Properties
| Property Name | Value |
|---|
| TranscriptId | 589283 |
| Track | FilteredModels2 |
| ProteinId | 589197 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:652424..656624 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4461 ID=mRNA_4461|Name=jgi.p|Nanoce1779_2|589197|organism=Nannochloropsis oceanica|type=mRNA|length=3827bp
CGTACTGATCGTCTTCGTACTATGTGCATGCATGAAGATGTTTAAAGTTA
TTTGGTGGGATGTCACTTCGTCGTGGAGTTATGGTGAGAAATTACAAAAC
CGATCAAAAGCTCTTCAGCTCGGAATGCGGCCTCAAATGCACTTTTAGTT
CCTCACAATTTGTCACTGCATCAAGTATTCCATGCTGTTGCACGGATGTA
AAGCGTTTCAACTGATGCTTGAGAATGCTGATCTATCCTTCACACATGTA
GGAATCCATAAATGATTTATTTCTGTCCTGCCACCTTCAGTGTCCCTCGG
ATACTCCTATCCTAATGAATTTTTGGTTGCCCTTGTGTCTGACGCTACAC
GACACTTCACAGACTCCAGCGTGCACTCCCTCTCCAAGACGATATGTGGC
CTATTCTCTTCGTCTGCATCTTTTTCATGGGATCTTCTCATGGTACGTAG
CTACTCCACTACGGTATGGTATCGATCGATCTTCGAGTGTATCGAAGAGG
TCCACCTTCCTTTTTGCTGTCCAACATTCACCTTTTTGACTCTTGTCCTA
GCTACCGGGCACAACACAGAGAGACACTTGAAATGCATACCTTTATTGGG
TTGTCGAATGGGGGGGCCCGCTTCTTGGGCGAACGCCCCAGCTCACGCTT
TAGAATCCCCCTAGGCATTTCCCAGTAGCCCCTCAAAGCATTCACTAAGC
ACTGCTCCTTACACGCCACCACAAACTTCTCACGTTAGCCAACTATATTC
GACTCATATAATGCCCATGCAAGAATTCTAGTGTCTCGTTATAATGGACA
TGTTGCCCTTGTGACTTCCCTTCTTCCGAGCCCCCTTTCAAGATCGATCC
TACGTTCCTACCGTACACATATTTAAATTCACATTTCCTACACTTTGATC
CCCAGCCACCGATCGCATGGTGATGCTCAATATGGTCACGGATCCGGGCC
TGCAGCCCAAGAGTGCCAAAGTTGTGTTCAACAATGGCGTGTCTGGTGAC
ATACGCATGACCCAATCCGACTACAAGAGCCCTTTGGAGATAAAGCTGAA
TCTTAAGGACCTGACGGACTCGGTGGGGCCGTGGCACATCCACCGCCTGC
CTGTCGTGAGCGATTGCTCGGCCAATAGCACGTCTGGGCACTACAACCCA
TTCGCCGTCAGTGCCACCTACAAGGCCTGCAAGGACGCAGCTGCGTGCGA
GGCGGGCGATTTGTCCACCAAGTTCGGTCCCTTGACGGGAGGAGACGTGC
AGAGAGCAGTCACTGACCCAAAGCTAACGCTTTTTGGGTTCAACAGCATC
ATGGGACGCTCGGTGGTGATTCACAACCAAGACGGGATCCGCATTGCTTG
CGGCACTATCAAATATGAAGACGAGGAAGTGGCCATGGCTACGGCCGAAT
TCAAGACGGGTCCTTACGTGGGCAAGGCCATTTTCAGCCAGCCCAAGGAC
AACAACCAGGCCGACACGCAGATTTTTATGGACCTGAAAATGGCGGAGGG
TGTAGCAGCTCCCACCGCTCCTGTGGCCTTCGCTGTCTTCGACGCACCAT
