|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 551290 |
| Track | FilteredModels2 |
| ProteinId | 551204 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:1153269..1156108 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_475 ID=mRNA_475|Name=jgi.p|Nanoce1779_2|551204|organism=Nannochloropsis oceanica|type=mRNA|length=2241bp
CAGGCAGCCCAAACGAGGGATCTCGGGGTGCGTCAATTACAAGCATTGCG
GGAGTGTCTATGCGGGCTGGTTGACTTGAGCTTCACCAACTTGAAACTTT
CCCATCAAGTATCTCCTGCGCCCCTCATACGCCACGAGCTCCGAGGACAC
AGACAGCACAAACCATGACGAAGCCCAAAGCTCCTCGGGTAGCCATGATT
CTGGCTGCCTGCTTTCAAAACTTAGCATGTGGTGGACTCATCTTCGGATG
GGCCGCCATCTCCAGCTCCCTCCTTATCGCGTCAAACGAAGAGGGAGGCC
CCGCCCTAAGTCGTGACGCCGTCCATAGGCTCTTTGTCATGGCCACTTCC
ATAAACTTCACCGCTCCCCTCCTCCTCGGTATCTTGCTCGATGCGTATGG
ACCACGCATATGTTCTGCCTTGAGCATCTTGCTCGTCGGGAGCGGTTTTG
TCCTCTTCTCGGCCTCCATCCCCTCTTTCCCCACTCACCTTCCAGCCGTC
ATTCTCATTGCCTTTGGTGGCCCAGGAGTGCAATCGTCGATAATCCATTT
GTCGAACCTCTATCCAGCCAGCAAGGCTACCGTCACCAGTATCATTACCG
GTTCCTTCAACCTCTCCTTCTTCATCTTCTTCGTCTTCGATCGCCTGTGG
AATCGCTTCCATTTCACATACCAAGAGATATTTGCAGGGTATAGCATAGT
GTGTGCTGTGGCCTTTTCGTTCTCCCTCTTCCTATGGCCCGATCAACCCT
TCTCCTTTCAAGAGCAGATGCTGGAAGAAATCGTACCCGATCAAGCCTCC
ATTGCTCGCGTTGGTCCTATCCGCGCTCCTTCCGTCTTCAAAAAAACGTC
CTTGGCCCCCCCGAGGCCAGGGCAGGGAGGGCTACCCATCCTCTCCTCCA
CCACCACCCATGATGCCACCGCCAGTGCAGCTAGTCGGGAAAATACGGCG
TTGCTGAACCCTGGCTCAGCTGCAGCGGCAGCGATGGATGACATTAAGGA
AGCCTCATTTTGGGAACAACTTCGGTCGGCGCCTTTTGTGAGGGTGACAG
TCTTCATCGTCGTGGCCTCGTTTTGGGCAAATTTTTACATTGGGACGATA
GATATTCAACTGGCCGACGGGCATCTGCTTAGTCCCGAAAAACAGAACTA
TATGGTGCGGCTGTTTACGGCTGTTACGACGGCTGGAGTGTTAGGAATTC
CAATTGTGGGGGGGTTGATGGACAGATACGGTTTTGTCACCACTGCTGCT
GTCACTGTGTCCATGGCCGTGATCTACGGGCTCGGGATCATCATCGCTCA
AGCTCAAGGAGGTATCCTCCCCCTCGTCCTTGCATTTATCGCCTATGCCT
TGTTTCGGACCTTCTTGTTTACCTATTTCTTCGCGTACCTCGCCGATGCC
CTCGGCTTTCGTTTCTTTGGTGTGCTGGCGGGGGTATCCTTTTTCATCGC
CGGTTGCGCGGGTTTGCTTCAATCCCCTCTCATGCAGTTCGGGGCGGGCA
ATTGTCATTTGACCCTCGAGCCGTTATCGGGCTGTGACAGTGGGCGGTGG
TCCACGATTAATTTTTATCAACTAGCCTGCCTGGCATCATTGTATGTGAT
TCCATTGATGGATATGTGGGCAGCGCGTAAAGCGGACGCGCAGAGGAAGG
TGGTAAGAGGGAAGGAGGGGGGGAGGGGGGGGGAGGCGTTGAGGTCGACG
