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Properties
| Property Name | Value |
|---|
| TranscriptId | 589253 |
| Track | FilteredModels2 |
| ProteinId | 589167 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:625430..627873 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4449 ID=mRNA_4449|Name=jgi.p|Nanoce1779_2|589167|organism=Nannochloropsis oceanica|type=mRNA|length=2016bp
AGGTAGACACGCATCGCTGTCCTATCCACTATGCCAAGAGGAAGGACGGC
GGTGCCCTATTCATATGGGATGCTGCTGTTGTTGTTGTTAGGAGTAATGG
AACTCGTGCCGGCGGAGCCCGGCAAATGGGGCAAATCGGCAGTCTTCGTC
AAGGGACAGTGGACGCCATTCGACGAGAACGACGAGGCTGGCGTGCCACA
ACCTTATCCACCACGGACGGACTCGTGGATGCAGAATGACACAAGCATCA
TGGTCTCCATCTCCTCATTTCGGGATTACCGGTGCCCCAAGACGCTCTAC
AACCTTTTTACCAAAGCCACCAACCCCAACCGCGTCTTCGCAGGTGTTGT
TCAGCAAAACAGCCACGATGACGCCGACTGCCTCTATGGCTATTGCGAGA
TGATCAAAGAAGAACGTGGACTTGAGCCGAAAACGCCCGCAACAGGACCG
GCAGCCAAGGTCTTGGAGAATTGCCCTCACGCAGATCAAGTTAGGATGCT
GCGCGTGTCTAGTGAAGATGCCAAAGGGCCAACATATGGGCGGTATCTAG
GGAGCAAGCTGCTGGGCAGTGAGGAATTTTGCATGCAAATCGATGCGCAT
ATGGATTTCGAGGATGACTGGGATAAGCAGCTTTTGGACATGTGGGGACT
GACGAACAATGAGTACGGCGTGCTCACCACCTATGTGCCCAACTTCGACC
AGCTCCACCTCAACCTCAATAACCGATATGAAGTCCCGCAGATCTGTAAA
GTTCTGTACACAAAGCCCGAAAACATGGTTCGTAACGAACAAGCGACAAA
TTGCATTTGGCTGAGCAAACCCAAGCTGACGGCATCGTGGGCGGCAGGCT
TTTCGTTTAACAAGTGCCACGCGGATTTGAAGGCGCCGTATGACCCGCAT
CTACCCTCCTTGTTCGACGGCGAGGAGTATTCGAAATATGCAAGGATGTG
GACACGGTACGTCAATCCCTCTTCATTTTGACACTTCATACGAAGTCCTG
TTCTCCCTCCTCTGCCCCCCACCTCCCCCCCCCTGTCCGAGTGCAAGTAA
AGTATATACCTTTTTAACCCCTTCTCTCTTAATCCCCGTTTCTACCCCAG
TGGCTACGATACCTACACGCCGCACCGAAGCATCGTCTACCACGACTATA
CCCATGGTCCACAGACCAAGCGCGCCAACGCGTGGTCTCGGAAACATCGC
GAGCTAAAACGTTCGCATGACAGGCTCCGCACCCTCCTCGGTGATCCCGA
CGCGCATATCAAGAGAGATACGCCTGAGGCGAAAGAGATGTTGGGGAGGT
GGGATTTGGGTGAAAAGAGGAGTTTAAACCAATTGATTGCGTTCACGGGG
GTTGATACTCGGAATTCTAAGATTGATTTTGATAATTGTGGGAAATTGCA
GTGGGTGCCCTTTGAGGAGGGGGAGGACGATGATTGGTACGTGGAAGATA
GGAGGGAGGCCCAGGCCAAGGCGAAGAGAATATCGGATAAAACTAGGGCG
CTCGCGGGCATGAGGGGGAAGCGGGTTTCAGATAAGAAGGGGAGAGGGTC
GAAGGGCAGCATCACTGGTGGACAAGCACGGCATGGTGCAGGCGGTGTGC
ATGGATTGGACGAGCGCCTGGCGATTCCTGAAGGGGGTGGAGCTGTGTTT
ATTTTGGCGATATGTTTGATTGCTTTTGCGGCAGTGGTTTGCGCGTGCAT
CTACACGGGTAGAGTACTGCGGTTCCCTGAGGGAAAACTTGAAAAGGGGG
GATGGGAAGGAGGGAGGGCATGGGAAGGGGTAGATGCAGGATTGCTGGCT