GCGGCAGTGAAGGGGCAAAGCTCTTAAATCCAGGTGATTTGCAGGCCTGC
AAGCAATTTGAAAACACCTCTCCCTTCAAACCATGCGCGTTGGGTGACCT
CTCCGGCCGACATGGAAAGTTGACCCTGCCCATGACAGGCGGGCAGGCGA
TGTTCATCACGGACTATCTGTCTCTTTCCAAGGAGGGAAGCGTGATGGGC
ATGTCGTTGGTGGTGGAGGCCAGCGGGGCTACTCCTGCTGCCTGCGCTGA
TATTGTGCCCGCACGTCCCACTCTCAGAACGCTGCTACGGGTTTCATCTT
GAGAAGATTTGTTATCTAGCGATGTATATACACATGAACTCTTGAAATGT
TTGAGGTGGGAGGGGGGGGAGTACGAAACGGTTTAATTATAATCGAGGAG
AATCAAAGATTTCCCGAAACATTAATGAAGGCATCGTCGCTTGATTAAAT
GGACAGCGACTTCTTGTTTTCCTTTCCTCTTTCCTACCTCTTACTCGACT
CCTATTCTCACCCTCCCCAATTTTGTCCCTCGCTCTCTCCCTGAAAGCAG
GAGAAAGAGACCCCATAAAACAAATTCGAATGCTTCATTACCTCCCCTCC
ACTCCATCTCTCTCTATATTTTTCTCTTCATTCTTCCCTCTATATAAACT
CTTCGGCGCCAAGGACGAGGCCGTGCACCTCATTGAGAACCAACAACAAA
CCTGGAAACCATTTCTCCTTTCCTCTATCACTCCCTCCATCCACTCATAC
GCACCCACTCTCCCTCTTCCTTTAAACGCAAAAGGTACCAAATGATCCTT
TTTTAATGGCGTGAAAATCGTAAAAGGTGTCACTAATTCGATTGCCCGGG
GCAGTGGCTCTTGCATTTTCACCATTCAATCACATTGATCTCGCTCGGAA
CGTAATTTTCCACCGCCGCACCCACATGGCCCTCAGGAAGGTGCCAGTCA
CTCAGGAAATTGTATATCTCATTGGAACCTTTACTTTGATAAGGTTGTGT
GCTTAATTAATGCCCTGTCTTTCCTAAACTGCAACTTATTTTCGTCAAGG
CAGGCCCAAAGGCAAAAGAGATCTGGGGGGGCATTGAAGCTCTTTGTCTA
AACGTCGCGCCTGTGGGTACTGCATGATCAATGATGAACTTATTCTTATC
CATTTCACGACAAAGATTCCCCACCGCCTACTTCGGTAAACATATAAATT
CTGCTATCGTAGTCATGATGCAGGGAAACCTCGTCGGCAGCACCTTGGTG
CTCGTTGCTTGGAGCTACGTAATTGGACCCCGGTCCGTCCTAGCGCAGGG
TAACAATAATCAGATTGACCCTTATGGGGGCAACTATGGGGATGGGAACA
GGGGCCAAGGGGCGTACACGCCCGTGCCCTCTCCTACGTACGGTGGCAAT
GACGAAGAGCAAGGAGGAGGCAAACCGTCCCCTGCGCCTACTCCACGTCC
CACGCCTGCCCCTACGCCCGCCTCTGTGTCGGCTCTCACTTCATCCAATG
CCGCTTCGGCGTTGAAGGTAGAGCTTATCAATAACAACTCTTGGACTGAC
GCGACTTCAGGAAAGAAGTTTGAGCAAAATAATTATCTGTTGCGAAATAC
TGGGGATCGAGACGTGTGTGGCATGGTAATGACTGCTCCCCTTAACTCGA
ATTTGACCAAGGGAAGTAATGTCACCCGTCGGCCGCCATTTTATAGCTCT
TACAATGTTCAGTCTTGTAATGTATCGGCTGGACAAATGGAACTTCGTTT
TCCGACTTGGGCGGACATTGTCTATAAAAAAGGTGGGGTCGTTCCGTTTG
GATACATTATTCATGGCTACTGGAATGGGAGTGCCACGGAGGGTCCCGCC
ACGGTCGAACACGCTCGTTTCTGCGATGATGGTGACAATGAGACCGGCAA
