATGACGACTCTGTACGGCATTTTGCGGCCA
AGGTGCTGGTCATCTATCACGGCCCAGCAGCACTCGCAAATGTATTGAAG
AGCGGGAGGCGCTCAAATGCTCCGTGAAAGCTTGGTTCCGACATCGATGG
GGAGATTTAGCTGCACAGAACCAAAAGAGATGGGAGATGATGGCATCCTC
CGTCATCGAAATGATCCCCGGATCACTCGGTGCACCAGACTAGAGCCCCG
ATATGCTTCTGTCCGGTGACTACATGAGACATGTACATGTAGACTACCGC
ATTCAAAGCCTCCTCCATCCACATCCATAGACAACCCAAGGCCTCTCTAA
GGCTTCTTCCTTCCGTCGCCCCACCTCGCAATAGCCATAATCAACGTAAT
CAGCATCATCACGCCCCCACTTCTGAAGCCATGGCCTACAGCACGAGCAG
CGGCAAGAACAACAAAAGAACGGAAATGCAGGTGTATATGGACATTAAGA
TTGGGCCTCGATTTGCCGGGCGGATGATCTTTGATGTGAGTCTGGAACCC
TTCCCTCCTTCCTCTCTCCCTCCTCAACTCTCCCCTCCCTCGTCCACCTC
CCAGCTGTTGTCCACCCGCCGGCAAAGTTTAGGAGCCTGGCACGCTTCTA
TGCAGCAGATTTCCTGCATGATTGCCCCCTCCCCCCCTTCCCCCCCCTGC
TACAACATGCACTCACCCCTCCATCGTCCCTCTCACCCACCCACCTACCC
AGCTCTTCACCGACCAGACCCCGCGGACAGCTGAGAACTTTCGTGCCCTC
TGCACCGGCGAGCGGGGCGTCAGCCCGTTGTCAGGCCACCCACTACACTA
CAAGGGCTCGACCTTTCACCGTGTCATAAAAGGCTTCATGGCGCAAGGAG
GGGATTTTACTGCGGGTGATGGGACGGGGGGGGAGTCCGTGTACGGGTAG
GTGGCGAAAAGATGGGGGGCACCGAAGGGAGGAGTGGACCAGAAAGGATG
TGCTGTCACACGAAGCTATGGCTTCATAACTTATCGCTCATCTTCATCCC
CTCCCTCCTTCCCCTCCCTCCCTAACTCCCTCAGCGCCAAGTTCGCCGAC
GAGAATTTCCATTGCCTGCACACGGAGCGGGGCATGCTCTCCATGGCTAA
TGCAGGACCCAACACCAACGGCAGTCAGTTTTTCCTGACATTTCGGGATA
CACCCCACTTGGACGGGAAACACGTTGTCTTTGGCCAGTTGGTGGAGGAA
GGAGGAGGAATGGATGTGTTGCGGATGATCGAGGCCGTGGCGACGGATGG
AAGGGATAAGCCACGCATGCCTGTTGTGGTGGTGGAGTGTGGCCAGGTGG
GGGAGAGGGTGCGGGATGAGGAGGAGGAAGAGGAAGCAGAGGAGGTGAAG
GTAGGTGTGCCTGGGAAGGAAAAGGGGAAGAAGAAGGGTCAGCAGGAAGA
GAACGAGGGAGACGAGGATGATTTCGCGGAGGAGGAAGGGAAAGGACAGC
GAGGACGGGCTACGGTACAGGTGGAAGAGGAGGAGGTGGAGGAGGAGGAA
GAGGTGGAAGAGCAGGAAGAAGATATTAGCGGGATGACGGACGCGCAACG
TCGTTTGTTCCAACTTAAGTTAAGATTAAACCAAGGACGCAAATTGAACC
GACTGGCCGTTAAGGAAGAGCACGCCCGAAAATCAACGCCTAATTATGAA
