jgi.p|Nanoce1779_2|586708, mRNA_4146 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586708
Unique Name	mRNA_4146
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2101
Alignment location	scaffold_8:940647..942951 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586794
Track	FilteredModels2
ProteinId	586708

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:940647..942951 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586708	gene_4146	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586708	mRNA_4146-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4146	CDS_4146	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:940647..942951+
coding sequence from alignment at scaffold_8:940647..942951+

mRNA sequence

>mRNA_4146 ID=mRNA_4146|Name=jgi.p|Nanoce1779_2|586708|organism=Nannochloropsis oceanica|type=mRNA|length=2101bp
GGGGGACGGACGGTACTATAACCGCGAGGCCATCCAGATCATCATCGAGA
TCGCCGCAGCCAACGGCGTGGGCCGTTTATGGATCGGTAAAGGCGGCATC
ATGTCCACCCCTGCCGTTTCCGCTGTCATTCGTGAAAGAGAAGGTGGGGT
GGCGGTTGGAGGGATCATCCTGACGGCTAGTCATAATCCGGGGGGGCCGG
AGGAGGATTTTGGGATTAAGTACAATATGGGAAATGGCGAACCGGCATTG
GAGGCTTTCACGGATGCTGTTTATGCGGCGACACTGAACATTGAGGAGGT
TCAAGTGCTTACAAATTGCCCAAAGGTAAACTTGGACAAGCTGGGTGTGA
CAAGGGTGGGGGATATGGTGGTGGAGGTGATCGATCCCGTGCAAGATTAC
TTGGCCGTCCTAAAAGAGGCCTTTGATTTTGACCTACTTAAGGCCTTCAT
TGCTCGGCCCGGAGGATTCAAACTCGTCTTTGACGCCATGCACGGTGTGG
CAGCCCCTTACGCTCAAGTCGTCCTGGGGCAAGAACTTGGATGCCCTCCC
TCTTCCTTCCTCCATCCCGATTCCAAGGAAGACTTTGGCGGTCTCCATCC
GGACCCCAATTTAGCCTATGCCTCTGATCTGGTTAAGACGATGGGCTTGT
TACCCTCTGGTGCACCTGTCCCTCCCTCGGCAGACAGTGAGGATGTACCC
GACCTGGGGGCAGCTGCTGATGGTGATGCGGATCGGAACATGATATTGGG
TAAGAGGTTTTTTGTGACCCCGTCGGACTCCCTGGCCCTGATCGCCGCAA
ACGCGGAGGCGATCCCTTTTTTTAGGGACCAGGGGGGTTTGAAAACGGTG
GCGAGATCCATGCCCACGAGTCAGGCGGTGGATAGGGTGGCGAAGGCGAA
GGGTTTGAACTGCTTGGAGACACCCACGGGCTGGAAGTATTTTGGGAATT
TGATGGACGCCTTGGCCCTGGGGGGAAAGGAGGAATACAACCCTATTCTG
TGCGGGGAGGAGAGTTTTGGGACAGGCAGTAACCACGTGCGGGAGAAGGA
TGGCTTGTGGGCGGTGCTGGCGTGGTTGTCGGTCTTGGCCCATCATAACC
CCGAGGGAGACGCGCCGCTGAAGCCGGTCAGTGCCATTGTGCAGGAGCAC
TGGGCGGCGTATGGAAGGAACTACTACTGCCGGTACGACTACGAGACTGT
GGACGCCGACGCCGCCAATGCCATGATGGCCCATTTGCGGGCCCCGGATT
TCATGCCCGGGATGACTATAAATGGTTTTACCTTGACAGAGGTGGACGAT
TTTGCGTACACAGACCCAGTGGATGGGAGCCAGGCGACGAAGCAGGGGGT
GAGGTTGATATTTGGGGATGGGACCAGGGCTGTATTCCGTTTGTCAGGCA
CGGGGTCAACGGGAGCGACAGTGAGGATGTACTTGGAGAAGTACGAACCG
GACGTAACCAAACAGGGCTTACCGAGCTCGGAGGTATTGAAACCATTGGC
AGATTTGGCTATCAAATTGGCACGATTGGAAGAGTTTACGGGCCGGACGG
CACCAACAGTGATCACGTAAAAAGTCGAAAGGGGTGGGGGGATAAGTAGA
AGTGTTGTGGTGTTGAAATCAAGTGAAAGAATGAAAAGGTCTGTTGCATA
CGAAAGGTCATTGAGCTTATCTGGCCTCGAGCGGTGGGGTCTACAGTCGA
AGCTCGGTGAAATGTGACCCGGAACGCACGAGAGGGGAAGGAGGGCCGTC
GGCGCTCGTTCCCTCGTACCCATCAGTAGTGACGCCATTGCCAAAATTCC
AATAAATTACCCACTTCTTTTCGCACGACAGAATTCTAATGACAAGTTTT
TCCCTACATATTTTCGAGGAGTGCATGCTCTACGCTGTCGCATATACCAG
ACGCATATCAGCGCCTGGAGGAAGGGGGAAGCGAACGCGCTGAAAATGTG
CAACAAACAATGTGAGGTGTATGAACGATGGCAAAGAGTTCAAAGCTTTT
ACGGTCAAGCTACTGTACGAAACGAGGCCCGGTCAACCGGCTAATTGATA
TCTATCTCGCCTCAACATACTGGTACATAAGCACAAGGCTATTGCTCAGG
C

