jgi.p|Nanoce1779_2|565691, mRNA_4245 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|565691
Unique Name	mRNA_4245
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1947
Alignment location	scaffold_10:99492..101438 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	565777
Track	FilteredModels2
ProteinId	565691

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:99492..101438 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|565691	gene_4245	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4245	CDS_4245	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|565691	mRNA_4245-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:99492..101438-
coding sequence from alignment at scaffold_10:99492..101438-

mRNA sequence

>mRNA_4245 ID=mRNA_4245|Name=jgi.p|Nanoce1779_2|565691|organism=Nannochloropsis oceanica|type=mRNA|length=1947bp
ATGGGCGGCGGAGGTGGAGCAGCTCCGCACGCGGACCTCTTTTTAGCCGA
GCTATTTGGCGGCGTCAAGAACAAACCGAGGGAGGGGAGCGTGGTCCAAC
TGCATCAAAACGCCCTAGCACGGATCAGTGGCCTGCGCGAAGCCAGAATA
CACGACCTAGTCATCTTGACGCAGCCCGACGGGAGCACACGACAGGGGCT
GGTGATTGATTTGGAATTGAACACGGTGGCGGTCGCGCTGCTTGACCAGG
ACCTCCCCACGGAAGGGGCTGATGCGGTCTTGACGGGCACCACGCCCAGC
ATCCGCGTGGGCCCAGCCATCGTCGGACGCGTCATCGATCCCTTAGGACG
ACCAATACCACACTTAGAAACAAATCTAATAAACGACAAGGCTGCCGCAG
ACTCCTCCCTTCCGACCATTTCCTTGCCCATGCTCAGCAGCAGCAGCAGC
CAACACCTCGCCCCAAGCATTATGGCCCGCAAACCCCTCTGCCATCGCCT
TCGCACCGGCATCAAAGCCCTCGACATTTTCCACCCAATTGGCCATGGGC
AGAGTGTTGGCCTCCTCGGGAAACCCGGCTCTGGTAAAACCACCCTGGCA
CTCCAAATCCTCGCGAACCAAAAACCCTCCTCCTCCTCCCTCCCGTCCTC
CCTCCCCCTCACCCACTGCATATACGTCGCCATCGGACAAGACTCTCGCG
CCATTACTCGCATCGTGGATCAGCTAACCCGTGCGGGATGTATAGAATCA
GTCACGATAATTGCAGCTACAGAGGACATGCCTCCGGGCTTGAGGTATCT
GGCGCCGTTTGCTGGGTGTGCTGTAGGGGAGTACTGGAGAGACAAGGGTG
GGAGGGCTCTGGTAGTGTTCGACGATTTGAGCAGGCATGAAAGCGCTTAT
AGTGAGATGGCGAGATTTTTATTGAAGCCAGAGGTGGAGAGGGGGTTGGC
ATTGCACGGCCCGTTGCTGGAACGGTGCGCACAGCTGTCGGATCTCAAGG
GAGGGGGAGCGATGACTGCGTTGGTGCTGGTGGAGGGGGAGGCGGTGGAT
GGCGAGGAGAGGGCTTGGAATCAAGAAGAGAGAGAAAGCGGAGGGCATGG
ATTGGCGCATCGGATTAATTCACTCGTGGACCACGCGATTAATTTGAATT
TAAAATTAGCGCAACGGAAGATCTTTCCGTCCGTTGACGTGACCCAGCAT
ATGAATCTGCAGTCGCCGGGGATGGCGCTGGTGCCAGAGCCAGCGAAGGG
ATGTGTGCAGCAGTTGAGAATTTTGTGGGCGGAGGCTTTGGATGATGAGG
CGGGCGCGAAATTGGCGGAGGAGTTAGGGATCCAGGCGATGGAGGAGGGG
GAAGAGAGGAAGGTGGAACGGCTAGAGTATTTGGAGAGGGTGAGGGTGCT
GTTTGAGCAACGGAGGGAGGAAGGGGGGGAGGGAGGGGAAGGAATGGGAG
TGGATGAGGCTGGGGTGGTGTTGGTTTTGCTTTGTTGTTTGCAGGAGGAG
ATGCTGATGGGATTGGAGGTGGGGACGGTGAGGGAGTTAGAACGCGTGTT
ATCGCAAGAGTTACCGCGGGCGAAGGGATGGCAGAAATTAAAGGCGCAAG
TGGAGGGTCTAGCACGACAGGCAGATGCTAGGACGGTGGCGGAGGCGTTC
TGGGAGGCGCACATGGCGGCGCAAGGACGTGGGAGGGGAGAAGAAGAGGG
AGGGAAGGAGGAGAGGAGGGGGGAGGCGACATTGGCGTATGTCAAGTCGG
TGTCGGTTGGAGGGGAGACGCAGGCGTTGAGTCAAGAGGCAGGACGGGTT
TATCGCCGGTGTTCGGATGTGTTGACGCAAGCGATTAATTACGCGCAAAA
AATGCAGCAGATTGCCAAATTGATGGGGAAAGGCCGGGTAGGCCAAGAGG
CCGGGGCAGGGAGGATGCAGACGAATGTGGGGAAGCGCCGGAGGTAG

