jgi.p|Nanoce1779_2|587704, mRNA_4738 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587704
Unique Name	mRNA_4738
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1199
Alignment location	scaffold_9:515435..517370 +

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Properties


Property Name	Value
TranscriptId	587790
Track	FilteredModels2
ProteinId	587704

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:515435..517370 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587704	gene_4738	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587704	mRNA_4738-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4738	CDS_4738	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:515435..517370+
coding sequence from alignment at scaffold_9:515435..517370+

mRNA sequence

>mRNA_4738 ID=mRNA_4738|Name=jgi.p|Nanoce1779_2|587704|organism=Nannochloropsis oceanica|type=mRNA|length=1199bp
AGAGGCAGCACAGACAGGTGGATAAGATAGAGGCCTAGCCAACGCACCGG
CAGCAATTCGCAAAGCGACCACTCCAGCACTCAGCAACCCGACGAACATT
ACTCATTCTCACTTGATGGTACCAAGTCTCGCCGTGTCTGGACCAGACCG
AATGGAGCAAGGCACGCAAGGTCAGGGCGAACCCCTCTTCTCCTGCCGCA
TCGATAACGCTAAGGTGGTAACAGCCACATTGACTTGTTTAAGTAATGGC
AGCAAGAAGGACCAGCTCGCGCAGGTGGAGGTGAATGAAGATGGCATCGT
CTTCATCGTCACGGGCCGGGCCAAGTTCACGCAGTCGCAAGGCACTATCA
ACAGGTCCCTCTTCCAGGCTTTTCAATGCCAGCCCCAAGGGGGACGATTC
ACTGTCGATCTTAATCTGCTTTTGGAATGTCTACAGGTATTTGGCGCAGC
TTCTCTGGCGAGCACGATGCTAACCATGTCATATGAGCCCAACCAGGCCG
TCCTCCGCCTCACACTCGAAGAGCAAGGAGTCCTGACCACGTGCGACATT
CACGCGATAGAAGAAGGAGAAGACGCACTAGACCTCGCTGCGCTTGCCTC
TGCATTCCGCAGCAGCCCGGAGGTGCTTCGCGCTATTTTGAAAAGTGAAG
TGCTCAAGGAGGCTATCAGTGACTTGTCTGACCTGCCGGGAGCAGGCTCG
GTGAGGGTGGCGGTAGCGCCCCAAGAGCCACATTTTCACTTGACGGCTGG
AGGGGTGTATGGTGCACTCGAAATTTTCCTTCCCAGAAGCAGTGAGGTAA
AATTTTGAAATAAGAAGGAATGACATGTGTGCTGCGACTCACTCACTTTC
TCTCCTTCCTTCCCTTCCTCCCTCTCCCTCTTTTCCTCCCTTCTTAGGCG
TTCGTGCATTTTGACTGTTCCGAAGCCCGCGCATGGAGTTATGGCCTTGG
GGCACTCAATCAGGGAATGCGTGCGCTGACCGTGGCGAAGGAAACATACA
TGCGAATTAACGAGGAGGGTATATTGTGCGTGCAGCACCAGGTGGAAAAC
ACGGCGAGCGGTCACAGTACATTCATCGACTTTCTGTGCTTGGCGGAGGA
GACAGGTGAAGAGGAGCAGAGGGAGCAGGAGGAGAGAGAGGAGAAGGAGG
AGGAGAAAGGGGGAGAGAGCGATGCGGAGAGCATGGGAGGGGTTCAGCA

protein sequence of jgi.p|Nanoce1779_2|587704

>mRNA_4738-protein ID=mRNA_4738-protein|Name=jgi.p|Nanoce1779_2|587704|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MVPSLAVSGPDRMEQGTQGQGEPLFSCRIDNAKVVTATLTCLSNGSKKDQ
LAQVEVNEDGIVFIVTGRAKFTQSQGTINRSLFQAFQCQPQGGRFTVDLN
LLLECLQVFGAASLASTMLTMSYEPNQAVLRLTLEEQGVLTTCDIHAIEE
GEDALDLAALASAFRSSPEVLRAILKSEVLKEAISDLSDLPGAGSVRVAV
APQEPHFHLTAGGVYGALEIFLPRSSEVKF*

