jgi.p|Nanoce1779_2|588615, mRNA_4287 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588615
Unique NamemRNA_4287
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2214
Alignment locationscaffold_10:198471..200684 -

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Properties
Property NameValue
TranscriptId588701
TrackFilteredModels2
ProteinId588615
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:198471..200684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588615gene_4287Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588615mRNA_4287-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4287CDS_4287Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4287 ID=mRNA_4287|Name=jgi.p|Nanoce1779_2|588615|organism=Nannochloropsis oceanica|type=mRNA|length=2214bp
GGGGGGAGCAGGGAGGGAGGGAGCCAGGGAGGGGATGATGAGTTCAGGCC
AATATGGGGGGGGGGGGGATGGGAATGCCTGCCGCCGGGGCGGCTTTAGG
AGGGGCTGATCCGGGACAGCCTTTGTATGTGACGATGGTGGAGCCTGGAT
TTAAGCAGCAGTTGTGGAAGACGTTCAGGTTTGCGTTATTTGTCTTCCTG
GTCATTTCGGGGTTGAGTGCTTTGATCGACGACAAGGGTATAAGTAGCAA
GTTGATGATGTCGACAAATTTGCATATGGCGGAGAGTAGTGACAAACGAT
TTGATGACGTGATGGGAGTGGATGAGGCGAAGCAGGAGCTGGAGGAGATT
GTGTTGTATCTGAGGGACCCTTCGAGGTTCACGCGGTTGGGCGGCAAGCT
TCCGAGAGGCCTTCTGCTTCTGGGGCCGCCGGGGACGGGCAAGACGTTGC
TAGCAAGGGCGATTGCAGGGGAGGCGGGGGTTCCTTTTTTCTATGCGTCG
GGATCGGAATTTGAGGAGATGTACGTGGGCGTTGGAGCAAGGAGGGTAAG
GGATTTGTTTGAAGCGGCCAAGAAGCGGAGTCCGTGCATCATCTTCATCG
ATGAGATCGACGCGATTGGAGGGGCGAGACATCTTAAGGACCAGCAGGCG
ATGAAGATGACCTTGAATCAGCTCTTGGTGGAACTGGACGGGTTTGAACA
GAACAAAGGGGTGATAATCATCGGTGCGACTAATTTCCCTCAGTCCCTGG
ATGAGGCGCTGTTGAGGCCGGGGAGGTTCGATAAGCATGTGCAGGTCCCG
CTGCCCGATATCTTGGGTAGGAAGCAAATCCTGGAGCTGTATGTGAAGAA
AATTCCGACGGATGAGGATGTGGATTTGGATATATTGGCGAGGGGGACCC
CGGGGATGAGTGGGGCAGAGTTGTCGAATTTGGTTAATGAAGCCGCCTTG
AAAGCGTCGATAGACGGGTTGAAGGCGATCAATATGGCCACGTTTGAATA
CGCCAAGGACAAGATCATGATGGGGTCCGAGCGGAGGAGTGCGGTGATCA
GCAAGGAGACTGCTACTGTGACCGCCTACCACGAGGGGGGGCATGCCCTG
GTGGCATTGAAAACGGGTGGGGCGGACCCTGTGTACAAGGCGACCATCAT
GCCGAGGGGACAGGCGCTTGGAATGGTGACTCAGTTGCCGGATGGGGATC
AGACGAGCATGAGCAAGAAACAGATTCTTGCGAGGCTTGACGTGTGTATG
GGGGGAAGGGTGGCGGAGGAGTTGATTTTTGGGGCGGAGAATGTTACAAG
TGGCGCGAGTTCGGATATCCAGCAGGCGACACGCTTGGCACGCGCGATGG