protein sequence of jgi.p|Nanoce1779_2|586708

>mRNA_4146-protein ID=mRNA_4146-protein|Name=jgi.p|Nanoce1779_2|586708|organism=Nannochloropsis oceanica|type=polypeptide|length=490bp
MSTPAVSAVIREREGGVAVGGIILTASHNPGGPEEDFGIKYNMGNGEPAL
EAFTDAVYAATLNIEEVQVLTNCPKVNLDKLGVTRVGDMVVEVIDPVQDY
LAVLKEAFDFDLLKAFIARPGGFKLVFDAMHGVAAPYAQVVLGQELGCPP
SSFLHPDSKEDFGGLHPDPNLAYASDLVKTMGLLPSGAPVPPSADSEDVP
DLGAAADGDADRNMILGKRFFVTPSDSLALIAANAEAIPFFRDQGGLKTV
ARSMPTSQAVDRVAKAKGLNCLETPTGWKYFGNLMDALALGGKEEYNPIL
CGEESFGTGSNHVREKDGLWAVLAWLSVLAHHNPEGDAPLKPVSAIVQEH
WAAYGRNYYCRYDYETVDADAANAMMAHLRAPDFMPGMTINGFTLTEVDD
FAYTDPVDGSQATKQGVRLIFGDGTRAVFRLSGTGSTGATVRMYLEKYEP
DVTKQGLPSSEVLKPLADLAIKLARLEEFTGRTAPTVIT*

