jgi.p|Nanoce1779_2|587355, mRNA_4648 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587355
Unique Name	mRNA_4648
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1727
Alignment location	scaffold_9:296836..298562 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	587441
Track	FilteredModels2
ProteinId	587355

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:296836..298562 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587355	gene_4648	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587355	mRNA_4648-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4648	CDS_4648	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:296836..298562+
coding sequence from alignment at scaffold_9:296836..298562+

mRNA sequence

>mRNA_4648 ID=mRNA_4648|Name=jgi.p|Nanoce1779_2|587355|organism=Nannochloropsis oceanica|type=mRNA|length=1727bp
GGGGAAATGGCTTGGCCCAAGGGATGATGAGAACGCTGCCATGACCTTGC
CGCGTCGAGGTCTCCGGCGATACTCGCTTTTACCTGCAGCGTCGCCTGGT
TTCACAGCCTGGTCTAAACTCTTGCCCACATTACTAAGGCAGCCCATTTG
GTTGACTTCCCTTCGCTCACCATTCGTGACGGCCTGCCTGCTGTTTGTCC
CTTCCCTGCAGTCGAGACACTTCCATCACAGCCCCACAACGAGGCCATGC
TCGACCCCTTCCAGCGCTTCTGGCAGGAGCTGCCTTTGCTCCCAGGAACC
ACGCGGCCGCCGCTCTCCGAGTACGAAGTGGAATGCTTACTGCGAGACAA
GGTGGCCCTAATTGACGGCCGGAGCAACCAAGTGGTGCACACGGGCGGGT
TGGTGATCCTGACCTCCCACCGCATCATCTGGCACTGCCAAACCCAGTCC
CGTGCATACCACGGCCATTTGTCCAAGGTCGTAGACGCTCGAAAGTCGCA
CAACATCTTCAAGCCCTCTTCGCGGGTCCATCTCTATCTACAAGGTCCTG
ATCAGCACAGGGACAAACCTGCCACCAAGATCGATTTCGTCCACGGCGGG
CGCGACGAGTTTTTGGCGCAAGTCAAGACCCTATTGCAAATGCGGGACTG
GGAAAAAGTGCCGGCGTCATCACCCACTTCAGGTTCCGGAAGATCCCCCG
CTGTCGCCGCCGCCACCGCTTCCGCCGTGCCTGTTTTTACTGCGCGCAAG
GCCGGGGTGGGAGGAATCATACGACGGCAAGAAAACACCAGGGCCGCGCA
AGACAAACTAGCAACCGAGGCTTTTGGAGATCTGCAGGCACTAATGGGCA
GGGCTCGTGAAGTGGTGAGCGTAATCGAGCGCTACGCCACGGTTCTGGCC
TCCAAGGCCGAGGGCGAGGGAGCAGGCAGCGGTAATGGTGGGGGGCAGGA
GGACGCTGAGCTGCAGGGCTTGCTTATCGACATGGGCATTTTCAATCCTG
TGACGCGTGTTTCGGCGGGCTCACTCTACCACAAAGAACTAGCCCGACAG
CTGGCACAGTTTCTCACGGGCGGCGGGAAGAGCAGTAGGGCGACCGGGGG
CATGCTTGCGGCACGGGGCGGGATGATGACATTGCATGACACATACTGCC
TCTTCAACCGGGCCCGTGGCACGGCTCTTATATCGCCCGAGGATCTCCTG
GATGCATGCGAGGAATTGGAGTCACTCCAGCTTGGCATGCGCTTGCACCG
CTTTCCCAGTGGCGTGAGTGTCGTGCAAGCCCAGGAGTTTAGCGAGCAAC
AAGTGAGTGGACAATTGCGGGCTCTAGCTGAGGCGGAGGCGGACGGTTCA
TTGACGGCATTGGACGTGGCCACCCACTTGCAGGTGTCCCTCACCTTGGC
GCAGGAGTTTCTGCGAGCGGCGGAGGCGAGGGGGCAGCTCTGTAGGGACG
AGAGCGCCCAGGGCATGCTGTTTTGGCCCAATCGTTTTCCTGATTTTATC
GAAAGCACTCATCAGGGAGCGAACGACGCGCATTAGTAGGACCACCAAAG
AAAGAAAATGCGACGAGTGTAAAAAATCTTTGACAAAAATGAGTAGAGGA
CGAAGAAAGATACTATAGTTGGTCCGTCGGCTGGCAAAGCAAACACATAG
ATCTGCCAGCCCGTCTGTAGAGCGCGTTTTGTGTAGTAACGACTGTCTCG
GAAAGAAGTGACGAGCACAACTTTCAC