TGACCCAGTGGGGCATGAGCGACACTGTTGGGTTGGTTTTCCATGCCAAG
GATGGAGGGGAGCAAAGTCCGGAGACAAGGGCAGCGATTGATAGGGAGGT
GAAGTCGATTTTGGATGCGTCGCACGTGAGAGCGAAGGAGATGTTGTTGA
AGTATAAATCGGAATTAGACGTCCTTGCCAAGGCGTTACTTGAACACGAG
ACCTTGACGGGCCCGGAGATCATTGATCTGCTGGCAGGGAAGAAGTTGAG
TAAACCCAAGGTGGCTCCCAGGGCGTCTATGGCCGCCGAGGCACCGAAGC
AGGGAGGGGCAGCCGCAGGGGCAGCGGCGAAGCCGGGGATTCTGAAGGGA
GGGAGGTTGGGTGCTTAAAATGGAGGGGATACTTAGAGGAAGGAAAGAAA
GGAGTGGAGAAGCGGGTATTGCGCCGTGTCAAAATATCTGTCTCTTACAT
AGGAATTGAGGAAATGGAGGCAAGCGACGAGAGGAGGACAGAAGGGTGGA
GAGAGGAAGAGAAAAGTGCAGAGGGGTGAGTGGCTACATGTAGGTATGTG
TCGATCAGGGTTTTTGCGTCCATTTTCGCCGGCTATTGTCAAAGATTAAA
GATTATTCAACGCAGGAAAGGTGATGCTGAGCAACATGAAGCGTAGAGAA
AAAGAGATATGCTATGATCTGGATGGGTGGAAAAAAGACGTGAGGTGAGT
AGTAAACGCAAGGTGTGTGTATGCATAAGCAAGAAATGGAAACTTCTTGG
GAAATAATAAAAGTCGAAACTTCCTGATTGGGGGCAAGTTCAATGATTGG
ACGAGTGTATGAAATTGTTCGTGTCTTAGCCCTTGAAAGTTTTTTTCTTT
TGTTTTTTTTTCCC
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protein sequence of jgi.p|Nanoce1779_2|588615

>mRNA_4287-protein ID=mRNA_4287-protein|Name=jgi.p|Nanoce1779_2|588615|organism=Nannochloropsis oceanica|type=polypeptide|length=555bp
MGGGGMGMPAAGAALGGADPGQPLYVTMVEPGFKQQLWKTFRFALFVFLV
ISGLSALIDDKGISSKLMMSTNLHMAESSDKRFDDVMGVDEAKQELEEIV
LYLRDPSRFTRLGGKLPRGLLLLGPPGTGKTLLARAIAGEAGVPFFYASG
SEFEEMYVGVGARRVRDLFEAAKKRSPCIIFIDEIDAIGGARHLKDQQAM
KMTLNQLLVELDGFEQNKGVIIIGATNFPQSLDEALLRPGRFDKHVQVPL
PDILGRKQILELYVKKIPTDEDVDLDILARGTPGMSGAELSNLVNEAALK
ASIDGLKAINMATFEYAKDKIMMGSERRSAVISKETATVTAYHEGGHALV
ALKTGGADPVYKATIMPRGQALGMVTQLPDGDQTSMSKKQILARLDVCMG
GRVAEELIFGAENVTSGASSDIQQATRLARAMVTQWGMSDTVGLVFHAKD
GGEQSPETRAAIDREVKSILDASHVRAKEMLLKYKSELDVLAKALLEHET
LTGPEIIDLLAGKKLSKPKVAPRASMAAEAPKQGGAAAGAAAKPGILKGG
RLGA*
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mRNA from alignment at scaffold_10:198471..200684-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4287 ID=mRNA_4287|Name=jgi.p|Nanoce1779_2|588615|organism=Nannochloropsis oceanica|type=mRNA|length=2214bp|location=Sequence derived from alignment at scaffold_10:198471..200684- (Nannochloropsis oceanica)
GGGGGGAGCAGGGAGGGAGGGAGCCAGGGAGGGGATGATGAGTTCAGGCC