mRNA from alignment at scaffold_8:940647..942951+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4146 ID=mRNA_4146|Name=jgi.p|Nanoce1779_2|586708|organism=Nannochloropsis oceanica|type=mRNA|length=2305bp|location=Sequence derived from alignment at scaffold_8:940647..942951+ (Nannochloropsis oceanica)
GGGGGACGGACGGTACTATAACCGCGAGGCCATCCAGATCATCATCGAGA
TCGCCGCAGCCAACGGCGTGGGCCGTTTATGGATCGGTAAAGGCGGCATC
ATGTCCACCCCTGCCGTTTCCGCTGTCATTCGTGAAAGAGAAGGTGGGGT
GGCGGTTGGAGGGATCATCCTGACGGCTAGTCATAATCCGGGGGGGCCGG
AGGAGGATTTTGGGATTAAGTACAATATGGGAAATGGCGAACCGGCATTG
GAGGCTTTCACGGATGCTGTTTATGCGGCGACACTGAACATTGAGGAGGT
TCAAGTGCTTACAAATTGCCCAAAGGTAAACTTGGACAAGCTGGGTGTGA
CAAGGGTGGGGGATATGGTGGTGGAGGTGATCGATCCCGTGCAAGATTAC
TTGGCCGTCCTAAAAGAGGCCTTTGATTTTGACCTACTTAAGGCCTTCAT
TGCTCGGCCCGGAGGATTCAAACTCGTCTTTGACGCCATGCACGGTGTGG
CAGCCCCTTACGCTCAAGTCGTCCTGGGGCAAGAACTTGGATGCCCTCCC
TCTTCCTTCCTCCATCCCGATTCCAAGGAAGACTTTGGCGGTCTCCATCC
GGACCCCAATTTAGCCTATGCCTCTGATCTGGTTAAGACGATGGGCTTGT
TACCCTCTGGTGCACCTGTCCCTCCCTCGGCAGACAGTGAGGATGTACCC
GACCTGGGGGCAGCTGCTGATGGTGATGCGGATCGGAACATGATATTGGG
TAAGAGGTTTTTTGTGACCCCGTCGGACTCCCTGGCCCTGATCGCCGCAA
ACGCGGAGGCGATCCCTTTTTTTAGGGACCAGGGGGGTTTGAAAACGGTG
GCGAGATCCATGCCCACGAGTCAGGCGGTGGATAGGGTGGCGAAGGCGAA
GGGTTTGAACTGCTTGGAGACACCCACGGGCTGGAAGTATTTTGGGAATT
TGATGGACGCCTTGGCCCTGGGGGGAAAGGAGGAATACAACCCTATTCTG
TGCGGGGAGGAGAGTTTTGGGACAGGCAGTAACCACGTGCGGGAGAAGGA
TGGCTTGTGGGCGGTGCTGGCGTGGTTGTCGGTCTTGGCCCATCATAACC
CCGAGGGAGACGCGCCGCTGAAGCCGGTCAGTGCCATTGTGCAGGAGCAC
TGGGCGGCGTATGGAAGGTTGGTCATGGAGGGAGAGAGGGGAAGCGGCTG
GGGGAGGTTTCTTGTGTTGCATGGACGGTGGAGTGTGGGGGGCTGCGTGT
AATTGTTGCATGTTTGATGCACTCTCTCTTCATGCTCCTCTCCCTCGACC
TTTTGCTCTTTCGGCTTTTGACTTACCCTTTCTACCCTCTTGCCCTCCTT
TCCTCCCTCACTCCCTTTTAGGAACTACTACTGCCGGTACGACTACGAGA
CTGTGGACGCCGACGCCGCCAATGCCATGATGGCCCATTTGCGGGCCCCG
GATTTCATGCCCGGGATGACTATAAATGGTTTTACCTTGACAGAGGTGGA
CGATTTTGCGTACACAGACCCAGTGGATGGGAGCCAGGCGACGAAGCAGG
GGGTGAGGTTGATATTTGGGGATGGGACCAGGGCTGTATTCCGTTTGTCA
GGCACGGGGTCAACGGGAGCGACAGTGAGGATGTACTTGGAGAAGTACGA
ACCGGACGTAACCAAACAGGGCTTACCGAGCTCGGAGGTATTGAAACCAT
TGGCAGATTTGGCTATCAAATTGGCACGATTGGAAGAGTTTACGGGCCGG
ACGGCACCAACAGTGATCACGTAAAAAGTCGAAAGGGGTGGGGGGATAAG
TAGAAGTGTTGTGGTGTTGAAATCAAGTGAAAGAATGAAAAGGTCTGTTG
CATACGAAAGGTCATTGAGCTTATCTGGCCTCGAGCGGTGGGGTCTACAG
TCGAAGCTCGGTGAAATGTGACCCGGAACGCACGAGAGGGGAAGGAGGGC
CGTCGGCGCTCGTTCCCTCGTACCCATCAGTAGTGACGCCATTGCCAAAA
TTCCAATAAATTACCCACTTCTTTTCGCACGACAGAATTCTAATGACAAG
TTTTTCCCTACATATTTTCGAGGAGTGCATGCTCTACGCTGTCGCATATA
CCAGACGCATATCAGCGCCTGGAGGAAGGGGGAAGCGAACGCGCTGAAAA
TGTGCAACAAACAATGTGAGGTGTATGAACGATGGCAAAGAGTTCAAAGC
TTTTACGGTCAAGCTACTGTACGAAACGAGGCCCGGTCAACCGGCTAATT
GATATCTATCTCGCCTCAACATACTGGTACATAAGCACAAGGCTATTGCT
CAGGC

