jgi.p|Nanoce1779_2|589197, gene_4461 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589197
Unique Namegene_4461
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_10:652424..656624 +

Link to JBrowse

Properties
Property NameValue
TranscriptId589283
ProteinId589197
Product nameSuperoxide dismutase, copper/zinc binding domain-containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:652424..656624 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006801superoxide metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL021ncniL021Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00950NO09G00950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589197mRNA_4461-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589197mRNA_4461Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|589197

>mRNA_4461-protein ID=mRNA_4461-protein|Name=jgi.p|Nanoce1779_2|589197|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MVMLNMVTDPGLQPKSAKVVFNNGVSGDIRMTQSDYKSPLEIKLNLKDLT
DSVGPWHIHRLPVVSDCSANSTSGHYNPFAVSATYKACKDAAACEAGDLS
TKFGPLTGGDVQRAVTDPKLTLFGFNSIMGRSVVIHNQDGIRIACGTIKY
EDEEVAMATAEFKTGPYVGKAIFSQPKDNNQADTQIFMDLKMAEGVAAPT
APVAFAVFDAPCGSEGAKLLNPGDLQACKQFENTSPFKPCALGDLSGRHG
KLTLPMTGGQAMFITDYLSLSKEGSVMGMSLVVEASGATPAACADIVPAR
PTLRTLLRVSS*
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Synonyms
Publications