jgi.p|Nanoce1779_2|585970, mRNA_3960 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585970
Unique Name	mRNA_3960
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	4480
Alignment location	scaffold_8:499761..504240 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586056
Track	FilteredModels2
ProteinId	585970

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:499761..504240 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585970	gene_3960	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585970	mRNA_3960-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3960	CDS_3960	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:499761..504240-
coding sequence from alignment at scaffold_8:499761..504240-

mRNA sequence

>mRNA_3960 ID=mRNA_3960|Name=jgi.p|Nanoce1779_2|585970|organism=Nannochloropsis oceanica|type=mRNA|length=4480bp
GGAGGGAGCAATTTAAGTTTAAATGGACCCTTGGGTACATTTCCGGCGCA
GAAATTGTCGAGGGTGGGGGGGCATGTGCGTGGGGTAAGGGAACGATTAA
AGAGGGCGTGGAAATTGTGGTTGGTGAAGCGGAAGCTGAGGGCTTCATTG
TTGACAAGTAAGGGTTCGTCGTCGACTCAATTGGCGATGCCAGATTTTGA
GCGACATTTTGCGAGGTTTGATTTGGAGCACTGTGGGTGGTTGGACCGGA
CTAGGACGGAGTTGTTGTTGAACCGCGGGTTTGACGTCTACTTGAGTCGA
GAGGAATGGGAGTTGGTGGCGGAGAGCTTGGAGGATAAGGTGGTGGGGAA
GGTTGACCTGGCGACCGTCGAACGGTTCTGGATGGAACTAAATGGGATAG
CGATTAAGGCACCGGTGAACTCGGCGTTAGACGTATCCATTCGGGGGGGG
AAAAGCTTGGATTTGTCGCAGAGGGCCGCGAAGGAATTAGCGGTTTTGAA
TGCTGGAGGTTCGAAGAGGCTGGCAGCTGGAGTGGTGATCATGGAGAGGC
GGTCATGGAGTGAAGCGTTGTTGTTTGACAGCAAGGGGCATTTCATTGCC
CTGTGGCGTTTGGTGATGACCTTTAATGCGCTATATTACTTCTTAAGTGT
GCCTTTTATGATTGCATTTTTGAGGGATGAGATTCTGGGGGAATATCGGA
CTTCGCTTTATGTGGCGTATGCGTTTGACTGTTTATTGTTTTGTGACGTT
TTTGTCAAGCTGAACACGAGCTTTCTGGACACAACCTGCAGTGTCTTAGT
GGTGAATCGACAGCGCATCCGCAATCGTTATCTGACAGGTGGATTTTTCC
GGGACTTGATAGGCCTGCTCCCCATCGATATCTTGGTGCGCTACCTTGGG
GCTTCAGGCACTCTAGTGACTTTTATGCGGTTGCCCAAGATGCTCTTCTG
CTACCGCCTCGTCAACTTCTTCAGGCGCCGTTCCCTCTCCTCCTCCTCTC
GTTTGGCCGCCGATTTGCAAGCGTTGTTGTTTTCGGCGCTGGGCATGATC
CACATTTTGACATGCATTTGGTTTTTCATGACGGAGGGAGACCCGGGAAA