Coding sequence (CDS) from alignment at scaffold_8:940647..942951+

>mRNA_4146 ID=mRNA_4146|Name=jgi.p|Nanoce1779_2|586708|organism=Nannochloropsis oceanica|type=CDS|length=2940bp|location=Sequence derived from alignment at scaffold_8:940647..942951+ (Nannochloropsis oceanica)
ATGTCCACCCCTGCCGTTTCCGCTGTCATTCGTGAAAGAGAAGGTGGGGT
GGCGGTTGGAGGGATCATCCTGACGGCTAGTCATAATCCGGGGGGGCCGG
AGGAGGATTTTGGGATTAAGTACAATATGGGAAATGGCGAACCGGCATTG
GAGGCTTTCACGGATGCTGTTTATGCGGCGACACTGAACATTGAGGAGGT
TCAAGTGCTTACAAATTGCCCAAAGGTAAACTTGGACAAGCTGGGTGTGA
CAAGGGTGGGGGATATGGTGGTGGAGGTGATCGATCCCGTGCAAGATTAC
TTGGCCGTCCTAAAAGAGGCCTTTGATTTTGACCTACTTAAGGCCTTCAT
TGCTCGGCCCGGAGGATTCAAACTCGTCTTTGACGCCATGCACGGTGTGG
CAGCCCCTTACGCTCAAGTCGTCCTGGGGCAAGAACTTGGATGCCCTCCC
TCTTCCTTCCTCCATCCCGATTCCAAGGAAGACTTTGGCGGTCTCCATCC
GGACCCCAATTTAGCCTATGCCTCTGATCTGGTTAAGACGATGGGCTTGT
TACCCTCTGGTGCACCTGTCCCTCCCTCGGCAGACAGTGAGGATGTACCC
GACCTGGGGGCAGCTGCTGATGGTGATGCGGATCGGAACATGATATTGGG
TAAGAGGTTTTTTGTGACCCCGTCGGACTCCCTGGCCCTGATCGCCGCAA
ACGCGGAGGCGATCCCTTTTTTTAGGGACCAGGGGGGTTTGAAAACGGTG
GCGAGATCCATGCCCACGAGTCAGGCGGTGGATAGGGTGGCGAAGGCGAA
GGGTTTGAACTGCTTGGAGACACCCACGGGCTGGAAGTATTTTGGGAATT
TGATGGACGCCTTGGCCCTGGGGGGAAAGGAGGAATACAACCCTATTCTG
TGCGGGGAGGAGAGTTTTGGGACAGGCAGTAACCACGTGCGGGAGAAGGA
TGGCTTGTGGGCGGTGCTGGCGTGGTTGTCGGTCTTGGCCCATCATAACC
CCGAGGGAGACGCGCCGCTGAAGCCGGTCAGTGCCATTGTGCAGGAGCAC
TGGGCGGCGTATGGAAGGAACTACTACTGCCGGTACGACTACGAGACTGT
GGACGCCGACGCCGCCAATGCCATGATGGCCCATTTGCGGGCCCCGGATT
TCATGCCCGGGATGACTATAAATGGTTTTACCTTGACAGAGGTGGACGAT
TTTGCGTACACAGACCCAGTGGATGGGAGCCAGGCGACGAAGCAGGGGGT
GAGGTTGATATTTGGGGATGGGACCAGGGCTGTATTCCGTTTGTCAGGCA
CGGGGTCAACGGGAGCGACAGTGAGGATGTACTTGGAGAAGTACGAACCG