protein sequence of jgi.p|Nanoce1779_2|565691

>mRNA_4245-protein ID=mRNA_4245-protein|Name=jgi.p|Nanoce1779_2|565691|organism=Nannochloropsis oceanica|type=polypeptide|length=649bp
MGGGGGAAPHADLFLAELFGGVKNKPREGSVVQLHQNALARISGLREARI
HDLVILTQPDGSTRQGLVIDLELNTVAVALLDQDLPTEGADAVLTGTTPS
IRVGPAIVGRVIDPLGRPIPHLETNLINDKAAADSSLPTISLPMLSSSSS
QHLAPSIMARKPLCHRLRTGIKALDIFHPIGHGQSVGLLGKPGSGKTTLA
LQILANQKPSSSSLPSSLPLTHCIYVAIGQDSRAITRIVDQLTRAGCIES
VTIIAATEDMPPGLRYLAPFAGCAVGEYWRDKGGRALVVFDDLSRHESAY
SEMARFLLKPEVERGLALHGPLLERCAQLSDLKGGGAMTALVLVEGEAVD
GEERAWNQEERESGGHGLAHRINSLVDHAINLNLKLAQRKIFPSVDVTQH
MNLQSPGMALVPEPAKGCVQQLRILWAEALDDEAGAKLAEELGIQAMEEG
EERKVERLEYLERVRVLFEQRREEGGEGGEGMGVDEAGVVLVLLCCLQEE
MLMGLEVGTVRELERVLSQELPRAKGWQKLKAQVEGLARQADARTVAEAF
WEAHMAAQGRGRGEEEGGKEERRGEATLAYVKSVSVGGETQALSQEAGRV
YRRCSDVLTQAINYAQKMQQIAKLMGKGRVGQEAGAGRMQTNVGKRRR*