GACTTTGGGGGGCTGGGAAGCAAGGTCGTAAAGATGATATAACGAAGAAT
GTATTTGTGCGTATTTTGTTTGTAGGAAGTTTCAGTAATTGGAGTTTTAA
AAATAAAATACGACAATTCCAAAGAGGAGAAATACATGTGATGGCATCAA
TAGGAATCGAAACAGGAGAAAAAGCGCCAAAAACTTTAATAAGACGGCAT
TGGACATGATTGATTG back to topprotein sequence of jgi.p|Nanoce1779_2|589167 >mRNA_4449-protein ID=mRNA_4449-protein|Name=jgi.p|Nanoce1779_2|589167|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MPRGRTAVPYSYGMLLLLLLGVMELVPAEPGKWGKSAVFVKGQWTPFDEN
DEAGVPQPYPPRTDSWMQNDTSIMVSISSFRDYRCPKTLYNLFTKATNPN
RVFAGVVQQNSHDDADCLYGYCEMIKEERGLEPKTPATGPAAKVLENCPH
ADQVRMLRVSSEDAKGPTYGRYLGSKLLGSEEFCMQIDAHMDFEDDWDKQ
LLDMWGLTNNEYGVLTTYVPNFDQLHLNLNNRYEVPQICKVLYTKPENMV
RNEQATNCIWLSKPKLTASWAAGFSFNKCHADLKAPYDPHLPSLFDGEEY
SKYARMWTRYVNPSSF* back to topmRNA from alignment at scaffold_10:625430..627873- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4449 ID=mRNA_4449|Name=jgi.p|Nanoce1779_2|589167|organism=Nannochloropsis oceanica|type=mRNA|length=2444bp|location=Sequence derived from alignment at scaffold_10:625430..627873- (Nannochloropsis oceanica)
AGGTAGACACGCATCGCTGTCCTATCCACTATGCCAAGAGGAAGGACGGC
GGTGCCCTATTCATATGGGATGCTGCTGTTGTTGTTGTTAGGAGTAATGG
AACTCGTGCCGGCGGAGCCCGGCAAATGGGGCAAATCGGCAGTCTTCGTC
AAGGGACAGTGGACGCCATTCGACGAGAACGACGAGGCTGGCGTGCCACA
ACCTTATCCACCACGGACGGACTCGTGGATGCAGAATGACACAAGCATCA
TGGTCTCCATCTCCTCATTTCGGGATTACCGGTGCCCCAAGACGCTCTAC
AACCTTTTTACGTACGCACTGAGGGAAGAGAGGGAAAATAATTGGGATGC
ACATGTCTTGTACGAATTAATTGATGTGTGCATGCTTTTCAATTCTCGCT
CGGTCCCAACTTTGGAAGAAGATTCAGAGTAAAGTTTGAAATAATAGCGT
GGGGGGGGTGGAGTGGGGGGGGGACCTTGCACCTCCTCGCCATGTCGTTC
CACACCCTGAACAAGGTTTCGCCTTCATTGTTTCTTACCTCAAATCGCTG
TCTTCCCTTCCCTTTCCAATATGCCGCTCCACATCCCCAACCACAGCAAA
GCCACCAACCCCAACCGCGTCTTCGCAGGTGTTGTTCAGCAAAACAGCCA
CGATGACGCCGACTGCCTCTATGGCTATTGCGAGATGATCAAAGAAGAAC
GTGGACTTGAGCCGAAAACGCCCGCAACAGGACCGGCAGCCAAGGTCTTG
GAGAATTGCCCTCACGCAGATCAAGTTAGGATGCTGCGCGTGTCTAGTGA
AGATGCCAAAGGGCCAACATATGGGCGGTATCTAGGGAGCAAGCTGCTGG
GCAGTGAGGAATTTTGCATGCAAATCGATGCGCATATGGATTTCGAGGAT
GACTGGGATAAGCAGCTTTTGGACATGTGGGGTGAGTGGGTATAAGGAGT
GTTCGTGTGTATGTGTCTGTGTGTGGAGCATATACGCGGCAGAGCATGGG
TGGTTGTTGCTGTTGCAATTTTGCAAAATTCTCACACTATCCCCCCTTCT
CCTTCACACTCTTTCCCCCTCCAGGACTGACGAACAATGAGTACGGCGTG
CTCACCACCTATGTGCCCAACTTCGACCAGCTCCACCTCAACCTCAATAA
CCGATATGAAGTCCCGCAGATCTGTAAAGTTCTGTACACAAAGCCCGAAA