TGGGCGCATGTTGCGTTTGCGACGGGATTTTTATGAGCGACGGCACCATC
ACCGCAAGTTGGAGGAGGAGAAGCGTGCCTAGGAGTACGGAAAGATAGCG
TTGGCCTCTGACAGAAGATTTTGCAATTTTACATGAAAAGAAGAGGATTC
GCAAACAAAAAAGACACTTGGAGGATAACTTAAGACACAAAGTAAAGATG
TGGCTGTGCGCAGCGTCAAGAAGCTATTCTGCTCCATTGCGACGCGTTTT
GGGATGGATCATGAGCATCCGCTCAAACGAAGTGTCAAGGTGACAATTCA
ATCCTGCGGAACGATCATGACGATGCGTCCATTCGAAGAAAAAAGACTTG
AAGGTTGCAATAACTTGTACCTGGAAA back to topprotein sequence of jgi.p|Nanoce1779_2|589197 >mRNA_4461-protein ID=mRNA_4461-protein|Name=jgi.p|Nanoce1779_2|589197|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MVMLNMVTDPGLQPKSAKVVFNNGVSGDIRMTQSDYKSPLEIKLNLKDLT
DSVGPWHIHRLPVVSDCSANSTSGHYNPFAVSATYKACKDAAACEAGDLS
TKFGPLTGGDVQRAVTDPKLTLFGFNSIMGRSVVIHNQDGIRIACGTIKY
EDEEVAMATAEFKTGPYVGKAIFSQPKDNNQADTQIFMDLKMAEGVAAPT
APVAFAVFDAPCGSEGAKLLNPGDLQACKQFENTSPFKPCALGDLSGRHG
KLTLPMTGGQAMFITDYLSLSKEGSVMGMSLVVEASGATPAACADIVPAR
PTLRTLLRVSS* back to topmRNA from alignment at scaffold_10:652424..656624+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4461 ID=mRNA_4461|Name=jgi.p|Nanoce1779_2|589197|organism=Nannochloropsis oceanica|type=mRNA|length=4201bp|location=Sequence derived from alignment at scaffold_10:652424..656624+ (Nannochloropsis oceanica)
CGTACTGATCGTCTTCGTACTATGTGCATGCATGAAGATGTTTAAAGTTA
TTTGGTGGGATGTCACTTCGTCGTGGAGTTATGGTGAGAAATTACAAAAC
CGATCAAAAGCTCTTCAGCTCGGAATGCGGCCTCAAATGCACTTTTAGTT
CCTCACAATTTGTCACTGCATCAAGTATTCCATGCTGTTGCACGGATGTA
AAGCGTTTCAACTGATGCTTGAGAATGCTGATCTATCCTTCACACATGTA
GGAATCCATAAATGATTTATTTCTGTCCTGCCACCTTCAGTGTCCCTCGG
ATACTCCTATCCTAATGAATTTTTGGTTGCCCTTGTGTCTGACGCTACAC
GACACTTCACAGACTCCAGCGTGCACTCCCTCTCCAAGACGATATGTGGC
CTATTCTCTTCGTCTGCATCTTTTTCATGGGATCTTCTCATGGTACGTAG
CTACTCCACTACGGTATGGTATCGATCGATCTTCGAGTGTATCGAAGAGG
TCCACCTTCCTTTTTGCTGTCCAACATTCACCTTTTTGACTCTTGTCCTA
GCTACCGGGCACAACACAGAGAGACACTTGAAATGCATACCTTTATTGGG
TTGTCGAATGGGGGGGCCCGCTTCTTGGGCGAACGCCCCAGCTCACGCTT
TAGAATCCCCCTAGGCATTTCCCAGTAGCCCCTCAAAGCATTCACTAAGC
ACTGCTCCTTACACGCCACCACAAACTTCTCACGTTAGCCAACTATATTC