protein sequence of jgi.p|Nanoce1779_2|587355

>mRNA_4648-protein ID=mRNA_4648-protein|Name=jgi.p|Nanoce1779_2|587355|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MLDPFQRFWQELPLLPGTTRPPLSEYEVECLLRDKVALIDGRSNQVVHTG
GLVILTSHRIIWHCQTQSRAYHGHLSKVVDARKSHNIFKPSSRVHLYLQG
PDQHRDKPATKIDFVHGGRDEFLAQVKTLLQMRDWEKVPASSPTSGSGRS
PAVAAATASAVPVFTARKAGVGGIIRRQENTRAAQDKLATEAFGDLQALM
GRAREVVSVIERYATVLASKAEGEGAGSGNGGGQEDAELQGLLIDMGIFN
PVTRVSAGSLYHKELARQLAQFLTGGGKSSRATGGMLAARGGMMTLHDTY
CLFNRARGTALISPEDLLDACEELESLQLGMRLHRFPSGVSVVQAQEFSE
QQVSGQLRALAEAEADGSLTALDVATHLQVSLTLAQEFLRAAEARGQLCR
DESAQGMLFWPNRFPDFIESTHQGANDAH*

mRNA from alignment at scaffold_9:296836..298562+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4648 ID=mRNA_4648|Name=jgi.p|Nanoce1779_2|587355|organism=Nannochloropsis oceanica|type=mRNA|length=1727bp|location=Sequence derived from alignment at scaffold_9:296836..298562+ (Nannochloropsis oceanica)
GGGGAAATGGCTTGGCCCAAGGGATGATGAGAACGCTGCCATGACCTTGC
CGCGTCGAGGTCTCCGGCGATACTCGCTTTTACCTGCAGCGTCGCCTGGT
TTCACAGCCTGGTCTAAACTCTTGCCCACATTACTAAGGCAGCCCATTTG
GTTGACTTCCCTTCGCTCACCATTCGTGACGGCCTGCCTGCTGTTTGTCC
CTTCCCTGCAGTCGAGACACTTCCATCACAGCCCCACAACGAGGCCATGC
TCGACCCCTTCCAGCGCTTCTGGCAGGAGCTGCCTTTGCTCCCAGGAACC
ACGCGGCCGCCGCTCTCCGAGTACGAAGTGGAATGCTTACTGCGAGACAA
GGTGGCCCTAATTGACGGCCGGAGCAACCAAGTGGTGCACACGGGCGGGT
TGGTGATCCTGACCTCCCACCGCATCATCTGGCACTGCCAAACCCAGTCC
CGTGCATACCACGGCCATTTGTCCAAGGTCGTAGACGCTCGAAAGTCGCA
CAACATCTTCAAGCCCTCTTCGCGGGTCCATCTCTATCTACAAGGTCCTG
ATCAGCACAGGGACAAACCTGCCACCAAGATCGATTTCGTCCACGGCGGG
CGCGACGAGTTTTTGGCGCAAGTCAAGACCCTATTGCAAATGCGGGACTG
GGAAAAAGTGCCGGCGTCATCACCCACTTCAGGTTCCGGAAGATCCCCCG
CTGTCGCCGCCGCCACCGCTTCCGCCGTGCCTGTTTTTACTGCGCGCAAG
GCCGGGGTGGGAGGAATCATACGACGGCAAGAAAACACCAGGGCCGCGCA
AGACAAACTAGCAACCGAGGCTTTTGGAGATCTGCAGGCACTAATGGGCA
GGGCTCGTGAAGTGGTGAGCGTAATCGAGCGCTACGCCACGGTTCTGGCC
TCCAAGGCCGAGGGCGAGGGAGCAGGCAGCGGTAATGGTGGGGGGCAGGA
GGACGCTGAGCTGCAGGGCTTGCTTATCGACATGGGCATTTTCAATCCTG
TGACGCGTGTTTCGGCGGGCTCACTCTACCACAAAGAACTAGCCCGACAG
CTGGCACAGTTTCTCACGGGCGGCGGGAAGAGCAGTAGGGCGACCGGGGG
CATGCTTGCGGCACGGGGCGGGATGATGACATTGCATGACACATACTGCC
TCTTCAACCGGGCCCGTGGCACGGCTCTTATATCGCCCGAGGATCTCCTG
GATGCATGCGAGGAATTGGAGTCACTCCAGCTTGGCATGCGCTTGCACCG
CTTTCCCAGTGGCGTGAGTGTCGTGCAAGCCCAGGAGTTTAGCGAGCAAC
AAGTGAGTGGACAATTGCGGGCTCTAGCTGAGGCGGAGGCGGACGGTTCA
TTGACGGCATTGGACGTGGCCACCCACTTGCAGGTGTCCCTCACCTTGGC
GCAGGAGTTTCTGCGAGCGGCGGAGGCGAGGGGGCAGCTCTGTAGGGACG
AGAGCGCCCAGGGCATGCTGTTTTGGCCCAATCGTTTTCCTGATTTTATC
GAAAGCACTCATCAGGGAGCGAACGACGCGCATTAGTAGGACCACCAAAG
AAAGAAAATGCGACGAGTGTAAAAAATCTTTGACAAAAATGAGTAGAGGA
CGAAGAAAGATACTATAGTTGGTCCGTCGGCTGGCAAAGCAAACACATAG
ATCTGCCAGCCCGTCTGTAGAGCGCGTTTTGTGTAGTAACGACTGTCTCG
GAAAGAAGTGACGAGCACAACTTTCAC