ACATGGTTCGTAACGAACAAGCGACAAATTGCATTTGGCTGAGCAAACCC
AAGCTGACGGCATCGTGGGCGGCAGGCTTTTCGTTTAACAAGTGCCACGC
GGATTTGAAGGCGCCGTATGACCCGCATCTACCCTCCTTGTTCGACGGCG
AGGAGTATTCGAAATATGCAAGGATGTGGACACGGTACGTCAATCCCTCT
TCATTTTGACACTTCATACGAAGTCCTGTTCTCCCTCCTCTGCCCCCCAC
CTCCCCCCCCCTGTCCGAGTGCAAGTAAAGTATATACCTTTTTAACCCCT
TCTCTCTTAATCCCCGTTTCTACCCCAGTGGCTACGATACCTACACGCCG
CACCGAAGCATCGTCTACCACGACTATACCCATGGTCCACAGACCAAGCG
CGCCAACGCGTGGTCTCGGAAACATCGCGAGCTAAAACGTTCGCATGACA
GGCTCCGCACCCTCCTCGGTGATCCCGACGCGCATATCAAGAGAGATACG
CCTGAGGCGAAAGAGATGTTGGGGAGGTGGGATTTGGGTGAAAAGAGGAG
TTTAAACCAATTGATTGCGTTCACGGGGGTTGATACTCGGAATTCTAAGA
TTGATTTTGATAATTGTGGGAAATTGCAGTGGGTGCCCTTTGAGGAGGGG
GAGGACGATGATTGGTACGTGGAAGATAGGAGGGAGGCCCAGGCCAAGGC
GAAGAGAATATCGGATAAAACTAGGGCGCTCGCGGGCATGAGGGGGAAGC
GGGTTTCAGATAAGAAGGGGAGAGGGTCGAAGGGCAGCATCACTGGTGGA
CAAGCACGGCATGGTGCAGGCGGTGTGCATGGATTGGACGAGCGCCTGGC
GATTCCTGAAGGGGGTGGAGCTGTGTTTATTTTGGCGATATGTTTGATTG
CTTTTGCGGCAGTGGTTTGCGCGTGCATCTACACGGGTAGAGTACTGCGG
TTCCCTGAGGGAAAACTTGAAAAGGGGGGATGGGAAGGAGGGAGGGCATG
GGAAGGGGTAGATGCAGGATTGCTGGCTGACTTTGGGGGGCTGGGAAGCA
AGGTCGTAAAGATGATATAACGAAGAATGTATTTGTGCGTATTTTGTTTG
TAGGAAGTTTCAGTAATTGGAGTTTTAAAAATAAAATACGACAATTCCAA
AGAGGAGAAATACATGTGATGGCATCAATAGGAATCGAAACAGGAGAAAA
AGCGCCAAAAACTTTAATAAGACGGCATTGGACATGATTGATTG back to topCoding sequence (CDS) from alignment at scaffold_10:625430..627873- >mRNA_4449 ID=mRNA_4449|Name=jgi.p|Nanoce1779_2|589167|organism=Nannochloropsis oceanica|type=CDS|length=2853bp|location=Sequence derived from alignment at scaffold_10:625430..627873- (Nannochloropsis oceanica)
GACTGACGAACAATGAGTACGGCGTGCTCACCACCTATGTGCCCAACTTC
GACCAGCTCCACCTCAACCTCAATAACCGATATGAAGTCCCGCAGATCTG
TAAAGTTCTGTACACAAAGCCCGAAAACATGGTTCGTAACGAACAAGCGA
CAAATTGCATTTGGCTGAGCAAACCCAAGCTGACGGCATCGTGGGCGGCA
GGCTTTTCGTTTAACAAGTGCCACGCGGATTTGAAGGCGCCGTATGACCC
GCATCTACCCTCCTTGTTCGACGGCGAGGAGTATTCGAAATATGCAAGGA
TGTGGACACGGTACGTCAATCCCTCTTCATTTTGACAAAGCCACCAACCC
CAACCGCGTCTTCGCAGGTGTTGTTCAGCAAAACAGCCACGATGACGCCG
ACTGCCTCTATGGCTATTGCGAGATGATCAAAGAAGAACGTGGACTTGAG
CCGAAAACGCCCGCAACAGGACCGGCAGCCAAGGTCTTGGAGAATTGCCC
TCACGCAGATCAAGTTAGGATGCTGCGCGTGTCTAGTGAAGATGCCAAAG
GGCCAACATATGGGCGGTATCTAGGGAGCAAGCTGCTGGGCAGTGAGGAA
TTTTGCATGCAAATCGATGCGCATATGGATTTCGAGGATGACTGGGATAA
GCAGCTTTTGGACATGTGGGATGCCAAGAGGAAGGACGGCGGTGCCCTAT