TACCAGACGGTGAGTGGGTTGAAACAACAGCAGCCGAGAGTGGCGGCGGG
TGCGACAGGAGGGAAGGGGGGAAGGGATGGAGGCGGGGTAAGGAGGAGCG
AGGTGGTTTAGAGCGGAGGAGGGTGGAGGGAAAGACTTGGTCGTGTGTGT
AGGTGGGTGTCGATGTGTGCACGTTACTCCATTTTGGTGCTGCTGTGAGA
TCATGAAGAAGTAGATTGAGTTAAGATTAAGTCATTAGGAGTTGACTCCT
CATTCTCATTCTGGTGCAGCAACACACACGAGCGGATGCCTTTTTCACAC
GAACAAGGACCACAGTAATAGCGGGAATGATAGCAGTAGAAGCCGTTGGT
TTCTACGCCCAAGACGGTACAAAAAGACGTAGAAGGGCAAAGAAAGAAAC
GCCTGTTGTGGGCGAGGAGAAAGGGAGCAGTATCATTTACGGGACTGAAA
GCGAAAACTCGTCCATCAATAATAAAGTCGGAGTGATCACCCTCACAGCA
GCCCACAACAGAAGCAACAGAAAGAACACAAACGCCAGATG back to topprotein sequence of jgi.p|Nanoce1779_2|551204 >mRNA_475-protein ID=mRNA_475-protein|Name=jgi.p|Nanoce1779_2|551204|organism=Nannochloropsis oceanica|type=polypeptide|length=549bp
MTKPKAPRVAMILAACFQNLACGGLIFGWAAISSSLLIASNEEGGPALSR
DAVHRLFVMATSINFTAPLLLGILLDAYGPRICSALSILLVGSGFVLFSA
SIPSFPTHLPAVILIAFGGPGVQSSIIHLSNLYPASKATVTSIITGSFNL
SFFIFFVFDRLWNRFHFTYQEIFAGYSIVCAVAFSFSLFLWPDQPFSFQE
QMLEEIVPDQASIARVGPIRAPSVFKKTSLAPPRPGQGGLPILSSTTTHD
ATASAASRENTALLNPGSAAAAAMDDIKEASFWEQLRSAPFVRVTVFIVV
ASFWANFYIGTIDIQLADGHLLSPEKQNYMVRLFTAVTTAGVLGIPIVGG
LMDRYGFVTTAAVTVSMAVIYGLGIIIAQAQGGILPLVLAFIAYALFRTF
LFTYFFAYLADALGFRFFGVLAGVSFFIAGCAGLLQSPLMQFGAGNCHLT
LEPLSGCDSGRWSTINFYQLACLASLYVIPLMDMWAARKADAQRKVVRGK
EGGRGGEALRSTYQTVSGLKQQQPRVAAGATGGKGGRDGGGVRRSEVV* back to topmRNA from alignment at scaffold_3:1153269..1156108+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_475 ID=mRNA_475|Name=jgi.p|Nanoce1779_2|551204|organism=Nannochloropsis oceanica|type=mRNA|length=2840bp|location=Sequence derived from alignment at scaffold_3:1153269..1156108+ (Nannochloropsis oceanica)
CAGGCAGCCCAAACGAGGGATCTCGGGGTGCGTCAATTACAAGCATTGCG
GGAGTGTCTATGCGGGCTGGTTGACTTGAGCTTCACCAACTTGAAACTTT
CCCATCAAGTATCTCCTGCGCCCCTCATACGCCACGAGCTCCGAGGACAC
AGACAGCACGTGCGTCAAGCCAAGCCAGGAAAATTGTTGTCGGGCCCCAT
TGTGCCATTGTCTCGTTCAGATGAAAATTAATGTCCTTCTCAATGTTGCT
AGAAGCCTCTCCACGGTCTACACTTTCATGATGTCCATTCTCCTCCCCAA
GCTGCAGGCCAGTCTGGCAATATTTTCTACATGGGATCAAGCGCGCGTCC
CATCCCTTCCATCGTGCTTATTTTTCCTGCTTTGATCGGCTGATGCATGT
