jgi.p|Nanoce1779_2|588596, mRNA_4279 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588596
Unique Name	mRNA_4279
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1420
Alignment location	scaffold_10:182112..183531 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	588682
Track	FilteredModels2
ProteinId	588596

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:182112..183531 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588596	gene_4279	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588596	mRNA_4279-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4279	CDS_4279	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:182112..183531+
coding sequence from alignment at scaffold_10:182112..183531+

mRNA sequence

>mRNA_4279 ID=mRNA_4279|Name=jgi.p|Nanoce1779_2|588596|organism=Nannochloropsis oceanica|type=mRNA|length=1420bp
AACAGGCTACCCACCGCCACCACCATCAGGAGCAGCAGCAGCAGCGGCCG
CGTGACTGTCGTTCTAGCCTTTCCTGATGCATGGTGGTTGCCCGCTTCGA
GTTCTGCTTGGCCTCCCGCTCGTTCTCTGCGTCCTCCTTTCCCCCACCAT
TTTCGCCTTCCGTCGCCCATTGCTCAGCGCCCGCCCCGCTGCCTCTGCCT
TTGGCTGGTCCTCGTCTAAGCAACGAGCCGCCACCACCTTTTCGTTCGGG
TGGAAAAACAAGCTTAGCGCATCGTCCTTCACTTCGTCGTGGCCAGCAGC
AGGAGGTGTAGGAGCAGGAGCAGTGACGGCTCCACCAAATCAACCACCGC
CTACCCGCGCCTTCGCCATGGCGCAGCTGAGCAAGATCACAGGTGGCGCT
ACCGGCGCCGCTGACACAGGATCTAAGCAGCATTTCTCGCTCTCGACGCT
TTGGGGCGTCGTTGGCGTGGTGGCTGTGCTTAGCAACGCCATCCGCCGTC
TCTTGCCCATTGCTCTCGAGCCGTTCAGCAAGGCCGGGACCGCCGGTGCC
ACTGCCTTTACACCTCTCCACTGGGCGCAATACGTGGGGTTTGCGTTGGT
TATGGCCTACGCTGAGGGTTACAAGGGCTTTCAACTCAAGTTCTCTCCGC
TAGTAGTCAAGCGAGCGATGACCTTGGGACCTAACTCTCCCTTCCACCAC
AAGCTGTTCGCGGCCCCCTACAGCATGGGTCTCTTCCACGCCAGCAAAAA
ACGACAAATTGTGTCGTGGACACTCGCCCTGGGCATTGTGGGATTGGTGA
AATTAGTCAAGACGTTGGTGTTTCCGTACAGGGCTATAGTAGACGCGGGG
GTGGTGGTGGGGTTGTCATGGGGTACGGCCTCGATTGCGGGTATTTACAT
CCAGGCGCTGCGGGGACAGGTGCCAGGGATCGATCCGGCCATGCCAGAGA
AGAAGGTGCAATGAAATCATCATATAGAGGATATAGGAGGTGAAGCGTGG
TTTGCAATGAGGCAAGAGTGTAGGAGTGAAGGTAAGAACTAGTCGTGGGG
AGGTGGGTACCGGGACAAGGGAAAGCTTATCTGCATCAACGATGGAAAAG
CAACGAAGACGGAGATAGAAAAGAGGGGGTGGGGCAAAGAAGGGCACAAA
CACTAGAAGGATTTTACCAAACCATCGGCAACACGCAACACTAGTACGAC
AAAAAGAATGATGCGATGAAAGAGAGGCCTCCTGGCGGAGTTTTGATACC
TATGCAGAAGGTGAGAGTGATCCGGCACGGCCACCTACGACGCCGACGAC
CCTCCCTCGCAAGTGAATGTGGTTGTTCCCTTGCCAGTGCGTGCGCGAAA
GGGAAAGGGATAGAAGACAAGAGACAGCAGAAGCAATACAACAAGGAAAC
AAAAGCAAGCATATCCACAA

protein sequence of jgi.p|Nanoce1779_2|588596

>mRNA_4279-protein ID=mRNA_4279-protein|Name=jgi.p|Nanoce1779_2|588596|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MHGGCPLRVLLGLPLVLCVLLSPTIFAFRRPLLSARPAASAFGWSSSKQR
AATTFSFGWKNKLSASSFTSSWPAAGGVGAGAVTAPPNQPPPTRAFAMAQ
LSKITGGATGAADTGSKQHFSLSTLWGVVGVVAVLSNAIRRLLPIALEPF
SKAGTAGATAFTPLHWAQYVGFALVMAYAEGYKGFQLKFSPLVVKRAMTL
GPNSPFHHKLFAAPYSMGLFHASKKRQIVSWTLALGIVGLVKLVKTLVFP
YRAIVDAGVVVGLSWGTASIAGIYIQALRGQVPGIDPAMPEKKVQ*