TCATATGGGATGCTGCTGTTGTTGTTGTTAGGAGTAATGGAACTCGTGCC
GGCGGAGCCCGGCAAATGGGGCAAATCGGCAGTCTTCGTCAAGGGACAGT
GGACGCCATTCGACGAGAACGACGAGGCTGGCGTGCCACAACCTTATCCA
CCACGGACGGACTCGTGGATGCAGAATGACACAAGCATCATGGTCTCCAT
CTCCTCATTTCGGGATTACCGGTGCCCCAAGACGCTCTACAACCTTTTTA
CGACTGACGAACAATGAGTACGGCGTGCTCACCACCTATGTGCCCAACTT
CGACCAGCTCCACCTCAACCTCAATAACCGATATGAAGTCCCGCAGATCT
GTAAAGTTCTGTACACAAAGCCCGAAAACATGGTTCGTAACGAACAAGCG
ACAAATTGCATTTGGCTGAGCAAACCCAAGCTGACGGCATCGTGGGCGGC
AGGCTTTTCGTTTAACAAGTGCCACGCGGATTTGAAGGCGCCGTATGACC
CGCATCTACCCTCCTTGTTCGACGGCGAGGAGTATTCGAAATATGCAAGG
ATGTGGACACGGTACGTCAATCCCTCTTCATTTTGACAAAGCCACCAACC
CCAACCGCGTCTTCGCAGGTGTTGTTCAGCAAAACAGCCACGATGACGCC
GACTGCCTCTATGGCTATTGCGAGATGATCAAAGAAGAACGTGGACTTGA
GCCGAAAACGCCCGCAACAGGACCGGCAGCCAAGGTCTTGGAGAATTGCC
CTCACGCAGATCAAGTTAGGATGCTGCGCGTGTCTAGTGAAGATGCCAAA
GGGCCAACATATGGGCGGTATCTAGGGAGCAAGCTGCTGGGCAGTGAGGA
ATTTTGCATGCAAATCGATGCGCATATGGATTTCGAGGATGACTGGGATA
AGCAGCTTTTGGACATGTGGGATGCCAAGAGGAAGGACGGCGGTGCCCTA
TTCATATGGGATGCTGCTGTTGTTGTTGTTAGGAGTAATGGAACTCGTGC
CGGCGGAGCCCGGCAAATGGGGCAAATCGGCAGTCTTCGTCAAGGGACAG
TGGACGCCATTCGACGAGAACGACGAGGCTGGCGTGCCACAACCTTATCC
ACCACGGACGGACTCGTGGATGCAGAATGACACAAGCATCATGGTCTCCA
TCTCCTCATTTCGGGATTACCGGTGCCCCAAGACGCTCTACAACCTTTTT
ACGACTGACGAACAATGAGTACGGCGTGCTCACCACCTATGTGCCCAACT
TCGACCAGCTCCACCTCAACCTCAATAACCGATATGAAGTCCCGCAGATC
TGTAAAGTTCTGTACACAAAGCCCGAAAACATGGTTCGTAACGAACAAGC
GACAAATTGCATTTGGCTGAGCAAACCCAAGCTGACGGCATCGTGGGCGG
CAGGCTTTTCGTTTAACAAGTGCCACGCGGATTTGAAGGCGCCGTATGAC
CCGCATCTACCCTCCTTGTTCGACGGCGAGGAGTATTCGAAATATGCAAG
GATGTGGACACGGTACGTCAATCCCTCTTCATTTTGACAAAGCCACCAAC
CCCAACCGCGTCTTCGCAGGTGTTGTTCAGCAAAACAGCCACGATGACGC
CGACTGCCTCTATGGCTATTGCGAGATGATCAAAGAAGAACGTGGACTTG
AGCCGAAAACGCCCGCAACAGGACCGGCAGCCAAGGTCTTGGAGAATTGC
CCTCACGCAGATCAAGTTAGGATGCTGCGCGTGTCTAGTGAAGATGCCAA
AGGGCCAACATATGGGCGGTATCTAGGGAGCAAGCTGCTGGGCAGTGAGG
AATTTTGCATGCAAATCGATGCGCATATGGATTTCGAGGATGACTGGGAT
AAGCAGCTTTTGGACATGTGGGATGCCAAGAGGAAGGACGGCGGTGCCCT
ATTCATATGGGATGCTGCTGTTGTTGTTGTTAGGAGTAATGGAACTCGTG
CCGGCGGAGCCCGGCAAATGGGGCAAATCGGCAGTCTTCGTCAAGGGACA
GTGGACGCCATTCGACGAGAACGACGAGGCTGGCGTGCCACAACCTTATC
CACCACGGACGGACTCGTGGATGCAGAATGACACAAGCATCATGGTCTCC
ATCTCCTCATTTCGGGATTACCGGTGCCCCAAGACGCTCTACAACCTTTT
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