AATATGGGGGGGGGGGGGATGGGAATGCCTGCCGCCGGGGCGGCTTTAGG
AGGGGCTGATCCGGGACAGCCTTTGTATGTGACGATGGTGGAGCCTGGAT
TTAAGCAGCAGTTGTGGAAGACGTTCAGGTTTGCGTTATTTGTCTTCCTG
GTCATTTCGGGGTTGAGTGCTTTGATCGACGACAAGGGTATAAGTAGCAA
GTTGATGATGTCGACAAATTTGCATATGGCGGAGAGTAGTGACAAACGAT
TTGATGACGTGATGGGAGTGGATGAGGCGAAGCAGGAGCTGGAGGAGATT
GTGTTGTATCTGAGGGACCCTTCGAGGTTCACGCGGTTGGGCGGCAAGCT
TCCGAGAGGCCTTCTGCTTCTGGGGCCGCCGGGGACGGGCAAGACGTTGC
TAGCAAGGGCGATTGCAGGGGAGGCGGGGGTTCCTTTTTTCTATGCGTCG
GGATCGGAATTTGAGGAGATGTACGTGGGCGTTGGAGCAAGGAGGGTAAG
GGATTTGTTTGAAGCGGCCAAGAAGCGGAGTCCGTGCATCATCTTCATCG
ATGAGATCGACGCGATTGGAGGGGCGAGACATCTTAAGGACCAGCAGGCG
ATGAAGATGACCTTGAATCAGCTCTTGGTGGAACTGGACGGGTTTGAACA
GAACAAAGGGGTGATAATCATCGGTGCGACTAATTTCCCTCAGTCCCTGG
ATGAGGCGCTGTTGAGGCCGGGGAGGTTCGATAAGCATGTGCAGGTCCCG
CTGCCCGATATCTTGGGTAGGAAGCAAATCCTGGAGCTGTATGTGAAGAA
AATTCCGACGGATGAGGATGTGGATTTGGATATATTGGCGAGGGGGACCC
CGGGGATGAGTGGGGCAGAGTTGTCGAATTTGGTTAATGAAGCCGCCTTG
AAAGCGTCGATAGACGGGTTGAAGGCGATCAATATGGCCACGTTTGAATA
CGCCAAGGACAAGATCATGATGGGGTCCGAGCGGAGGAGTGCGGTGATCA
GCAAGGAGACTGCTACTGTGACCGCCTACCACGAGGGGGGGCATGCCCTG
GTGGCATTGAAAACGGGTGGGGCGGACCCTGTGTACAAGGCGACCATCAT
GCCGAGGGGACAGGCGCTTGGAATGGTGACTCAGTTGCCGGATGGGGATC
AGACGAGCATGAGCAAGAAACAGATTCTTGCGAGGCTTGACGTGTGTATG
GGGGGAAGGGTGGCGGAGGAGTTGATTTTTGGGGCGGAGAATGTTACAAG
TGGCGCGAGTTCGGATATCCAGCAGGCGACACGCTTGGCACGCGCGATGG
TGACCCAGTGGGGCATGAGCGACACTGTTGGGTTGGTTTTCCATGCCAAG
GATGGAGGGGAGCAAAGTCCGGAGACAAGGGCAGCGATTGATAGGGAGGT
GAAGTCGATTTTGGATGCGTCGCACGTGAGAGCGAAGGAGATGTTGTTGA
AGTATAAATCGGAATTAGACGTCCTTGCCAAGGCGTTACTTGAACACGAG
ACCTTGACGGGCCCGGAGATCATTGATCTGCTGGCAGGGAAGAAGTTGAG
TAAACCCAAGGTGGCTCCCAGGGCGTCTATGGCCGCCGAGGCACCGAAGC
AGGGAGGGGCAGCCGCAGGGGCAGCGGCGAAGCCGGGGATTCTGAAGGGA
GGGAGGTTGGGTGCTTAAAATGGAGGGGATACTTAGAGGAAGGAAAGAAA
GGAGTGGAGAAGCGGGTATTGCGCCGTGTCAAAATATCTGTCTCTTACAT
AGGAATTGAGGAAATGGAGGCAAGCGACGAGAGGAGGACAGAAGGGTGGA
GAGAGGAAGAGAAAAGTGCAGAGGGGTGAGTGGCTACATGTAGGTATGTG
TCGATCAGGGTTTTTGCGTCCATTTTCGCCGGCTATTGTCAAAGATTAAA
GATTATTCAACGCAGGAAAGGTGATGCTGAGCAACATGAAGCGTAGAGAA
AAAGAGATATGCTATGATCTGGATGGGTGGAAAAAAGACGTGAGGTGAGT
AGTAAACGCAAGGTGTGTGTATGCATAAGCAAGAAATGGAAACTTCTTGG
GAAATAATAAAAGTCGAAACTTCCTGATTGGGGGCAAGTTCAATGATTGG
ACGAGTGTATGAAATTGTTCGTGTCTTAGCCCTTGAAAGTTTTTTTCTTT