mRNA from alignment at scaffold_10:99492..101438-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4245 ID=mRNA_4245|Name=jgi.p|Nanoce1779_2|565691|organism=Nannochloropsis oceanica|type=mRNA|length=1947bp|location=Sequence derived from alignment at scaffold_10:99492..101438- (Nannochloropsis oceanica)
ATGGGCGGCGGAGGTGGAGCAGCTCCGCACGCGGACCTCTTTTTAGCCGA
GCTATTTGGCGGCGTCAAGAACAAACCGAGGGAGGGGAGCGTGGTCCAAC
TGCATCAAAACGCCCTAGCACGGATCAGTGGCCTGCGCGAAGCCAGAATA
CACGACCTAGTCATCTTGACGCAGCCCGACGGGAGCACACGACAGGGGCT
GGTGATTGATTTGGAATTGAACACGGTGGCGGTCGCGCTGCTTGACCAGG
ACCTCCCCACGGAAGGGGCTGATGCGGTCTTGACGGGCACCACGCCCAGC
ATCCGCGTGGGCCCAGCCATCGTCGGACGCGTCATCGATCCCTTAGGACG
ACCAATACCACACTTAGAAACAAATCTAATAAACGACAAGGCTGCCGCAG
ACTCCTCCCTTCCGACCATTTCCTTGCCCATGCTCAGCAGCAGCAGCAGC
CAACACCTCGCCCCAAGCATTATGGCCCGCAAACCCCTCTGCCATCGCCT
TCGCACCGGCATCAAAGCCCTCGACATTTTCCACCCAATTGGCCATGGGC
AGAGTGTTGGCCTCCTCGGGAAACCCGGCTCTGGTAAAACCACCCTGGCA
CTCCAAATCCTCGCGAACCAAAAACCCTCCTCCTCCTCCCTCCCGTCCTC
CCTCCCCCTCACCCACTGCATATACGTCGCCATCGGACAAGACTCTCGCG
CCATTACTCGCATCGTGGATCAGCTAACCCGTGCGGGATGTATAGAATCA
GTCACGATAATTGCAGCTACAGAGGACATGCCTCCGGGCTTGAGGTATCT
GGCGCCGTTTGCTGGGTGTGCTGTAGGGGAGTACTGGAGAGACAAGGGTG
GGAGGGCTCTGGTAGTGTTCGACGATTTGAGCAGGCATGAAAGCGCTTAT
AGTGAGATGGCGAGATTTTTATTGAAGCCAGAGGTGGAGAGGGGGTTGGC
ATTGCACGGCCCGTTGCTGGAACGGTGCGCACAGCTGTCGGATCTCAAGG
GAGGGGGAGCGATGACTGCGTTGGTGCTGGTGGAGGGGGAGGCGGTGGAT
GGCGAGGAGAGGGCTTGGAATCAAGAAGAGAGAGAAAGCGGAGGGCATGG
ATTGGCGCATCGGATTAATTCACTCGTGGACCACGCGATTAATTTGAATT
TAAAATTAGCGCAACGGAAGATCTTTCCGTCCGTTGACGTGACCCAGCAT
ATGAATCTGCAGTCGCCGGGGATGGCGCTGGTGCCAGAGCCAGCGAAGGG
ATGTGTGCAGCAGTTGAGAATTTTGTGGGCGGAGGCTTTGGATGATGAGG
CGGGCGCGAAATTGGCGGAGGAGTTAGGGATCCAGGCGATGGAGGAGGGG
GAAGAGAGGAAGGTGGAACGGCTAGAGTATTTGGAGAGGGTGAGGGTGCT
GTTTGAGCAACGGAGGGAGGAAGGGGGGGAGGGAGGGGAAGGAATGGGAG
TGGATGAGGCTGGGGTGGTGTTGGTTTTGCTTTGTTGTTTGCAGGAGGAG
ATGCTGATGGGATTGGAGGTGGGGACGGTGAGGGAGTTAGAACGCGTGTT
ATCGCAAGAGTTACCGCGGGCGAAGGGATGGCAGAAATTAAAGGCGCAAG
TGGAGGGTCTAGCACGACAGGCAGATGCTAGGACGGTGGCGGAGGCGTTC
TGGGAGGCGCACATGGCGGCGCAAGGACGTGGGAGGGGAGAAGAAGAGGG
AGGGAAGGAGGAGAGGAGGGGGGAGGCGACATTGGCGTATGTCAAGTCGG
TGTCGGTTGGAGGGGAGACGCAGGCGTTGAGTCAAGAGGCAGGACGGGTT
TATCGCCGGTGTTCGGATGTGTTGACGCAAGCGATTAATTACGCGCAAAA
AATGCAGCAGATTGCCAAATTGATGGGGAAAGGCCGGGTAGGCCAAGAGG
CCGGGGCAGGGAGGATGCAGACGAATGTGGGGAAGCGCCGGAGGTAG