mRNA from alignment at scaffold_9:515435..517370+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4738 ID=mRNA_4738|Name=jgi.p|Nanoce1779_2|587704|organism=Nannochloropsis oceanica|type=mRNA|length=1936bp|location=Sequence derived from alignment at scaffold_9:515435..517370+ (Nannochloropsis oceanica)
AGAGGCAGCACAGACAGGTGGATAAGATAGAGGCCTAGCCAACGCACCGG
CAGCAATTCGCAAAGCGACCACTCCAGCACTCAGCAACCCGACGAACATT
ACTCATTCTCACTTGATGGTACCAAGTCTCGCCGTGTCTGGACCAGACCG
AGTAAGTGCCCTTTAAAGTGCGGAGGGGCAGTGGAAAGGGAAGGAGGGAG
AATAGGAAGAATGGATGTGGGTGCGATGCGATCAGGAGGGGACGAAAGGG
GAGCTATCAAAGAGGAGGAGAAGAAGGGGGACGAGGGGTTAGTGAAACAG
GCTTCCACCCACCCACACCTTGGCCTTCTTATTCTCCACATGCTTTCTGC
TGCACGTGCTCATTCACATGCACCCGACATATGTCATATACCACCCTCCT
TCCCCCTGACATTCACCTCTCGACTTCCTTCCTCTTCCCTCCCTCATCCC
TCACTACGTCCAACACACAGATGGAGCAAGGCACGCAAGGTCAGGGCGAA
CCCCTCTTCTCCTGCCGCATCGATAACGCTAAGGTGGTAACAGCCACATT
GACTTGTTTAAGTAATGGCAGCAAGAAGGACCAGCTCGCGCAGGTGGAGG
TGAATGAAGATGGTAAGTGTGAGGATGGGAGGGAAGGAGGTATACGATGT
AGGTAGATCCTATTTGTCCTCTCTCCCTAACGTCATTTTATTTCTCATCC
TCTCTCCCTCACTCATACAGGCATCGTCTTCATCGTCACGGGCCGGGCCA
AGTTCACGCAGGTGCGTGGTGTGTGTGGGAGTGAGGCACAAAAATTATTA
TTATCTTCCTTTCTTGCCTCGCAGTCAGCTTTGAGGCCTTCCACTCCCCG
TCTCGCTCCTGGTCCTCAAACATCTCAAGCTATAAATCTTTTTCTCCCTC
CCTCCTTTCCTCCCTCCCTCCCTCTCTCAGTCGCAAGGCACTATCAACAG
GTCCCTCTTCCAGGCTTTTCAATGCCAGCCCCAAGGGGGACGATTCACTG
TCGATCTTAATCTGCTTTTGGAATGTCTACAGGTATTTGGCGCAGCTTCT
CTGGCGAGCACGATGCTAACCATGTCATATGAGGTGAGCGAGGTTGGGAG
GCAGCGCGGGGGGGAGGAATATGCGGAAGAAGTGAACTCGCGGATTTTGT
TACTTCTTTCCTAACCAGCGAGACTAATCCCCCCTCCCTCCTTCTCTTCC
TCCCTCCCTTCCCCTCCCCCCTAGCCCAACCAGGCCGTCCTCCGCCTCAC
ACTCGAAGAGCAAGGAGTCCTGACCACGTGCGACATTCACGCGATAGAAG
AAGGAGAAGACGCACTAGACCTCGCTGCGCTTGCCTCTGCATTCCGCAGC
AGCCCGGAGGTGCTTCGCGCTATTTTGAAAAGTGAAGTGCTCAAGGAGGC
TATCAGTGACTTGTCTGACCTGCCGGGAGCAGGCTCGGTGAGGGTGGCGG
TAGCGCCCCAAGAGCCACATTTTCACTTGACGGCTGGAGGGGTGTATGGT
GCACTCGAAATTTTCCTTCCCAGAAGCAGTGAGGTAAAATTTTGAAATAA
GAAGGAATGACATGTGTGCTGCGACTCACTCACTTTCTCTCCTTCCTTCC
CTTCCTCCCTCTCCCTCTTTTCCTCCCTTCTTAGGCGTTCGTGCATTTTG
ACTGTTCCGAAGCCCGCGCATGGAGTTATGGCCTTGGGGCACTCAATCAG
GGAATGCGTGCGCTGACCGTGGCGAAGGAAACATACATGCGAATTAACGA
GGAGGGTATATTGTGCGTGCAGCACCAGGTGGAAAACACGGCGAGCGGTC
ACAGTACATTCATCGACTTTCTGTGCTTGGCGGAGGAGACAGGTGAAGAG
GAGCAGAGGGAGCAGGAGGAGAGAGAGGAGAAGGAGGAGGAGAAAGGGGG
AGAGAGCGATGCGGAGAGCATGGGAGGGGTTCAGCA