TTATCAGGCGTTAAGCGGCTACGAGGATTTTGGGGATTACACAAACCATC
CATCGGGCGGAGGGCCCTTTCGGTTGGAGTACTATTTCTTTTGTTACATG
CTGTTGGCGACCCTGCTTTCGACACAGGCTATTTACGATTTGGTCATGGG
AAGGGTGAGCGAGATTTGTTTCACGATAGTGATTTTATTGTTGAATTTGA
CGGCATGGGCGTATCTGATGGGAACTATTTCGGGTTTGTGCGTGACGGCG
GATGAGTCCATTGCTCAATCCCATGAGCTCATGACGGCCGTTTCTCGCTT
CATCCAGCACAACCCAATGCCGCCCGGAGTCTCTGAAGAGCTGAAAAGCT
ACTTCAATGTGAATGCTCAGCAGAAAACACAGCTCTCCCTTACGGAACAA
ACCGAGATCTACCGCAACCTTCCCCTCTCTCTCCAAGTGGAAGCTGCCCG
GCACATCTCCCGGGACTCTCTCCTGAGCGTCGAAATATTTGAGAAGACCT
CCGATTATTTCCTTGATTCTATATCCACCTTGTTGGACATGGAGATTTTT
GGCGTTGGAGACTACGTGTACAAAGCTGATGATATCTGCCGTTCTCTTTA
CGTGGTTGCCTCCGGGAGTGTGGAGGTTGGGAAAATGAACCCCGAAACGA
ATGAATTTGAGGCAGATGAGATGGCGGGGTCTGGGAGTGCGCTGGGACAG
TTAGAATTTCTGTTTGATGTGCGATATATGAATTCCGCGAGGGTTTCGGG
GGCGGATGGGGTGAGGGTGTTTCGATTGGGCAAGGAAGATTTTACTAGGG
TGATAAAATTGTACCCTATGGATGAAGACATTTTGTATGAGAACTTGTCA
AGGCTGGCGGATGATAAGATGGAGACAGGCTCAAGGGCTCCGAGCATGGC
CCAGAGTATGTCGACGCATTCGCTTGATATGACGGTGATTGCCGGGGATG
ATTTGATTGAGAAAGCTATGGATAGTATTGATAAGGCCCAGAAGCGGAGC
AAGGAACAGCGGATTCGCTCATTTTGCAATGCCGCTGCGGAAGGAAATAT
GGACATTTTGCAGCGGTTGCTGAGGAGTGGGATTGATGTGAATGGCCGAG
ATTGCAATGAGCGGACAGCATTGATGGTAGCCAGCTCTGCAGGGAATTTC
GAGTTGGTTAAATGGTTGGTTTCGTTGGGTGCAGAGGTCAATTTGCAGGA
TAAATTTGGAGGATCGGCATTATCTGATGCCATGCATCAAAACACGCCGG
TGCATATGGAGATCATGGGATTTTTGAGCCAGAGGGGGGCGGTGCTTGAG
TTAGAGGATGCGGCGGGGCAGCTATGCCAGGCGGCGGCGGATGGGGAGCA
GAAAAAGTTGGCACGGATGCTTGAGATGAATATATCACCAAATGTGGCTG
ATTATGATCAGCGGACGCCATTGCACTTGGCAGCATCACAGGGGCATTTG
AATTGTGTAAAGTTATTGCTAAATTTTTGGGCGGATGTGAACCCCATTGA
TCGGATGGGGGGGACGCCTTTATCGGATGCGGTGAGACATGGCCATATTG
CGATTCAGGCGATGCTGAGAGAGCACGGGGGATTGTTGAACATGGATCCG
GTGGAGTTGGGGACGCGTGCATGCGAGGCAGGATCATCTGGGGATTTGGA
TAATATTCGGGTGTTGGTTGATAATGGCGCGGATATAAACACAGGCGATT
ATGATGGGCGGACGGCTTTGCACATGGCGACGTGCTATAATCGGCTAAGT
GTAATTGAGTACTTGGTATCAATTCCTTCGATCAATGTCAACCCCTTGGA
TCGACTGGGGCAGACACCTTTGGACGACGCCAAGCGGGAGGGATTGCCTG
CCATTGTGAATATTTTGCAGGCTCGTGGGGGATTGTCAGGTACTCACCCC
AGTCTCGAAGATCGCATGGTGGAGCAGAAGGAGAAAAAAGCAAGAATGCA