GACTCATATAATGCCCATGCAAGAATTCTAGTGTCTCGTTATAATGGACA
TGTTGCCCTTGTGACTTCCCTTCTTCCGAGCCCCCTTTCAAGATCGATCC
TACGTTCCTACCGTACACATATTTAAATTCACATTTCCTACACTTTGATC
CCCAGCCACCGATCGCATGGTGATGCTCAATATGGTCACGGATCCGGGCC
TGCAGCCCAAGAGTGCCAAAGTTGTGTTCAACAATGGCGTGTCTGGTGAC
ATACGCATGACCCAATCCGACTACAAGAGCCCTTTGGAGATAAAGCTGAA
TCTTAAGGACCTGACGGACTCGGTGGGGCCGTGGCACATCCACCGCCTGC
CTGTCGTGAGCGATTGCTCGGCCAATAGCACGTCTGGGCACTACAACCCA
TTCGCCGTCAGTGCCACCTACAAGGCCTGCAAGGACGCAGCTGCGTGCGA
GGCGGGCGATTTGTCCACCAAGTTCGGTCCCTTGACGGGAGGAGACGTGC
AGAGAGCAGTCACTGACCCAAAGCTAACGCTTTTTGGGTTCAACAGGTGA
GGAAGGAGAAGGCGATGGGGGAGTCTTTTCTCCGGAAAAAGCGCGTTGCT
TACTTTTTTGCTCGCGTCACGGTGGACTATCTTTTCCGTCAGCGCGCTGT
CTGCCTTCTGTCTGTCTGCTCAATCTCTCCCTTACGCTTCTTTGCCGTTT
CAACGCATTCATCTTTTTCTTTTTCCTTCCTCCTATTCAAAGCATCATGG
GACGCTCGGTGGTGATTCACAACCAAGACGGGATCCGCATTGCTTGCGGC
ACTATCAAATATGAAGACGAGGAAGTGGCCATGGCTACGGCCGAATTCAA
GACGGGTCCTTACGTGGGCAAGGCCATTTTCAGCCAGCCCAAGGACAACA
ACCAGGCCGACACGCAGATTTTTATGGACCTGAAAATGGCGGAGGGTGTA
GCAGCTCCCACCGCTCCTGTGGCCTTCGCTGTCTTCGACGCACCATGCGG
CAGTGAAGGGGCAAAGCTCTTAAATCCAGGTGATTTGCAGGCCTGCAAGC
AATTTGAAAACACCTCTCCCTTCAAACCATGCGCGTTGGGTGACCTCTCC
GGCCGACATGGAAAGTTGACCCTGCCCATGACAGGCGGGCAGGCGATGTT
CATCACGGACTATCTGTCTCTTTCCAAGGAGGGAAGCGTGATGGGCATGT
CGTTGGTGGTGGAGGCCAGCGGGGCTACTCCTGCTGCCTGCGCTGATATT
GTGCCCGCACGTCCCACTCTCAGAACGCTGCTACGGGTTTCATCTTGAGA
AGATTTGTTATCTAGCGATGTATATACACATGAACTCTTGAAATGTTTGA
GGTGGGAGGGGGGGGAGTACGAAACGGTTTAATTATAATCGAGGAGAATC
AAAGATTTCCCGAAACATTAATGAAGGCATCGTCGCTTGATTAAATGGAC
AGCGACTTCTTGTTTTCCTTTCCTCTTTCCTACCTCTTACTCGACTCCTA
TTCTCACCCTCCCCAATTTTGTCCCTCGCTCTCTCCCTGAAAGCAGGAGA
AAGAGACCCCATAAAACAAATTCGAATGCTTCATTACCTCCCCTCCACTC
CATCTCTCTCTATATTTTTCTCTTCATTCTTCCCTCTATATAAACTCTTC
GGCGCCAAGGACGAGGCCGTGCACCTCATTGAGAACCAACAACAAACCTG
GAAACCATTTCTCCTTTCCTCTATCACTCCCTCCATCCACTCATACGCAC
CCACTCTCCCTCTTCCTTTAAACGCAAAAGGTACCAAATGATCCTTTTTT
AATGGCGTGAAAATCGTAAAAGGTGTCACTAATTCGATTGCCCGGGGCAG