GCTAAGCTCAGGGCTGAGGAACGGAAAGACTCCAACGAACGGTGGAGAAG
GGAGTTGCTCTCTCGGGGGGTGAAGCCTGAAGAGGCGTACCTCTTTGAGA
CGGCCGAGGCGGCGGGGAAGAAGATGGCCGCAGCGGCAAGAAAGGAGAAG
GGCAAGGCGGCGTTTGGATGGGACGTGTTCAACCAGGATGCCCTGTATAA
AGCTTACAAGAAGAGGCTGGCAAAATTGCCGTCGGAAGGAGGGGAAGGGA
AGAAGAGGGGGGAGGAACCGGATCCCTTGGCTTATGGGACGGCAGGGAAG
GGGGATGAGGAGGGCCTTGAGAGATTGGCGGATGAGTTGGGGGAGAGGGA
GAAGGCACGGAAGAATTTCAGTCGGCGACGGGCTGAGTACGAGGGGGCGG
ATGTGACCAGCATTAATGAGAGGAATAAGATGTTCAACAAGAAATTGAAG
AGGGCATATGATAAGTACACAGTGGAAACGCGGCAGAATTTGGAGAGGGG
GACGGCCTTGTAG

Coding sequence (CDS) from alignment at scaffold_9:604768..607130+

>mRNA_4773 ID=mRNA_4773|Name=jgi.p|Nanoce1779_2|554710|organism=Nannochloropsis oceanica|type=CDS|length=4284bp|location=Sequence derived from alignment at scaffold_9:604768..607130+ (Nannochloropsis oceanica)
ATGGCCTACAGCACGAGCAGCGGCAAGAACAACAAAAGAACGGAAATGCA
GGTGTATATGGACATTAAGATTGGGCCTCGATTTGCCGGGCGGATGATCT
TTGATCTCTTCACCGACCAGACCCCGCGGACAGCTGAGAACTTTCGTGCC
CTCTGCACCGGCGAGCGGGGCGTCAGCCCGTTGTCAGGCCACCCACTACA
CTACAAGGGCTCGACCTTTCACCGTGTCATAAAAGGCTTCATGGCGCAAG
GAGGGGATTTTACTGCGGGTGATGGGACGGGGGGGGAGTCCGTGTACGGC
GCCAAGTTCGCCGACGAGAATTTCCATTGCCTGCACACGGAGCGGGGCAT
GCTCTCCATGGCTAATGCAGGACCCAACACCAACGGCAGTCAGTTTTTCC
TGACATTTCGGGATACACCCCACTTGGACGGGAAACACGTTGTCTTTGGC
CAGTTGGTGGAGGAAGGAGGAGGAATGGATGTGTTGCGGATGATCGAGGC
CGTGGCGACGGATGGAAGGGATAAGCCACGCATGCCTGTTGTGGTGGTGG
AGTGTGGCCAGGTGGGGGAGAGGGTGCGGGATGAGGAGGAGGAAGAGGAA
GCAGAGGAGGTGAAGGTAGGTGTGCCTGGGAAGGAAAAGGGGAAGAAGAA
GGGTCAGCAGGAAGAGAACGAGGGAGACGAGGATGATTTCGCGGAGGAGG
AAGGGAAAGGACAGCGAGGACGGGCTACGGTACAGGTGGAAGAGGAGGAG
GTGGAGGAGGAGGAAGAGGTGGAAGAGCAGGAAGAAGATATTAGCGGGAT
GACGGACGCGCAACGTCGTTTGTTCCAACTTAAGTTAAGATTAAACCAAG
GACGCAAATTGAACCGACTGGCCGTTAAGGAAGAGCACGCCCGAAAATCA