GGGAGCCAAGTTGCAGCAGAGATTATTAGCTGCGCGATTATTTGATGAGT
GGAGCTCAGTGCAAGACGAATTATCAAGGGTGTATAAGTATATGAGTGAG
TACTTGCCACCGCTTTGCAAATATATAAATATTTTGAGCATGACCTTGCG
AAGTCGGCGGACGCAGAGCACGATTGATCGGTCCCCGAAGCCAGATTTGA
TGGAGACTCGGTTGTACTTTTATAATTCGTTCTTGGCTTTCCTGGAGAGG
AGGTACAAGGTAAATTTGGAGTCGTCGATGACATTGGTTGAAGAGATGGA
TGATGCGGGTTCTTTTGAGGATAAGGTCAGGATTGCCAGTCTGATTTTAG
AAAGGTATTTAGATGCCAAGTCCGCTGATCGTGTGCATTTCCACCCGATG
CAGGTGATAGAAGTGAGGGAGAGGTTTCAGGCTGCTTTGAAGAAGCAGGT
ATTCCCCGCGGATTTGTTTGCGGCGTTTCGGGCGAGTGTTGCGGAAAAGA
TGGAGGAGCTCTTGAGCGGGTATTTTGAGAGCGATTTTTACTACCGTGCG
TGTCGGCAGCCAAATGGGTTTCTGTGGCGAGTAATGAAGCTTTCCAGGCT
TATTTATGGGATGTGTGATCAGACGCTGGAGCAGGTCATCGATCCTTTCC
TAGCTTTGTGTGATCGAGATGTCTTGGCATGTGTGCCGCATTATTCTCTC
ATGAACCGTCAGGCTTTTCGGGACGATTTCGTGAAGCTCAAGAGTCATAT
CACCTCCCTCCAGCCGGTTCTGCACATAGTTGGCTATAAATGTAAGCATG
ATGCAATGCGGGAATCGATCAAGGAGCGCAGGGAGAAGCATGGGGGGTTG
GCAGCCATGACGGGTGGGGCAGGAGGAAAGTACAATTAAATGCTGGGTGG
AAGAGAAAGCGGATGATGATGAGAGCCCACGTCAGACTCGTTCCGGAAAG
GAAACGAAAAAGTGATGATGAATTGAGGGAGGAGGTACGGATAAGGAGAA
AAGGAAAGGAGGGAGAAGGAAAAGCAGGATGAGTGTTTTTAAAAGTGTGG
CGTCTATAGGTAAATGGTCAACCGTGTAAAAAAGTATATAAATGGAATGG
ATATATGTGTAATTAAATTTACAATTCTCGAAAAGCAGACACAAACCTGT
AAAAGCAGGCACGTGCACAAACAAACGAATAAATTTACCAGCCTTGGCCA
GTATGGAAGGGGATAATTGAAAAGAATGATCGTACTATGGGAAAGATGCT
CTACTACAAAAGCACAGCAAAAGGTTAGTGCGTGTCTAAGGCACTCTTTC
CTAAATATATGACAAATAAAAACCAATCCAGAGCGGCAACGAAGTTTAGC
ATGCGGCGAATTCTATCCATCCCCTCGTCTGTTTCCCTAATGGAGGTTTC
TTTAGTTTATTCCATCTGATGAGGGGAGAA

protein sequence of jgi.p|Nanoce1779_2|585970

>mRNA_3960-protein ID=mRNA_3960-protein|Name=jgi.p|Nanoce1779_2|585970|organism=Nannochloropsis oceanica|type=polypeptide|length=1251bp
MPDFERHFARFDLEHCGWLDRTRTELLLNRGFDVYLSREEWELVAESLED
KVVGKVDLATVERFWMELNGIAIKAPVNSALDVSIRGGKSLDLSQRAAKE
LAVLNAGGSKRLAAGVVIMERRSWSEALLFDSKGHFIALWRLVMTFNALY
YFLSVPFMIAFLRDEILGEYRTSLYVAYAFDCLLFCDVFVKLNTSFLDTT
CSVLVVNRQRIRNRYLTGGFFRDLIGLLPIDILVRYLGASGTLVTFMRLP
KMLFCYRLVNFFRRRSLSSSSRLAADLQALLFSALGMIHILTCIWFFMTE
GDPGNYQALSGYEDFGDYTNHPSGGGPFRLEYYFFCYMLLATLLSTQAIY