TGGCTCTTGCATTTTCACCATTCAATCACATTGATCTCGCTCGGAACGTA
ATTTTCCACCGCCGCACCCACATGGCCCTCAGGAAGGTGCCAGTCACTCA
GGAAATTGTATATCTCATTGGAACCTTTACTTTGATAAGGTTGTGTGCTT
AATTAATGCCCTGTCTTTCCTAAACTGCAACTTATTTTCGTCAAGGCAGG
CCCAAAGGCAAAAGAGATCTGGGGGGGCATTGAAGCTCTTTGTCTAAACG
TCGCGCCTGTGGGTACTGCATGATCAATGATGAACTTATTCTTATCCATT
TCACGACAAAGATTCCCCACCGCCTACTTCGGTAAACATATAAATTCTGC
TATCGTAGTCATGATGCAGGGAAACCTCGTCGGCAGCACCTTGGTGCTCG
TTGCTTGGAGCTACGTAATTGGACCCCGGTCCGTCCTAGCGCAGGGTAAC
AATAATCAGATTGACCCTTATGGGGGCAACTATGGGGATGGGAACAGGGG
CCAAGGGGCGTACACGCCCGTGCCCTCTCCTACGTACGGTGGCAATGACG
AAGAGCAAGGTGAGTAAAACGGGATGGAGCTAGGATGGGAGGGGGAAATA
TTTGTGTGAGAGAGAGCGATGTGGCGTGCGTGTCCCCGCTATTTCATTGG
GCAATCCATTCAATCGAAATCCACCTCAATTCTCATTTTTTGATCTCCCC
CCCTTCCTCATTTTTTTTTTCAACTCGTTCCCTGCAGGAGGAGGCAAACC
GTCCCCTGCGCCTACTCCACGTCCCACGCCTGCCCCTACGCCCGCCTCTG
TGTCGGCTCTCACTTCATCCAATGCCGCTTCGGCGTTGAAGGTAGAGCTT
ATCAATAACAACTCTTGGACTGACGCGACTTCAGGAAAGAAGTTTGAGCA
AAATAATTATCTGTTGCGAAATACTGGGGATCGAGACGTGTGTGGCATGG
TAATGACTGCTCCCCTTAACTCGAATTTGACCAAGGGAAGTAATGTCACC
CGTCGGCCGCCATTTTATAGCTCTTACAATGTTCAGTCTTGTAATGTATC
GGCTGGACAAATGGAACTTCGTTTTCCGACTTGGGCGGACATTGTCTATA
AAAAAGGTGGGGTCGTTCCGTTTGGATACATTATTCATGGCTACTGGAAT
GGGAGTGCCACGGAGGGTCCCGCCACGGTCGAACACGCTCGTTTCTGCGA
TGATGGTGACAATGAGACCGGCAATGGGCGCATGTTGCGTTTGCGACGGG
ATTTTTATGAGCGACGGCACCATCACCGCAAGTTGGAGGAGGAGAAGCGT
GCCTAGGAGTACGGAAAGATAGCGTTGGCCTCTGACAGAAGATTTTGCAA
TTTTACATGAAAAGAAGAGGATTCGCAAACAAAAAAGACACTTGGAGGAT
AACTTAAGACACAAAGTAAAGATGTGGCTGTGCGCAGCGTCAAGAAGCTA
TTCTGCTCCATTGCGACGCGTTTTGGGATGGATCATGAGCATCCGCTCAA
ACGAAGTGTCAAGGTGACAATTCAATCCTGCGGAACGATCATGACGATGC
GTCCATTCGAAGAAAAAAGACTTGAAGGTTGCAATAACTTGTACCTGGAA
A back to topCoding sequence (CDS) from alignment at scaffold_10:652424..656624+ >mRNA_4461 ID=mRNA_4461|Name=jgi.p|Nanoce1779_2|589197|organism=Nannochloropsis oceanica|type=CDS|length=1872bp|location=Sequence derived from alignment at scaffold_10:652424..656624+ (Nannochloropsis oceanica)
ATGGTGATGCTCAATATGGTCACGGATCCGGGCCTGCAGCCCAAGAGTGC