CTAACCCTCCCCACTATCTCTCTTCCCTCTCCCCCCACTCACCCTTTCTT
CCTATCCTTAATGCGCACCCTTCTCCTCTCACCCTTACGCCTAAAACAGA
AACCATGACGAAGCCCAAAGCTCCTCGGGTAGCCATGATTCTGGCTGCCT
GCTTTCAAAACTTAGCATGTGGTGGACTCATCTTCGGATGGGCCGCCATC
TCCAGCTCCCTCCTTATCGCGTCAAACGAAGAGGGAGGCCCCGCCCTAAG
TCGTGACGCCGTCCATAGGCTCTTTGTCATGGCCACTTCCATAAACTTCA
CCGCTCCCCTCCTCCTCGGTATCTTGCTCGATGCGTATGGACCACGCATA
TGTTCTGCCTTGAGCATCTTGCTCGTCGGGAGCGGTTTTGTCCTCTTCTC
GGCCTCCATCCCCTCTTTCCCCACTCACCTTCCAGCCGTCATTCTCATTG
CCTTTGGTGGCCCAGGAGTGCAATCGTCGATAATCCATTTGTCGAACCTC
TATCCAGCCAGCAAGGCTACCGTCACCAGTATCATTACCGGTTCCTTCAA
CCTCTCCTTCTTCATCTTCTTCGTCTTCGATCGCCTGTGGAATCGCTTCC
ATTTCACATACCAAGAGATATTTGCAGGGTATAGCATAGTGTGTGCTGTG
GCCTTTTCGTTCTCCCTCTTCCTATGGCCCGATCAACCCTTCTCCTTTCA
AGAGCAGATGCTGGAAGAAATCGTACCCGATCAAGCCTCCATTGCTCGCG
TTGGTCCTATCCGCGCTCCTTCCGTCTTCAAAAAAACGTCCTTGGCCCCC
CCGAGGCCAGGGCAGGGAGGGCTACCCATCCTCTCCTCCACCACCACCCA
TGATGCCACCGCCAGTGCAGCTAGTCGGGAAAATACGGCGTTGCTGAACC
CTGGCTCAGCTGCAGCGGCAGCGATGGATGACATTAAGGAAGCCTCATTT
TGGGAACAACTTCGGTCGGCGCCTTTTGTGAGGGTGACAGTCTTCATCGT
CGTGGCCTCGTTTTGGGCAAATTTTTACATTGGGACGATAGATATTCAAC
TGGCCGACGGGCATCTGCTTAGTCCCGAAAAACAGAACTATATGGTGCGG
CTGTTTACGGCTGTTACGACGGCTGGAGTGTTAGGAATTCCAATTGTGGG
GGGGTTGATGGACAGGTGGGTGGGGAGGAAAAAGAGAGAGGCAGGAAGGG
AGGGAGGGCAGAACATGTATGTTGAACTCTATCTTGATTTTATGTTTCAT
AGACTATGCACCTGTTCCTTCCTCCCTTCCTCCCGTCCTCCTCCAGAGCA
CGGATTAGGGGCCAGTGCTGCCGTTACAGTCGCTGCCCACAGCCGATTTG
GGACAATTATCGCTCACCATCCTTTATTCCCTCTCTCCCACATTCCCTAC
TTTCCTGCCTTTCCTCCTCTCTAGATACGGTTTTGTCACCACTGCTGCTG
TCACTGTGTCCATGGCCGTGATCTACGGGCTCGGGATCATCATCGCTCAA
GCTCAAGGAGGTATCCTCCCCCTCGTCCTTGCATTTATCGCCTATGCCTT
GTTTCGGACCTTCTTGTTTACCTATTTCTTCGCGTACCTCGCCGATGCCC
TCGGCTTTCGTTTCTTTGGTGTGCTGGCGGGGGTATCCTTTTTCATCGCC
GGTTGCGCGGGTTTGCTTCAATCCCCTCTCATGCAGTTCGGGGCGGGCAA
TTGTCATTTGACCCTCGAGCCGTTATCGGGCTGTGACAGTGGGCGGTGGT
CCACGATTAATTTTTATCAACTAGCCTGCCTGGCATCATTGTATGTGATT
CCATTGATGGATATGTGGGCAGCGCGTAAAGCGGACGCGCAGAGGAAGGT
GGTAAGAGGGAAGGAGGGGGGGAGGGGGGGGGAGGCGTTGAGGTCGACGT
ACCAGACGGTGAGTGGGTTGAAACAACAGCAGCCGAGAGTGGCGGCGGGT
GCGACAGGAGGGAAGGGGGGAAGGGATGGAGGCGGGGTAAGGAGGAGCGA