ACGCCTAATTATGAAGCTAAGCTCAGGGCTGAGGAACGGAAAGACTCCAA
CGAACGGTGGAGAAGGGAGTTGCTCTCTCGGGGGGTGAAGCCTGAAGAGG
CGTACCTCTTTGAGACGGCCGAGGCGGCGGGGAAGAAGATGGCCGCAGCG
GCAAGAAAGGAGAAGGGCAAGGCGGCGTTTGGATGGGACGTGTTCAACCA
GGATGCCCTGTATAAAGCTTACAAGAAGAGGCTGGCAAAATTGCCGTCGG
AAGGAGGGGAAGGGAAGAAGAGGGGGGAGGAACCGGATCCCTTGGCTTAT
GGGACGGCAGGGAAGGGGGATGAGGAGGGCCTTGAGAGATTGGCGGATGA
GTTGGGGGAGAGGGAGAAGGCACGGAAGAATTTCAGTCGGCGACGGGCTG
AGTACGAGGGGGCGGATGTGACCAGCATTAATGAGAGGAATAAGATGTTC
AACAAGAAATTGAAGAGGGCATATGATAAGTACACAGTGGAAACGCGGCA
GAATTTGGAGAGGGGGACGGCCTTGTAGATGGCCTACAGCACGAGCAGCG
GCAAGAACAACAAAAGAACGGAAATGCAGGTGTATATGGACATTAAGATT
GGGCCTCGATTTGCCGGGCGGATGATCTTTGATCTCTTCACCGACCAGAC
CCCGCGGACAGCTGAGAACTTTCGTGCCCTCTGCACCGGCGAGCGGGGCG
TCAGCCCGTTGTCAGGCCACCCACTACACTACAAGGGCTCGACCTTTCAC
CGTGTCATAAAAGGCTTCATGGCGCAAGGAGGGGATTTTACTGCGGGTGA
TGGGACGGGGGGGGAGTCCGTGTACGGCGCCAAGTTCGCCGACGAGAATT
TCCATTGCCTGCACACGGAGCGGGGCATGCTCTCCATGGCTAATGCAGGA
CCCAACACCAACGGCAGTCAGTTTTTCCTGACATTTCGGGATACACCCCA
CTTGGACGGGAAACACGTTGTCTTTGGCCAGTTGGTGGAGGAAGGAGGAG
GAATGGATGTGTTGCGGATGATCGAGGCCGTGGCGACGGATGGAAGGGAT
AAGCCACGCATGCCTGTTGTGGTGGTGGAGTGTGGCCAGGTGGGGGAGAG
GGTGCGGGATGAGGAGGAGGAAGAGGAAGCAGAGGAGGTGAAGGTAGGTG
TGCCTGGGAAGGAAAAGGGGAAGAAGAAGGGTCAGCAGGAAGAGAACGAG
GGAGACGAGGATGATTTCGCGGAGGAGGAAGGGAAAGGACAGCGAGGACG
GGCTACGGTACAGGTGGAAGAGGAGGAGGTGGAGGAGGAGGAAGAGGTGG
AAGAGCAGGAAGAAGATATTAGCGGGATGACGGACGCGCAACGTCGTTTG
TTCCAACTTAAGTTAAGATTAAACCAAGGACGCAAATTGAACCGACTGGC
CGTTAAGGAAGAGCACGCCCGAAAATCAACGCCTAATTATGAAGCTAAGC
TCAGGGCTGAGGAACGGAAAGACTCCAACGAACGGTGGAGAAGGGAGTTG
CTCTCTCGGGGGGTGAAGCCTGAAGAGGCGTACCTCTTTGAGACGGCCGA
GGCGGCGGGGAAGAAGATGGCCGCAGCGGCAAGAAAGGAGAAGGGCAAGG
CGGCGTTTGGATGGGACGTGTTCAACCAGGATGCCCTGTATAAAGCTTAC
AAGAAGAGGCTGGCAAAATTGCCGTCGGAAGGAGGGGAAGGGAAGAAGAG