Coding sequence (CDS) from alignment at scaffold_9:515435..517370+

>mRNA_4738 ID=mRNA_4738|Name=jgi.p|Nanoce1779_2|587704|organism=Nannochloropsis oceanica|type=CDS|length=3465bp|location=Sequence derived from alignment at scaffold_9:515435..517370+ (Nannochloropsis oceanica)
ATGGTACCAAGTCTCGCCGTGTCTGGACCAGACCGAATGGAGCAAGGCAC
GCAAGGTCAGGGCGAACCCCTCTTCTCCTGCCGCATCGATAACGCTAAGG
TGGTAACAGCCACATTGACTTGTTTAAGTAATGGCAGCAAGAAGGACCAG
CTCGCGCAGGTGGAGGTGAATGAAGATGGCATCGTCTTCATCGTCACGGG
CCGGGCCAAGTTCACGCAGTCGCAAGGCACTATCAACAGGTCCCTCTTCC
AGGCTTTTCAATGCCAGCCCCAAGGGGGACGATTCACTGTCGATCTTAAT
CTGCTTTTGGAATGTCTACAGGTATTTGGCGCAGCTTCTCTGGCGAGCAC
GATGCTAACCATGTCATATGAGCCCAACCAGGCCGTCCTCCGCCTCACAC
TCGAAGAGCAAGGAGTCCTGACCACGTGCGACATTCACGCGATAGAAGAA
GGAGAAGACGCACTAGACCTCGCTGCGCTTGCCTCTGCATTCCGCAGCAG
CCCGGAGGTGCTTCGCGCTATTTTGAAAAGTGAAGTGCTCAAGGAGGCTA
TCAGTGACTTGTCTGACCTGCCGGGAGCAGGCTCGGTGAGGGTGGCGGTA
GCGCCCCAAGAGCCACATTTTCACTTGACGGCTGGAGGGGTGTATGGTGC
ACTCGAAATTTTCCTTCCCAGAAGCAGTGAGGTAAAATTTTGAATGGTAC
CAAGTCTCGCCGTGTCTGGACCAGACCGAATGGAGCAAGGCACGCAAGGT
CAGGGCGAACCCCTCTTCTCCTGCCGCATCGATAACGCTAAGGTGGTAAC
AGCCACATTGACTTGTTTAAGTAATGGCAGCAAGAAGGACCAGCTCGCGC
AGGTGGAGGTGAATGAAGATGGCATCGTCTTCATCGTCACGGGCCGGGCC
AAGTTCACGCAGTCGCAAGGCACTATCAACAGGTCCCTCTTCCAGGCTTT
TCAATGCCAGCCCCAAGGGGGACGATTCACTGTCGATCTTAATCTGCTTT
TGGAATGTCTACAGGTATTTGGCGCAGCTTCTCTGGCGAGCACGATGCTA
ACCATGTCATATGAGCCCAACCAGGCCGTCCTCCGCCTCACACTCGAAGA
GCAAGGAGTCCTGACCACGTGCGACATTCACGCGATAGAAGAAGGAGAAG
ACGCACTAGACCTCGCTGCGCTTGCCTCTGCATTCCGCAGCAGCCCGGAG
GTGCTTCGCGCTATTTTGAAAAGTGAAGTGCTCAAGGAGGCTATCAGTGA
CTTGTCTGACCTGCCGGGAGCAGGCTCGGTGAGGGTGGCGGTAGCGCCCC
AAGAGCCACATTTTCACTTGACGGCTGGAGGGGTGTATGGTGCACTCGAA
ATTTTCCTTCCCAGAAGCAGTGAGGTAAAATTTTGAATGGTACCAAGTCT
CGCCGTGTCTGGACCAGACCGAATGGAGCAAGGCACGCAAGGTCAGGGCG
AACCCCTCTTCTCCTGCCGCATCGATAACGCTAAGGTGGTAACAGCCACA
TTGACTTGTTTAAGTAATGGCAGCAAGAAGGACCAGCTCGCGCAGGTGGA
GGTGAATGAAGATGGCATCGTCTTCATCGTCACGGGCCGGGCCAAGTTCA