GGTGGTTTAGAGCGGAGGAGGGTGGAGGGAAAGACTTGGTCGTGTGTGTA
GGTGGGTGTCGATGTGTGCACGTTACTCCATTTTGGTGCTGCTGTGAGAT
CATGAAGAAGTAGATTGAGTTAAGATTAAGTCATTAGGAGTTGACTCCTC
ATTCTCATTCTGGTGCAGCAACACACACGAGCGGATGCCTTTTTCACACG
AACAAGGACCACAGTAATAGCGGGAATGATAGCAGTAGAAGCCGTTGGTT
TCTACGCCCAAGACGGTACAAAAAGACGTAGAAGGGCAAAGAAAGAAACG
CCTGTTGTGGGCGAGGAGAAAGGGAGCAGTATCATTTACGGGACTGAAAG
CGAAAACTCGTCCATCAATAATAAAGTCGGAGTGATCACCCTCACAGCAG
CCCACAACAGAAGCAACAGAAAGAACACAAACGCCAGATG back to topCoding sequence (CDS) from alignment at scaffold_3:1153269..1156108+ >mRNA_475 ID=mRNA_475|Name=jgi.p|Nanoce1779_2|551204|organism=Nannochloropsis oceanica|type=CDS|length=3294bp|location=Sequence derived from alignment at scaffold_3:1153269..1156108+ (Nannochloropsis oceanica)
ATGACGAAGCCCAAAGCTCCTCGGGTAGCCATGATTCTGGCTGCCTGCTT
TCAAAACTTAGCATGTGGTGGACTCATCTTCGGATGGGCCGCCATCTCCA
GCTCCCTCCTTATCGCGTCAAACGAAGAGGGAGGCCCCGCCCTAAGTCGT
GACGCCGTCCATAGGCTCTTTGTCATGGCCACTTCCATAAACTTCACCGC
TCCCCTCCTCCTCGGTATCTTGCTCGATGCGTATGGACCACGCATATGTT
CTGCCTTGAGCATCTTGCTCGTCGGGAGCGGTTTTGTCCTCTTCTCGGCC
TCCATCCCCTCTTTCCCCACTCACCTTCCAGCCGTCATTCTCATTGCCTT
TGGTGGCCCAGGAGTGCAATCGTCGATAATCCATTTGTCGAACCTCTATC
CAGCCAGCAAGGCTACCGTCACCAGTATCATTACCGGTTCCTTCAACCTC
TCCTTCTTCATCTTCTTCGTCTTCGATCGCCTGTGGAATCGCTTCCATTT
CACATACCAAGAGATATTTGCAGGGTATAGCATAGTGTGTGCTGTGGCCT
TTTCGTTCTCCCTCTTCCTATGGCCCGATCAACCCTTCTCCTTTCAAGAG
CAGATGCTGGAAGAAATCGTACCCGATCAAGCCTCCATTGCTCGCGTTGG
TCCTATCCGCGCTCCTTCCGTCTTCAAAAAAACGTCCTTGGCCCCCCCGA
GGCCAGGGCAGGGAGGGCTACCCATCCTCTCCTCCACCACCACCCATGAT
GCCACCGCCAGTGCAGCTAGTCGGGAAAATACGGCGTTGCTGAACCCTGG
CTCAGCTGCAGCGGCAGCGATGGATGACATTAAGGAAGCCTCATTTTGGG
AACAACTTCGGTCGGCGCCTTTTGTGAGGGTGACAGTCTTCATCGTCGTG
GCCTCGTTTTGGGCAAATTTTTACATTGGGACGATAGATATTCAACTGGC
CGACGGGCATCTGCTTAGTCCCGAAAAACAGAACTATATGGTGCGGCTGT
TTACGGCTGTTACGACGGCTGGAGTGTTAGGAATTCCAATTGTGGGGGGG
TTGATGGACAGATACGGTTTTGTCACCACTGCTGCTGTCACTGTGTCCAT
GGCCGTGATCTACGGGCTCGGGATCATCATCGCTCAAGCTCAAGGAGGTA
TCCTCCCCCTCGTCCTTGCATTTATCGCCTATGCCTTGTTTCGGACCTTC
TTGTTTACCTATTTCTTCGCGTACCTCGCCGATGCCCTCGGCTTTCGTTT
CTTTGGTGTGCTGGCGGGGGTATCCTTTTTCATCGCCGGTTGCGCGGGTT