GGGGGAGGAACCGGATCCCTTGGCTTATGGGACGGCAGGGAAGGGGGATG
AGGAGGGCCTTGAGAGATTGGCGGATGAGTTGGGGGAGAGGGAGAAGGCA
CGGAAGAATTTCAGTCGGCGACGGGCTGAGTACGAGGGGGCGGATGTGAC
CAGCATTAATGAGAGGAATAAGATGTTCAACAAGAAATTGAAGAGGGCAT
ATGATAAGTACACAGTGGAAACGCGGCAGAATTTGGAGAGGGGGACGGCC
TTGTAGATGGCCTACAGCACGAGCAGCGGCAAGAACAACAAAAGAACGGA
AATGCAGGTGTATATGGACATTAAGATTGGGCCTCGATTTGCCGGGCGGA
TGATCTTTGATCTCTTCACCGACCAGACCCCGCGGACAGCTGAGAACTTT
CGTGCCCTCTGCACCGGCGAGCGGGGCGTCAGCCCGTTGTCAGGCCACCC
ACTACACTACAAGGGCTCGACCTTTCACCGTGTCATAAAAGGCTTCATGG
CGCAAGGAGGGGATTTTACTGCGGGTGATGGGACGGGGGGGGAGTCCGTG
TACGGCGCCAAGTTCGCCGACGAGAATTTCCATTGCCTGCACACGGAGCG
GGGCATGCTCTCCATGGCTAATGCAGGACCCAACACCAACGGCAGTCAGT
TTTTCCTGACATTTCGGGATACACCCCACTTGGACGGGAAACACGTTGTC
TTTGGCCAGTTGGTGGAGGAAGGAGGAGGAATGGATGTGTTGCGGATGAT
CGAGGCCGTGGCGACGGATGGAAGGGATAAGCCACGCATGCCTGTTGTGG
TGGTGGAGTGTGGCCAGGTGGGGGAGAGGGTGCGGGATGAGGAGGAGGAA
GAGGAAGCAGAGGAGGTGAAGGTAGGTGTGCCTGGGAAGGAAAAGGGGAA
GAAGAAGGGTCAGCAGGAAGAGAACGAGGGAGACGAGGATGATTTCGCGG
AGGAGGAAGGGAAAGGACAGCGAGGACGGGCTACGGTACAGGTGGAAGAG
GAGGAGGTGGAGGAGGAGGAAGAGGTGGAAGAGCAGGAAGAAGATATTAG
CGGGATGACGGACGCGCAACGTCGTTTGTTCCAACTTAAGTTAAGATTAA
ACCAAGGACGCAAATTGAACCGACTGGCCGTTAAGGAAGAGCACGCCCGA
AAATCAACGCCTAATTATGAAGCTAAGCTCAGGGCTGAGGAACGGAAAGA
CTCCAACGAACGGTGGAGAAGGGAGTTGCTCTCTCGGGGGGTGAAGCCTG
AAGAGGCGTACCTCTTTGAGACGGCCGAGGCGGCGGGGAAGAAGATGGCC
GCAGCGGCAAGAAAGGAGAAGGGCAAGGCGGCGTTTGGATGGGACGTGTT
CAACCAGGATGCCCTGTATAAAGCTTACAAGAAGAGGCTGGCAAAATTGC
CGTCGGAAGGAGGGGAAGGGAAGAAGAGGGGGGAGGAACCGGATCCCTTG
GCTTATGGGACGGCAGGGAAGGGGGATGAGGAGGGCCTTGAGAGATTGGC
GGATGAGTTGGGGGAGAGGGAGAAGGCACGGAAGAATTTCAGTCGGCGAC
GGGCTGAGTACGAGGGGGCGGATGTGACCAGCATTAATGAGAGGAATAAG
ATGTTCAACAAGAAATTGAAGAGGGCATATGATAAGTACACAGTGGAAAC
GCGGCAGAATTTGGAGAGGGGGACGGCCTTGTAG

Synonyms

Publications