mRNA from alignment at scaffold_10:182112..183531+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4279 ID=mRNA_4279|Name=jgi.p|Nanoce1779_2|588596|organism=Nannochloropsis oceanica|type=mRNA|length=1420bp|location=Sequence derived from alignment at scaffold_10:182112..183531+ (Nannochloropsis oceanica)
AACAGGCTACCCACCGCCACCACCATCAGGAGCAGCAGCAGCAGCGGCCG
CGTGACTGTCGTTCTAGCCTTTCCTGATGCATGGTGGTTGCCCGCTTCGA
GTTCTGCTTGGCCTCCCGCTCGTTCTCTGCGTCCTCCTTTCCCCCACCAT
TTTCGCCTTCCGTCGCCCATTGCTCAGCGCCCGCCCCGCTGCCTCTGCCT
TTGGCTGGTCCTCGTCTAAGCAACGAGCCGCCACCACCTTTTCGTTCGGG
TGGAAAAACAAGCTTAGCGCATCGTCCTTCACTTCGTCGTGGCCAGCAGC
AGGAGGTGTAGGAGCAGGAGCAGTGACGGCTCCACCAAATCAACCACCGC
CTACCCGCGCCTTCGCCATGGCGCAGCTGAGCAAGATCACAGGTGGCGCT
ACCGGCGCCGCTGACACAGGATCTAAGCAGCATTTCTCGCTCTCGACGCT
TTGGGGCGTCGTTGGCGTGGTGGCTGTGCTTAGCAACGCCATCCGCCGTC
TCTTGCCCATTGCTCTCGAGCCGTTCAGCAAGGCCGGGACCGCCGGTGCC
ACTGCCTTTACACCTCTCCACTGGGCGCAATACGTGGGGTTTGCGTTGGT
TATGGCCTACGCTGAGGGTTACAAGGGCTTTCAACTCAAGTTCTCTCCGC
TAGTAGTCAAGCGAGCGATGACCTTGGGACCTAACTCTCCCTTCCACCAC
AAGCTGTTCGCGGCCCCCTACAGCATGGGTCTCTTCCACGCCAGCAAAAA
ACGACAAATTGTGTCGTGGACACTCGCCCTGGGCATTGTGGGATTGGTGA
AATTAGTCAAGACGTTGGTGTTTCCGTACAGGGCTATAGTAGACGCGGGG
GTGGTGGTGGGGTTGTCATGGGGTACGGCCTCGATTGCGGGTATTTACAT
CCAGGCGCTGCGGGGACAGGTGCCAGGGATCGATCCGGCCATGCCAGAGA
AGAAGGTGCAATGAAATCATCATATAGAGGATATAGGAGGTGAAGCGTGG
TTTGCAATGAGGCAAGAGTGTAGGAGTGAAGGTAAGAACTAGTCGTGGGG
AGGTGGGTACCGGGACAAGGGAAAGCTTATCTGCATCAACGATGGAAAAG
CAACGAAGACGGAGATAGAAAAGAGGGGGTGGGGCAAAGAAGGGCACAAA
CACTAGAAGGATTTTACCAAACCATCGGCAACACGCAACACTAGTACGAC
AAAAAGAATGATGCGATGAAAGAGAGGCCTCCTGGCGGAGTTTTGATACC
TATGCAGAAGGTGAGAGTGATCCGGCACGGCCACCTACGACGCCGACGAC
CCTCCCTCGCAAGTGAATGTGGTTGTTCCCTTGCCAGTGCGTGCGCGAAA
GGGAAAGGGATAGAAGACAAGAGACAGCAGAAGCAATACAACAAGGAAAC
AAAAGCAAGCATATCCACAA

Coding sequence (CDS) from alignment at scaffold_10:182112..183531+

>mRNA_4279 ID=mRNA_4279|Name=jgi.p|Nanoce1779_2|588596|organism=Nannochloropsis oceanica|type=CDS|length=888bp|location=Sequence derived from alignment at scaffold_10:182112..183531+ (Nannochloropsis oceanica)
ATGCATGGTGGTTGCCCGCTTCGAGTTCTGCTTGGCCTCCCGCTCGTTCT
CTGCGTCCTCCTTTCCCCCACCATTTTCGCCTTCCGTCGCCCATTGCTCA
GCGCCCGCCCCGCTGCCTCTGCCTTTGGCTGGTCCTCGTCTAAGCAACGA
GCCGCCACCACCTTTTCGTTCGGGTGGAAAAACAAGCTTAGCGCATCGTC
CTTCACTTCGTCGTGGCCAGCAGCAGGAGGTGTAGGAGCAGGAGCAGTGA
CGGCTCCACCAAATCAACCACCGCCTACCCGCGCCTTCGCCATGGCGCAG
CTGAGCAAGATCACAGGTGGCGCTACCGGCGCCGCTGACACAGGATCTAA
GCAGCATTTCTCGCTCTCGACGCTTTGGGGCGTCGTTGGCGTGGTGGCTG
TGCTTAGCAACGCCATCCGCCGTCTCTTGCCCATTGCTCTCGAGCCGTTC
AGCAAGGCCGGGACCGCCGGTGCCACTGCCTTTACACCTCTCCACTGGGC
GCAATACGTGGGGTTTGCGTTGGTTATGGCCTACGCTGAGGGTTACAAGG
GCTTTCAACTCAAGTTCTCTCCGCTAGTAGTCAAGCGAGCGATGACCTTG
GGACCTAACTCTCCCTTCCACCACAAGCTGTTCGCGGCCCCCTACAGCAT
GGGTCTCTTCCACGCCAGCAAAAAACGACAAATTGTGTCGTGGACACTCG
CCCTGGGCATTGTGGGATTGGTGAAATTAGTCAAGACGTTGGTGTTTCCG
TACAGGGCTATAGTAGACGCGGGGGTGGTGGTGGGGTTGTCATGGGGTAC
GGCCTCGATTGCGGGTATTTACATCCAGGCGCTGCGGGGACAGGTGCCAG
GGATCGATCCGGCCATGCCAGAGAAGAAGGTGCAATGA

Synonyms

Publications