DLVMGRVSEICFTIVILLLNLTAWAYLMGTISGLCVTADESIAQSHELMT
AVSRFIQHNPMPPGVSEELKSYFNVNAQQKTQLSLTEQTEIYRNLPLSLQ
VEAARHISRDSLLSVEIFEKTSDYFLDSISTLLDMEIFGVGDYVYKADDI
CRSLYVVASGSVEVGKMNPETNEFEADEMAGSGSALGQLEFLFDVRYMNS
ARVSGADGVRVFRLGKEDFTRVIKLYPMDEDILYENLSRLADDKMETGSR
APSMAQSMSTHSLDMTVIAGDDLIEKAMDSIDKAQKRSKEQRIRSFCNAA
AEGNMDILQRLLRSGIDVNGRDCNERTALMVASSAGNFELVKWLVSLGAE
VNLQDKFGGSALSDAMHQNTPVHMEIMGFLSQRGAVLELEDAAGQLCQAA
ADGEQKKLARMLEMNISPNVADYDQRTPLHLAASQGHLNCVKLLLNFWAD
VNPIDRMGGTPLSDAVRHGHIAIQAMLREHGGLLNMDPVELGTRACEAGS
SGDLDNIRVLVDNGADINTGDYDGRTALHMATCYNRLSVIEYLVSIPSIN
VNPLDRLGQTPLDDAKREGLPAIVNILQARGGLSGTHPSLEDRMVEQKEK
KARMQGAKLQQRLLAARLFDEWSSVQDELSRVYKYMSEYLPPLCKYINIL
SMTLRSRRTQSTIDRSPKPDLMETRLYFYNSFLAFLERRYKVNLESSMTL
VEEMDDAGSFEDKVRIASLILERYLDAKSADRVHFHPMQVIEVRERFQAA
LKKQVFPADLFAAFRASVAEKMEELLSGYFESDFYYRACRQPNGFLWRVM
KLSRLIYGMCDQTLEQVIDPFLALCDRDVLACVPHYSLMNRQAFRDDFVK
LKSHITSLQPVLHIVGYKCKHDAMRESIKERREKHGGLAAMTGGAGGKYN
*

mRNA from alignment at scaffold_8:499761..504240-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3960 ID=mRNA_3960|Name=jgi.p|Nanoce1779_2|585970|organism=Nannochloropsis oceanica|type=mRNA|length=4480bp|location=Sequence derived from alignment at scaffold_8:499761..504240- (Nannochloropsis oceanica)
GGAGGGAGCAATTTAAGTTTAAATGGACCCTTGGGTACATTTCCGGCGCA
GAAATTGTCGAGGGTGGGGGGGCATGTGCGTGGGGTAAGGGAACGATTAA
AGAGGGCGTGGAAATTGTGGTTGGTGAAGCGGAAGCTGAGGGCTTCATTG
TTGACAAGTAAGGGTTCGTCGTCGACTCAATTGGCGATGCCAGATTTTGA
GCGACATTTTGCGAGGTTTGATTTGGAGCACTGTGGGTGGTTGGACCGGA
CTAGGACGGAGTTGTTGTTGAACCGCGGGTTTGACGTCTACTTGAGTCGA
GAGGAATGGGAGTTGGTGGCGGAGAGCTTGGAGGATAAGGTGGTGGGGAA
GGTTGACCTGGCGACCGTCGAACGGTTCTGGATGGAACTAAATGGGATAG
CGATTAAGGCACCGGTGAACTCGGCGTTAGACGTATCCATTCGGGGGGGG
AAAAGCTTGGATTTGTCGCAGAGGGCCGCGAAGGAATTAGCGGTTTTGAA
TGCTGGAGGTTCGAAGAGGCTGGCAGCTGGAGTGGTGATCATGGAGAGGC
GGTCATGGAGTGAAGCGTTGTTGTTTGACAGCAAGGGGCATTTCATTGCC
CTGTGGCGTTTGGTGATGACCTTTAATGCGCTATATTACTTCTTAAGTGT
GCCTTTTATGATTGCATTTTTGAGGGATGAGATTCTGGGGGAATATCGGA
CTTCGCTTTATGTGGCGTATGCGTTTGACTGTTTATTGTTTTGTGACGTT