TGCTTCAATCCCCTCTCATGCAGTTCGGGGCGGGCAATTGTCATTTGACC
CTCGAGCCGTTATCGGGCTGTGACAGTGGGCGGTGGTCCACGATTAATTT
TTATCAACTAGCCTGCCTGGCATCATTGTATGTGATTCCATTGATGGATA
TGTGGGCAGCGCGTAAAGCGGACGCGCAGAGGAAGGTGGTAAGAGGGAAG
GAGGGGGGGAGGGGGGGGGAGGCGTTGAGGTCGACGTACCAGACGGTGAG
TGGGTTGAAACAACAGCAGCCGAGAGTGGCGGCGGGTGCGACAGGAGGGA
AGGGGGGAAGGGATGGAGGCGGGGTAAGGAGGAGCGAGGTGGTTTAGATG
ACGAAGCCCAAAGCTCCTCGGGTAGCCATGATTCTGGCTGCCTGCTTTCA
AAACTTAGCATGTGGTGGACTCATCTTCGGATGGGCCGCCATCTCCAGCT
CCCTCCTTATCGCGTCAAACGAAGAGGGAGGCCCCGCCCTAAGTCGTGAC
GCCGTCCATAGGCTCTTTGTCATGGCCACTTCCATAAACTTCACCGCTCC
CCTCCTCCTCGGTATCTTGCTCGATGCGTATGGACCACGCATATGTTCTG
CCTTGAGCATCTTGCTCGTCGGGAGCGGTTTTGTCCTCTTCTCGGCCTCC
ATCCCCTCTTTCCCCACTCACCTTCCAGCCGTCATTCTCATTGCCTTTGG
TGGCCCAGGAGTGCAATCGTCGATAATCCATTTGTCGAACCTCTATCCAG
CCAGCAAGGCTACCGTCACCAGTATCATTACCGGTTCCTTCAACCTCTCC
TTCTTCATCTTCTTCGTCTTCGATCGCCTGTGGAATCGCTTCCATTTCAC
ATACCAAGAGATATTTGCAGGGTATAGCATAGTGTGTGCTGTGGCCTTTT
CGTTCTCCCTCTTCCTATGGCCCGATCAACCCTTCTCCTTTCAAGAGCAG
ATGCTGGAAGAAATCGTACCCGATCAAGCCTCCATTGCTCGCGTTGGTCC
TATCCGCGCTCCTTCCGTCTTCAAAAAAACGTCCTTGGCCCCCCCGAGGC
CAGGGCAGGGAGGGCTACCCATCCTCTCCTCCACCACCACCCATGATGCC
ACCGCCAGTGCAGCTAGTCGGGAAAATACGGCGTTGCTGAACCCTGGCTC
AGCTGCAGCGGCAGCGATGGATGACATTAAGGAAGCCTCATTTTGGGAAC
AACTTCGGTCGGCGCCTTTTGTGAGGGTGACAGTCTTCATCGTCGTGGCC
TCGTTTTGGGCAAATTTTTACATTGGGACGATAGATATTCAACTGGCCGA
CGGGCATCTGCTTAGTCCCGAAAAACAGAACTATATGGTGCGGCTGTTTA
CGGCTGTTACGACGGCTGGAGTGTTAGGAATTCCAATTGTGGGGGGGTTG
ATGGACAGATACGGTTTTGTCACCACTGCTGCTGTCACTGTGTCCATGGC
CGTGATCTACGGGCTCGGGATCATCATCGCTCAAGCTCAAGGAGGTATCC
TCCCCCTCGTCCTTGCATTTATCGCCTATGCCTTGTTTCGGACCTTCTTG
TTTACCTATTTCTTCGCGTACCTCGCCGATGCCCTCGGCTTTCGTTTCTT
TGGTGTGCTGGCGGGGGTATCCTTTTTCATCGCCGGTTGCGCGGGTTTGC
TTCAATCCCCTCTCATGCAGTTCGGGGCGGGCAATTGTCATTTGACCCTC
GAGCCGTTATCGGGCTGTGACAGTGGGCGGTGGTCCACGATTAATTTTTA
TCAACTAGCCTGCCTGGCATCATTGTATGTGATTCCATTGATGGATATGT
GGGCAGCGCGTAAAGCGGACGCGCAGAGGAAGGTGGTAAGAGGGAAGGAG
GGGGGGAGGGGGGGGGAGGCGTTGAGGTCGACGTACCAGACGGTGAGTGG
GTTGAAACAACAGCAGCCGAGAGTGGCGGCGGGTGCGACAGGAGGGAAGG
GGGGAAGGGATGGAGGCGGGGTAAGGAGGAGCGAGGTGGTTTAG back to top
|