TGTTTTTTTTTCCC
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Coding sequence (CDS) from alignment at scaffold_10:198471..200684-

>mRNA_4287 ID=mRNA_4287|Name=jgi.p|Nanoce1779_2|588615|organism=Nannochloropsis oceanica|type=CDS|length=1665bp|location=Sequence derived from alignment at scaffold_10:198471..200684- (Nannochloropsis oceanica)
ATGGGGGGGGGGGGGATGGGAATGCCTGCCGCCGGGGCGGCTTTAGGAGG
GGCTGATCCGGGACAGCCTTTGTATGTGACGATGGTGGAGCCTGGATTTA
AGCAGCAGTTGTGGAAGACGTTCAGGTTTGCGTTATTTGTCTTCCTGGTC
ATTTCGGGGTTGAGTGCTTTGATCGACGACAAGGGTATAAGTAGCAAGTT
GATGATGTCGACAAATTTGCATATGGCGGAGAGTAGTGACAAACGATTTG
ATGACGTGATGGGAGTGGATGAGGCGAAGCAGGAGCTGGAGGAGATTGTG
TTGTATCTGAGGGACCCTTCGAGGTTCACGCGGTTGGGCGGCAAGCTTCC
GAGAGGCCTTCTGCTTCTGGGGCCGCCGGGGACGGGCAAGACGTTGCTAG
CAAGGGCGATTGCAGGGGAGGCGGGGGTTCCTTTTTTCTATGCGTCGGGA
TCGGAATTTGAGGAGATGTACGTGGGCGTTGGAGCAAGGAGGGTAAGGGA
TTTGTTTGAAGCGGCCAAGAAGCGGAGTCCGTGCATCATCTTCATCGATG
AGATCGACGCGATTGGAGGGGCGAGACATCTTAAGGACCAGCAGGCGATG
AAGATGACCTTGAATCAGCTCTTGGTGGAACTGGACGGGTTTGAACAGAA
CAAAGGGGTGATAATCATCGGTGCGACTAATTTCCCTCAGTCCCTGGATG
AGGCGCTGTTGAGGCCGGGGAGGTTCGATAAGCATGTGCAGGTCCCGCTG
CCCGATATCTTGGGTAGGAAGCAAATCCTGGAGCTGTATGTGAAGAAAAT
TCCGACGGATGAGGATGTGGATTTGGATATATTGGCGAGGGGGACCCCGG
GGATGAGTGGGGCAGAGTTGTCGAATTTGGTTAATGAAGCCGCCTTGAAA
GCGTCGATAGACGGGTTGAAGGCGATCAATATGGCCACGTTTGAATACGC
CAAGGACAAGATCATGATGGGGTCCGAGCGGAGGAGTGCGGTGATCAGCA
AGGAGACTGCTACTGTGACCGCCTACCACGAGGGGGGGCATGCCCTGGTG
GCATTGAAAACGGGTGGGGCGGACCCTGTGTACAAGGCGACCATCATGCC
GAGGGGACAGGCGCTTGGAATGGTGACTCAGTTGCCGGATGGGGATCAGA
CGAGCATGAGCAAGAAACAGATTCTTGCGAGGCTTGACGTGTGTATGGGG
GGAAGGGTGGCGGAGGAGTTGATTTTTGGGGCGGAGAATGTTACAAGTGG
CGCGAGTTCGGATATCCAGCAGGCGACACGCTTGGCACGCGCGATGGTGA
CCCAGTGGGGCATGAGCGACACTGTTGGGTTGGTTTTCCATGCCAAGGAT
GGAGGGGAGCAAAGTCCGGAGACAAGGGCAGCGATTGATAGGGAGGTGAA
GTCGATTTTGGATGCGTCGCACGTGAGAGCGAAGGAGATGTTGTTGAAGT
ATAAATCGGAATTAGACGTCCTTGCCAAGGCGTTACTTGAACACGAGACC
TTGACGGGCCCGGAGATCATTGATCTGCTGGCAGGGAAGAAGTTGAGTAA
ACCCAAGGTGGCTCCCAGGGCGTCTATGGCCGCCGAGGCACCGAAGCAGG
GAGGGGCAGCCGCAGGGGCAGCGGCGAAGCCGGGGATTCTGAAGGGAGGG
AGGTTGGGTGCTTAA
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Synonyms
Publications