TTTGTCAAGCTGAACACGAGCTTTCTGGACACAACCTGCAGTGTCTTAGT
GGTGAATCGACAGCGCATCCGCAATCGTTATCTGACAGGTGGATTTTTCC
GGGACTTGATAGGCCTGCTCCCCATCGATATCTTGGTGCGCTACCTTGGG
GCTTCAGGCACTCTAGTGACTTTTATGCGGTTGCCCAAGATGCTCTTCTG
CTACCGCCTCGTCAACTTCTTCAGGCGCCGTTCCCTCTCCTCCTCCTCTC
GTTTGGCCGCCGATTTGCAAGCGTTGTTGTTTTCGGCGCTGGGCATGATC
CACATTTTGACATGCATTTGGTTTTTCATGACGGAGGGAGACCCGGGAAA
TTATCAGGCGTTAAGCGGCTACGAGGATTTTGGGGATTACACAAACCATC
CATCGGGCGGAGGGCCCTTTCGGTTGGAGTACTATTTCTTTTGTTACATG
CTGTTGGCGACCCTGCTTTCGACACAGGCTATTTACGATTTGGTCATGGG
AAGGGTGAGCGAGATTTGTTTCACGATAGTGATTTTATTGTTGAATTTGA
CGGCATGGGCGTATCTGATGGGAACTATTTCGGGTTTGTGCGTGACGGCG
GATGAGTCCATTGCTCAATCCCATGAGCTCATGACGGCCGTTTCTCGCTT
CATCCAGCACAACCCAATGCCGCCCGGAGTCTCTGAAGAGCTGAAAAGCT
ACTTCAATGTGAATGCTCAGCAGAAAACACAGCTCTCCCTTACGGAACAA
ACCGAGATCTACCGCAACCTTCCCCTCTCTCTCCAAGTGGAAGCTGCCCG
GCACATCTCCCGGGACTCTCTCCTGAGCGTCGAAATATTTGAGAAGACCT
CCGATTATTTCCTTGATTCTATATCCACCTTGTTGGACATGGAGATTTTT
GGCGTTGGAGACTACGTGTACAAAGCTGATGATATCTGCCGTTCTCTTTA
CGTGGTTGCCTCCGGGAGTGTGGAGGTTGGGAAAATGAACCCCGAAACGA
ATGAATTTGAGGCAGATGAGATGGCGGGGTCTGGGAGTGCGCTGGGACAG
TTAGAATTTCTGTTTGATGTGCGATATATGAATTCCGCGAGGGTTTCGGG
GGCGGATGGGGTGAGGGTGTTTCGATTGGGCAAGGAAGATTTTACTAGGG
TGATAAAATTGTACCCTATGGATGAAGACATTTTGTATGAGAACTTGTCA
AGGCTGGCGGATGATAAGATGGAGACAGGCTCAAGGGCTCCGAGCATGGC
CCAGAGTATGTCGACGCATTCGCTTGATATGACGGTGATTGCCGGGGATG
ATTTGATTGAGAAAGCTATGGATAGTATTGATAAGGCCCAGAAGCGGAGC
AAGGAACAGCGGATTCGCTCATTTTGCAATGCCGCTGCGGAAGGAAATAT
GGACATTTTGCAGCGGTTGCTGAGGAGTGGGATTGATGTGAATGGCCGAG
ATTGCAATGAGCGGACAGCATTGATGGTAGCCAGCTCTGCAGGGAATTTC
GAGTTGGTTAAATGGTTGGTTTCGTTGGGTGCAGAGGTCAATTTGCAGGA
TAAATTTGGAGGATCGGCATTATCTGATGCCATGCATCAAAACACGCCGG
TGCATATGGAGATCATGGGATTTTTGAGCCAGAGGGGGGCGGTGCTTGAG
TTAGAGGATGCGGCGGGGCAGCTATGCCAGGCGGCGGCGGATGGGGAGCA
GAAAAAGTTGGCACGGATGCTTGAGATGAATATATCACCAAATGTGGCTG
ATTATGATCAGCGGACGCCATTGCACTTGGCAGCATCACAGGGGCATTTG
AATTGTGTAAAGTTATTGCTAAATTTTTGGGCGGATGTGAACCCCATTGA
TCGGATGGGGGGGACGCCTTTATCGGATGCGGTGAGACATGGCCATATTG
CGATTCAGGCGATGCTGAGAGAGCACGGGGGATTGTTGAACATGGATCCG