Coding sequence (CDS) from alignment at scaffold_10:99492..101438-

>mRNA_4245 ID=mRNA_4245|Name=jgi.p|Nanoce1779_2|565691|organism=Nannochloropsis oceanica|type=CDS|length=1947bp|location=Sequence derived from alignment at scaffold_10:99492..101438- (Nannochloropsis oceanica)
ATGGGCGGCGGAGGTGGAGCAGCTCCGCACGCGGACCTCTTTTTAGCCGA
GCTATTTGGCGGCGTCAAGAACAAACCGAGGGAGGGGAGCGTGGTCCAAC
TGCATCAAAACGCCCTAGCACGGATCAGTGGCCTGCGCGAAGCCAGAATA
CACGACCTAGTCATCTTGACGCAGCCCGACGGGAGCACACGACAGGGGCT
GGTGATTGATTTGGAATTGAACACGGTGGCGGTCGCGCTGCTTGACCAGG
ACCTCCCCACGGAAGGGGCTGATGCGGTCTTGACGGGCACCACGCCCAGC
ATCCGCGTGGGCCCAGCCATCGTCGGACGCGTCATCGATCCCTTAGGACG
ACCAATACCACACTTAGAAACAAATCTAATAAACGACAAGGCTGCCGCAG
ACTCCTCCCTTCCGACCATTTCCTTGCCCATGCTCAGCAGCAGCAGCAGC
CAACACCTCGCCCCAAGCATTATGGCCCGCAAACCCCTCTGCCATCGCCT
TCGCACCGGCATCAAAGCCCTCGACATTTTCCACCCAATTGGCCATGGGC
AGAGTGTTGGCCTCCTCGGGAAACCCGGCTCTGGTAAAACCACCCTGGCA
CTCCAAATCCTCGCGAACCAAAAACCCTCCTCCTCCTCCCTCCCGTCCTC
CCTCCCCCTCACCCACTGCATATACGTCGCCATCGGACAAGACTCTCGCG
CCATTACTCGCATCGTGGATCAGCTAACCCGTGCGGGATGTATAGAATCA
GTCACGATAATTGCAGCTACAGAGGACATGCCTCCGGGCTTGAGGTATCT
GGCGCCGTTTGCTGGGTGTGCTGTAGGGGAGTACTGGAGAGACAAGGGTG
GGAGGGCTCTGGTAGTGTTCGACGATTTGAGCAGGCATGAAAGCGCTTAT
AGTGAGATGGCGAGATTTTTATTGAAGCCAGAGGTGGAGAGGGGGTTGGC
ATTGCACGGCCCGTTGCTGGAACGGTGCGCACAGCTGTCGGATCTCAAGG
GAGGGGGAGCGATGACTGCGTTGGTGCTGGTGGAGGGGGAGGCGGTGGAT
GGCGAGGAGAGGGCTTGGAATCAAGAAGAGAGAGAAAGCGGAGGGCATGG
ATTGGCGCATCGGATTAATTCACTCGTGGACCACGCGATTAATTTGAATT
TAAAATTAGCGCAACGGAAGATCTTTCCGTCCGTTGACGTGACCCAGCAT
ATGAATCTGCAGTCGCCGGGGATGGCGCTGGTGCCAGAGCCAGCGAAGGG
ATGTGTGCAGCAGTTGAGAATTTTGTGGGCGGAGGCTTTGGATGATGAGG
CGGGCGCGAAATTGGCGGAGGAGTTAGGGATCCAGGCGATGGAGGAGGGG
GAAGAGAGGAAGGTGGAACGGCTAGAGTATTTGGAGAGGGTGAGGGTGCT
GTTTGAGCAACGGAGGGAGGAAGGGGGGGAGGGAGGGGAAGGAATGGGAG
TGGATGAGGCTGGGGTGGTGTTGGTTTTGCTTTGTTGTTTGCAGGAGGAG
ATGCTGATGGGATTGGAGGTGGGGACGGTGAGGGAGTTAGAACGCGTGTT
ATCGCAAGAGTTACCGCGGGCGAAGGGATGGCAGAAATTAAAGGCGCAAG
TGGAGGGTCTAGCACGACAGGCAGATGCTAGGACGGTGGCGGAGGCGTTC
TGGGAGGCGCACATGGCGGCGCAAGGACGTGGGAGGGGAGAAGAAGAGGG
AGGGAAGGAGGAGAGGAGGGGGGAGGCGACATTGGCGTATGTCAAGTCGG
TGTCGGTTGGAGGGGAGACGCAGGCGTTGAGTCAAGAGGCAGGACGGGTT
TATCGCCGGTGTTCGGATGTGTTGACGCAAGCGATTAATTACGCGCAAAA
AATGCAGCAGATTGCCAAATTGATGGGGAAAGGCCGGGTAGGCCAAGAGG
CCGGGGCAGGGAGGATGCAGACGAATGTGGGGAAGCGCCGGAGGTAG

Synonyms

Publications