Coding sequence (CDS) from alignment at scaffold_9:296836..298562+

>mRNA_4648 ID=mRNA_4648|Name=jgi.p|Nanoce1779_2|587355|organism=Nannochloropsis oceanica|type=CDS|length=1290bp|location=Sequence derived from alignment at scaffold_9:296836..298562+ (Nannochloropsis oceanica)
ATGCTCGACCCCTTCCAGCGCTTCTGGCAGGAGCTGCCTTTGCTCCCAGG
AACCACGCGGCCGCCGCTCTCCGAGTACGAAGTGGAATGCTTACTGCGAG
ACAAGGTGGCCCTAATTGACGGCCGGAGCAACCAAGTGGTGCACACGGGC
GGGTTGGTGATCCTGACCTCCCACCGCATCATCTGGCACTGCCAAACCCA
GTCCCGTGCATACCACGGCCATTTGTCCAAGGTCGTAGACGCTCGAAAGT
CGCACAACATCTTCAAGCCCTCTTCGCGGGTCCATCTCTATCTACAAGGT
CCTGATCAGCACAGGGACAAACCTGCCACCAAGATCGATTTCGTCCACGG
CGGGCGCGACGAGTTTTTGGCGCAAGTCAAGACCCTATTGCAAATGCGGG
ACTGGGAAAAAGTGCCGGCGTCATCACCCACTTCAGGTTCCGGAAGATCC
CCCGCTGTCGCCGCCGCCACCGCTTCCGCCGTGCCTGTTTTTACTGCGCG
CAAGGCCGGGGTGGGAGGAATCATACGACGGCAAGAAAACACCAGGGCCG
CGCAAGACAAACTAGCAACCGAGGCTTTTGGAGATCTGCAGGCACTAATG
GGCAGGGCTCGTGAAGTGGTGAGCGTAATCGAGCGCTACGCCACGGTTCT
GGCCTCCAAGGCCGAGGGCGAGGGAGCAGGCAGCGGTAATGGTGGGGGGC
AGGAGGACGCTGAGCTGCAGGGCTTGCTTATCGACATGGGCATTTTCAAT
CCTGTGACGCGTGTTTCGGCGGGCTCACTCTACCACAAAGAACTAGCCCG
ACAGCTGGCACAGTTTCTCACGGGCGGCGGGAAGAGCAGTAGGGCGACCG
GGGGCATGCTTGCGGCACGGGGCGGGATGATGACATTGCATGACACATAC
TGCCTCTTCAACCGGGCCCGTGGCACGGCTCTTATATCGCCCGAGGATCT
CCTGGATGCATGCGAGGAATTGGAGTCACTCCAGCTTGGCATGCGCTTGC
ACCGCTTTCCCAGTGGCGTGAGTGTCGTGCAAGCCCAGGAGTTTAGCGAG
CAACAAGTGAGTGGACAATTGCGGGCTCTAGCTGAGGCGGAGGCGGACGG
TTCATTGACGGCATTGGACGTGGCCACCCACTTGCAGGTGTCCCTCACCT
TGGCGCAGGAGTTTCTGCGAGCGGCGGAGGCGAGGGGGCAGCTCTGTAGG
GACGAGAGCGCCCAGGGCATGCTGTTTTGGCCCAATCGTTTTCCTGATTT
TATCGAAAGCACTCATCAGGGAGCGAACGACGCGCATTAG

Synonyms

Publications