GTGGAGTTGGGGACGCGTGCATGCGAGGCAGGATCATCTGGGGATTTGGA
TAATATTCGGGTGTTGGTTGATAATGGCGCGGATATAAACACAGGCGATT
ATGATGGGCGGACGGCTTTGCACATGGCGACGTGCTATAATCGGCTAAGT
GTAATTGAGTACTTGGTATCAATTCCTTCGATCAATGTCAACCCCTTGGA
TCGACTGGGGCAGACACCTTTGGACGACGCCAAGCGGGAGGGATTGCCTG
CCATTGTGAATATTTTGCAGGCTCGTGGGGGATTGTCAGGTACTCACCCC
AGTCTCGAAGATCGCATGGTGGAGCAGAAGGAGAAAAAAGCAAGAATGCA
GGGAGCCAAGTTGCAGCAGAGATTATTAGCTGCGCGATTATTTGATGAGT
GGAGCTCAGTGCAAGACGAATTATCAAGGGTGTATAAGTATATGAGTGAG
TACTTGCCACCGCTTTGCAAATATATAAATATTTTGAGCATGACCTTGCG
AAGTCGGCGGACGCAGAGCACGATTGATCGGTCCCCGAAGCCAGATTTGA
TGGAGACTCGGTTGTACTTTTATAATTCGTTCTTGGCTTTCCTGGAGAGG
AGGTACAAGGTAAATTTGGAGTCGTCGATGACATTGGTTGAAGAGATGGA
TGATGCGGGTTCTTTTGAGGATAAGGTCAGGATTGCCAGTCTGATTTTAG
AAAGGTATTTAGATGCCAAGTCCGCTGATCGTGTGCATTTCCACCCGATG
CAGGTGATAGAAGTGAGGGAGAGGTTTCAGGCTGCTTTGAAGAAGCAGGT
ATTCCCCGCGGATTTGTTTGCGGCGTTTCGGGCGAGTGTTGCGGAAAAGA
TGGAGGAGCTCTTGAGCGGGTATTTTGAGAGCGATTTTTACTACCGTGCG
TGTCGGCAGCCAAATGGGTTTCTGTGGCGAGTAATGAAGCTTTCCAGGCT
TATTTATGGGATGTGTGATCAGACGCTGGAGCAGGTCATCGATCCTTTCC
TAGCTTTGTGTGATCGAGATGTCTTGGCATGTGTGCCGCATTATTCTCTC
ATGAACCGTCAGGCTTTTCGGGACGATTTCGTGAAGCTCAAGAGTCATAT
CACCTCCCTCCAGCCGGTTCTGCACATAGTTGGCTATAAATGTAAGCATG
ATGCAATGCGGGAATCGATCAAGGAGCGCAGGGAGAAGCATGGGGGGTTG
GCAGCCATGACGGGTGGGGCAGGAGGAAAGTACAATTAAATGCTGGGTGG
AAGAGAAAGCGGATGATGATGAGAGCCCACGTCAGACTCGTTCCGGAAAG
GAAACGAAAAAGTGATGATGAATTGAGGGAGGAGGTACGGATAAGGAGAA
AAGGAAAGGAGGGAGAAGGAAAAGCAGGATGAGTGTTTTTAAAAGTGTGG
CGTCTATAGGTAAATGGTCAACCGTGTAAAAAAGTATATAAATGGAATGG
ATATATGTGTAATTAAATTTACAATTCTCGAAAAGCAGACACAAACCTGT
AAAAGCAGGCACGTGCACAAACAAACGAATAAATTTACCAGCCTTGGCCA
GTATGGAAGGGGATAATTGAAAAGAATGATCGTACTATGGGAAAGATGCT
CTACTACAAAAGCACAGCAAAAGGTTAGTGCGTGTCTAAGGCACTCTTTC
CTAAATATATGACAAATAAAAACCAATCCAGAGCGGCAACGAAGTTTAGC
ATGCGGCGAATTCTATCCATCCCCTCGTCTGTTTCCCTAATGGAGGTTTC
TTTAGTTTATTCCATCTGATGAGGGGAGAA

Coding sequence (CDS) from alignment at scaffold_8:499761..504240-