CAAAGTTGTGTTCAACAATGGCGTGTCTGGTGACATACGCATGACCCAAT
CCGACTACAAGAGCCCTTTGGAGATAAAGCTGAATCTTAAGGACCTGACG
GACTCGGTGGGGCCGTGGCACATCCACCGCCTGCCTGTCGTGAGCGATTG
CTCGGCCAATAGCACGTCTGGGCACTACAACCCATTCGCCGTCAGTGCCA
CCTACAAGGCCTGCAAGGACGCAGCTGCGTGCGAGGCGGGCGATTTGTCC
ACCAAGTTCGGTCCCTTGACGGGAGGAGACGTGCAGAGAGCAGTCACTGA
CCCAAAGCTAACGCTTTTTGGGTTCAACAGCATCATGGGACGCTCGGTGG
TGATTCACAACCAAGACGGGATCCGCATTGCTTGCGGCACTATCAAATAT
GAAGACGAGGAAGTGGCCATGGCTACGGCCGAATTCAAGACGGGTCCTTA
CGTGGGCAAGGCCATTTTCAGCCAGCCCAAGGACAACAACCAGGCCGACA
CGCAGATTTTTATGGACCTGAAAATGGCGGAGGGTGTAGCAGCTCCCACC
GCTCCTGTGGCCTTCGCTGTCTTCGACGCACCATGCGGCAGTGAAGGGGC
AAAGCTCTTAAATCCAGGTGATTTGCAGGCCTGCAAGCAATTTGAAAACA
CCTCTCCCTTCAAACCATGCGCGTTGGGTGACCTCTCCGGCCGACATGGA
AAGTTGACCCTGCCCATGACAGGCGGGCAGGCGATGTTCATCACGGACTA
TCTGTCTCTTTCCAAGGAGGGAAGCGTGATGGGCATGTCGTTGGTGGTGG
AGGCCAGCGGGGCTACTCCTGCTGCCTGCGCTGATATTGTGCCCGCACGT
CCCACTCTCAGAACGCTGCTACGGGTTTCATCTTGAATGGTGATGCTCAA
TATGGTCACGGATCCGGGCCTGCAGCCCAAGAGTGCCAAAGTTGTGTTCA
ACAATGGCGTGTCTGGTGACATACGCATGACCCAATCCGACTACAAGAGC
CCTTTGGAGATAAAGCTGAATCTTAAGGACCTGACGGACTCGGTGGGGCC
GTGGCACATCCACCGCCTGCCTGTCGTGAGCGATTGCTCGGCCAATAGCA
CGTCTGGGCACTACAACCCATTCGCCGTCAGTGCCACCTACAAGGCCTGC
AAGGACGCAGCTGCGTGCGAGGCGGGCGATTTGTCCACCAAGTTCGGTCC
CTTGACGGGAGGAGACGTGCAGAGAGCAGTCACTGACCCAAAGCTAACGC
TTTTTGGGTTCAACAGCATCATGGGACGCTCGGTGGTGATTCACAACCAA
GACGGGATCCGCATTGCTTGCGGCACTATCAAATATGAAGACGAGGAAGT
GGCCATGGCTACGGCCGAATTCAAGACGGGTCCTTACGTGGGCAAGGCCA
TTTTCAGCCAGCCCAAGGACAACAACCAGGCCGACACGCAGATTTTTATG
GACCTGAAAATGGCGGAGGGTGTAGCAGCTCCCACCGCTCCTGTGGCCTT
CGCTGTCTTCGACGCACCATGCGGCAGTGAAGGGGCAAAGCTCTTAAATC
CAGGTGATTTGCAGGCCTGCAAGCAATTTGAAAACACCTCTCCCTTCAAA
CCATGCGCGTTGGGTGACCTCTCCGGCCGACATGGAAAGTTGACCCTGCC
CATGACAGGCGGGCAGGCGATGTTCATCACGGACTATCTGTCTCTTTCCA
AGGAGGGAAGCGTGATGGGCATGTCGTTGGTGGTGGAGGCCAGCGGGGCT
ACTCCTGCTGCCTGCGCTGATATTGTGCCCGCACGTCCCACTCTCAGAAC
GCTGCTACGGGTTTCATCTTGA back to top
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