GACGTAACCAAACAGGGCTTACCGAGCTCGGAGGTATTGAAACCATTGGC
AGATTTGGCTATCAAATTGGCACGATTGGAAGAGTTTACGGGCCGGACGG
CACCAACAGTGATCACGTAAATGTCCACCCCTGCCGTTTCCGCTGTCATT
CGTGAAAGAGAAGGTGGGGTGGCGGTTGGAGGGATCATCCTGACGGCTAG
TCATAATCCGGGGGGGCCGGAGGAGGATTTTGGGATTAAGTACAATATGG
GAAATGGCGAACCGGCATTGGAGGCTTTCACGGATGCTGTTTATGCGGCG
ACACTGAACATTGAGGAGGTTCAAGTGCTTACAAATTGCCCAAAGGTAAA
CTTGGACAAGCTGGGTGTGACAAGGGTGGGGGATATGGTGGTGGAGGTGA
TCGATCCCGTGCAAGATTACTTGGCCGTCCTAAAAGAGGCCTTTGATTTT
GACCTACTTAAGGCCTTCATTGCTCGGCCCGGAGGATTCAAACTCGTCTT
TGACGCCATGCACGGTGTGGCAGCCCCTTACGCTCAAGTCGTCCTGGGGC
AAGAACTTGGATGCCCTCCCTCTTCCTTCCTCCATCCCGATTCCAAGGAA
GACTTTGGCGGTCTCCATCCGGACCCCAATTTAGCCTATGCCTCTGATCT
GGTTAAGACGATGGGCTTGTTACCCTCTGGTGCACCTGTCCCTCCCTCGG
CAGACAGTGAGGATGTACCCGACCTGGGGGCAGCTGCTGATGGTGATGCG
GATCGGAACATGATATTGGGTAAGAGGTTTTTTGTGACCCCGTCGGACTC
CCTGGCCCTGATCGCCGCAAACGCGGAGGCGATCCCTTTTTTTAGGGACC
AGGGGGGTTTGAAAACGGTGGCGAGATCCATGCCCACGAGTCAGGCGGTG
GATAGGGTGGCGAAGGCGAAGGGTTTGAACTGCTTGGAGACACCCACGGG
CTGGAAGTATTTTGGGAATTTGATGGACGCCTTGGCCCTGGGGGGAAAGG
AGGAATACAACCCTATTCTGTGCGGGGAGGAGAGTTTTGGGACAGGCAGT
AACCACGTGCGGGAGAAGGATGGCTTGTGGGCGGTGCTGGCGTGGTTGTC
GGTCTTGGCCCATCATAACCCCGAGGGAGACGCGCCGCTGAAGCCGGTCA
GTGCCATTGTGCAGGAGCACTGGGCGGCGTATGGAAGGAACTACTACTGC
CGGTACGACTACGAGACTGTGGACGCCGACGCCGCCAATGCCATGATGGC
CCATTTGCGGGCCCCGGATTTCATGCCCGGGATGACTATAAATGGTTTTA
CCTTGACAGAGGTGGACGATTTTGCGTACACAGACCCAGTGGATGGGAGC
CAGGCGACGAAGCAGGGGGTGAGGTTGATATTTGGGGATGGGACCAGGGC
TGTATTCCGTTTGTCAGGCACGGGGTCAACGGGAGCGACAGTGAGGATGT
ACTTGGAGAAGTACGAACCGGACGTAACCAAACAGGGCTTACCGAGCTCG
GAGGTATTGAAACCATTGGCAGATTTGGCTATCAAATTGGCACGATTGGA
AGAGTTTACGGGCCGGACGGCACCAACAGTGATCACGTAA

Synonyms

Publications