>mRNA_3960 ID=mRNA_3960|Name=jgi.p|Nanoce1779_2|585970|organism=Nannochloropsis oceanica|type=CDS|length=3753bp|location=Sequence derived from alignment at scaffold_8:499761..504240- (Nannochloropsis oceanica)
ATGCCAGATTTTGAGCGACATTTTGCGAGGTTTGATTTGGAGCACTGTGG
GTGGTTGGACCGGACTAGGACGGAGTTGTTGTTGAACCGCGGGTTTGACG
TCTACTTGAGTCGAGAGGAATGGGAGTTGGTGGCGGAGAGCTTGGAGGAT
AAGGTGGTGGGGAAGGTTGACCTGGCGACCGTCGAACGGTTCTGGATGGA
ACTAAATGGGATAGCGATTAAGGCACCGGTGAACTCGGCGTTAGACGTAT
CCATTCGGGGGGGGAAAAGCTTGGATTTGTCGCAGAGGGCCGCGAAGGAA
TTAGCGGTTTTGAATGCTGGAGGTTCGAAGAGGCTGGCAGCTGGAGTGGT
GATCATGGAGAGGCGGTCATGGAGTGAAGCGTTGTTGTTTGACAGCAAGG
GGCATTTCATTGCCCTGTGGCGTTTGGTGATGACCTTTAATGCGCTATAT
TACTTCTTAAGTGTGCCTTTTATGATTGCATTTTTGAGGGATGAGATTCT
GGGGGAATATCGGACTTCGCTTTATGTGGCGTATGCGTTTGACTGTTTAT
TGTTTTGTGACGTTTTTGTCAAGCTGAACACGAGCTTTCTGGACACAACC
TGCAGTGTCTTAGTGGTGAATCGACAGCGCATCCGCAATCGTTATCTGAC
AGGTGGATTTTTCCGGGACTTGATAGGCCTGCTCCCCATCGATATCTTGG
TGCGCTACCTTGGGGCTTCAGGCACTCTAGTGACTTTTATGCGGTTGCCC
AAGATGCTCTTCTGCTACCGCCTCGTCAACTTCTTCAGGCGCCGTTCCCT
CTCCTCCTCCTCTCGTTTGGCCGCCGATTTGCAAGCGTTGTTGTTTTCGG
CGCTGGGCATGATCCACATTTTGACATGCATTTGGTTTTTCATGACGGAG
GGAGACCCGGGAAATTATCAGGCGTTAAGCGGCTACGAGGATTTTGGGGA
TTACACAAACCATCCATCGGGCGGAGGGCCCTTTCGGTTGGAGTACTATT
TCTTTTGTTACATGCTGTTGGCGACCCTGCTTTCGACACAGGCTATTTAC
GATTTGGTCATGGGAAGGGTGAGCGAGATTTGTTTCACGATAGTGATTTT
ATTGTTGAATTTGACGGCATGGGCGTATCTGATGGGAACTATTTCGGGTT
TGTGCGTGACGGCGGATGAGTCCATTGCTCAATCCCATGAGCTCATGACG
GCCGTTTCTCGCTTCATCCAGCACAACCCAATGCCGCCCGGAGTCTCTGA
AGAGCTGAAAAGCTACTTCAATGTGAATGCTCAGCAGAAAACACAGCTCT
CCCTTACGGAACAAACCGAGATCTACCGCAACCTTCCCCTCTCTCTCCAA
GTGGAAGCTGCCCGGCACATCTCCCGGGACTCTCTCCTGAGCGTCGAAAT
ATTTGAGAAGACCTCCGATTATTTCCTTGATTCTATATCCACCTTGTTGG
ACATGGAGATTTTTGGCGTTGGAGACTACGTGTACAAAGCTGATGATATC
TGCCGTTCTCTTTACGTGGTTGCCTCCGGGAGTGTGGAGGTTGGGAAAAT
GAACCCCGAAACGAATGAATTTGAGGCAGATGAGATGGCGGGGTCTGGGA
GTGCGCTGGGACAGTTAGAATTTCTGTTTGATGTGCGATATATGAATTCC
GCGAGGGTTTCGGGGGCGGATGGGGTGAGGGTGTTTCGATTGGGCAAGGA
AGATTTTACTAGGGTGATAAAATTGTACCCTATGGATGAAGACATTTTGT
ATGAGAACTTGTCAAGGCTGGCGGATGATAAGATGGAGACAGGCTCAAGG
GCTCCGAGCATGGCCCAGAGTATGTCGACGCATTCGCTTGATATGACGGT