CGCAGTCGCAAGGCACTATCAACAGGTCCCTCTTCCAGGCTTTTCAATGC
CAGCCCCAAGGGGGACGATTCACTGTCGATCTTAATCTGCTTTTGGAATG
TCTACAGGTATTTGGCGCAGCTTCTCTGGCGAGCACGATGCTAACCATGT
CATATGAGCCCAACCAGGCCGTCCTCCGCCTCACACTCGAAGAGCAAGGA
GTCCTGACCACGTGCGACATTCACGCGATAGAAGAAGGAGAAGACGCACT
AGACCTCGCTGCGCTTGCCTCTGCATTCCGCAGCAGCCCGGAGGTGCTTC
GCGCTATTTTGAAAAGTGAAGTGCTCAAGGAGGCTATCAGTGACTTGTCT
GACCTGCCGGGAGCAGGCTCGGTGAGGGTGGCGGTAGCGCCCCAAGAGCC
ACATTTTCACTTGACGGCTGGAGGGGTGTATGGTGCACTCGAAATTTTCC
TTCCCAGAAGCAGTGAGGTAAAATTTTGAATGGTACCAAGTCTCGCCGTG
TCTGGACCAGACCGAATGGAGCAAGGCACGCAAGGTCAGGGCGAACCCCT
CTTCTCCTGCCGCATCGATAACGCTAAGGTGGTAACAGCCACATTGACTT
GTTTAAGTAATGGCAGCAAGAAGGACCAGCTCGCGCAGGTGGAGGTGAAT
GAAGATGGCATCGTCTTCATCGTCACGGGCCGGGCCAAGTTCACGCAGTC
GCAAGGCACTATCAACAGGTCCCTCTTCCAGGCTTTTCAATGCCAGCCCC
AAGGGGGACGATTCACTGTCGATCTTAATCTGCTTTTGGAATGTCTACAG
GTATTTGGCGCAGCTTCTCTGGCGAGCACGATGCTAACCATGTCATATGA
GCCCAACCAGGCCGTCCTCCGCCTCACACTCGAAGAGCAAGGAGTCCTGA
CCACGTGCGACATTCACGCGATAGAAGAAGGAGAAGACGCACTAGACCTC
GCTGCGCTTGCCTCTGCATTCCGCAGCAGCCCGGAGGTGCTTCGCGCTAT
TTTGAAAAGTGAAGTGCTCAAGGAGGCTATCAGTGACTTGTCTGACCTGC
CGGGAGCAGGCTCGGTGAGGGTGGCGGTAGCGCCCCAAGAGCCACATTTT
CACTTGACGGCTGGAGGGGTGTATGGTGCACTCGAAATTTTCCTTCCCAG
AAGCAGTGAGGTAAAATTTTGAATGGTACCAAGTCTCGCCGTGTCTGGAC
CAGACCGAATGGAGCAAGGCACGCAAGGTCAGGGCGAACCCCTCTTCTCC
TGCCGCATCGATAACGCTAAGGTGGTAACAGCCACATTGACTTGTTTAAG
TAATGGCAGCAAGAAGGACCAGCTCGCGCAGGTGGAGGTGAATGAAGATG
GCATCGTCTTCATCGTCACGGGCCGGGCCAAGTTCACGCAGTCGCAAGGC
ACTATCAACAGGTCCCTCTTCCAGGCTTTTCAATGCCAGCCCCAAGGGGG
ACGATTCACTGTCGATCTTAATCTGCTTTTGGAATGTCTACAGGTATTTG
GCGCAGCTTCTCTGGCGAGCACGATGCTAACCATGTCATATGAGCCCAAC
CAGGCCGTCCTCCGCCTCACACTCGAAGAGCAAGGAGTCCTGACCACGTG
CGACATTCACGCGATAGAAGAAGGAGAAGACGCACTAGACCTCGCTGCGC
TTGCCTCTGCATTCCGCAGCAGCCCGGAGGTGCTTCGCGCTATTTTGAAA
AGTGAAGTGCTCAAGGAGGCTATCAGTGACTTGTCTGACCTGCCGGGAGC
AGGCTCGGTGAGGGTGGCGGTAGCGCCCCAAGAGCCACATTTTCACTTGA
CGGCTGGAGGGGTGTATGGTGCACTCGAAATTTTCCTTCCCAGAAGCAGT
GAGGTAAAATTTTGA

Synonyms

Publications