GATTGCCGGGGATGATTTGATTGAGAAAGCTATGGATAGTATTGATAAGG
CCCAGAAGCGGAGCAAGGAACAGCGGATTCGCTCATTTTGCAATGCCGCT
GCGGAAGGAAATATGGACATTTTGCAGCGGTTGCTGAGGAGTGGGATTGA
TGTGAATGGCCGAGATTGCAATGAGCGGACAGCATTGATGGTAGCCAGCT
CTGCAGGGAATTTCGAGTTGGTTAAATGGTTGGTTTCGTTGGGTGCAGAG
GTCAATTTGCAGGATAAATTTGGAGGATCGGCATTATCTGATGCCATGCA
TCAAAACACGCCGGTGCATATGGAGATCATGGGATTTTTGAGCCAGAGGG
GGGCGGTGCTTGAGTTAGAGGATGCGGCGGGGCAGCTATGCCAGGCGGCG
GCGGATGGGGAGCAGAAAAAGTTGGCACGGATGCTTGAGATGAATATATC
ACCAAATGTGGCTGATTATGATCAGCGGACGCCATTGCACTTGGCAGCAT
CACAGGGGCATTTGAATTGTGTAAAGTTATTGCTAAATTTTTGGGCGGAT
GTGAACCCCATTGATCGGATGGGGGGGACGCCTTTATCGGATGCGGTGAG
ACATGGCCATATTGCGATTCAGGCGATGCTGAGAGAGCACGGGGGATTGT
TGAACATGGATCCGGTGGAGTTGGGGACGCGTGCATGCGAGGCAGGATCA
TCTGGGGATTTGGATAATATTCGGGTGTTGGTTGATAATGGCGCGGATAT
AAACACAGGCGATTATGATGGGCGGACGGCTTTGCACATGGCGACGTGCT
ATAATCGGCTAAGTGTAATTGAGTACTTGGTATCAATTCCTTCGATCAAT
GTCAACCCCTTGGATCGACTGGGGCAGACACCTTTGGACGACGCCAAGCG
GGAGGGATTGCCTGCCATTGTGAATATTTTGCAGGCTCGTGGGGGATTGT
CAGGTACTCACCCCAGTCTCGAAGATCGCATGGTGGAGCAGAAGGAGAAA
AAAGCAAGAATGCAGGGAGCCAAGTTGCAGCAGAGATTATTAGCTGCGCG
ATTATTTGATGAGTGGAGCTCAGTGCAAGACGAATTATCAAGGGTGTATA
AGTATATGAGTGAGTACTTGCCACCGCTTTGCAAATATATAAATATTTTG
AGCATGACCTTGCGAAGTCGGCGGACGCAGAGCACGATTGATCGGTCCCC
GAAGCCAGATTTGATGGAGACTCGGTTGTACTTTTATAATTCGTTCTTGG
CTTTCCTGGAGAGGAGGTACAAGGTAAATTTGGAGTCGTCGATGACATTG
GTTGAAGAGATGGATGATGCGGGTTCTTTTGAGGATAAGGTCAGGATTGC
CAGTCTGATTTTAGAAAGGTATTTAGATGCCAAGTCCGCTGATCGTGTGC
ATTTCCACCCGATGCAGGTGATAGAAGTGAGGGAGAGGTTTCAGGCTGCT
TTGAAGAAGCAGGTATTCCCCGCGGATTTGTTTGCGGCGTTTCGGGCGAG
TGTTGCGGAAAAGATGGAGGAGCTCTTGAGCGGGTATTTTGAGAGCGATT
TTTACTACCGTGCGTGTCGGCAGCCAAATGGGTTTCTGTGGCGAGTAATG
AAGCTTTCCAGGCTTATTTATGGGATGTGTGATCAGACGCTGGAGCAGGT
CATCGATCCTTTCCTAGCTTTGTGTGATCGAGATGTCTTGGCATGTGTGC
CGCATTATTCTCTCATGAACCGTCAGGCTTTTCGGGACGATTTCGTGAAG
CTCAAGAGTCATATCACCTCCCTCCAGCCGGTTCTGCACATAGTTGGCTA
TAAATGTAAGCATGATGCAATGCGGGAATCGATCAAGGAGCGCAGGGAGA
AGCATGGGGGGTTGGCAGCCATGACGGGTGGGGCAGGAGGAAAGTACAAT
TAA

Synonyms

Publications