jgi.p|Nanoce1779_2|585970, gene_3960 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585970
Unique Namegene_3960
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_8:499761..504240 -

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Properties
Property NameValue
TranscriptId586056
ProteinId585970
Product nameexpressed protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:499761..504240 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL004ncniL004Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02520NO10G02520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585970mRNA_3960-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585970mRNA_3960Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|585970

>mRNA_3960-protein ID=mRNA_3960-protein|Name=jgi.p|Nanoce1779_2|585970|organism=Nannochloropsis oceanica|type=polypeptide|length=1251bp
MPDFERHFARFDLEHCGWLDRTRTELLLNRGFDVYLSREEWELVAESLED
KVVGKVDLATVERFWMELNGIAIKAPVNSALDVSIRGGKSLDLSQRAAKE
LAVLNAGGSKRLAAGVVIMERRSWSEALLFDSKGHFIALWRLVMTFNALY
YFLSVPFMIAFLRDEILGEYRTSLYVAYAFDCLLFCDVFVKLNTSFLDTT
CSVLVVNRQRIRNRYLTGGFFRDLIGLLPIDILVRYLGASGTLVTFMRLP
KMLFCYRLVNFFRRRSLSSSSRLAADLQALLFSALGMIHILTCIWFFMTE
GDPGNYQALSGYEDFGDYTNHPSGGGPFRLEYYFFCYMLLATLLSTQAIY
DLVMGRVSEICFTIVILLLNLTAWAYLMGTISGLCVTADESIAQSHELMT
AVSRFIQHNPMPPGVSEELKSYFNVNAQQKTQLSLTEQTEIYRNLPLSLQ
VEAARHISRDSLLSVEIFEKTSDYFLDSISTLLDMEIFGVGDYVYKADDI
CRSLYVVASGSVEVGKMNPETNEFEADEMAGSGSALGQLEFLFDVRYMNS
ARVSGADGVRVFRLGKEDFTRVIKLYPMDEDILYENLSRLADDKMETGSR
APSMAQSMSTHSLDMTVIAGDDLIEKAMDSIDKAQKRSKEQRIRSFCNAA
AEGNMDILQRLLRSGIDVNGRDCNERTALMVASSAGNFELVKWLVSLGAE
VNLQDKFGGSALSDAMHQNTPVHMEIMGFLSQRGAVLELEDAAGQLCQAA
ADGEQKKLARMLEMNISPNVADYDQRTPLHLAASQGHLNCVKLLLNFWAD
VNPIDRMGGTPLSDAVRHGHIAIQAMLREHGGLLNMDPVELGTRACEAGS
SGDLDNIRVLVDNGADINTGDYDGRTALHMATCYNRLSVIEYLVSIPSIN
VNPLDRLGQTPLDDAKREGLPAIVNILQARGGLSGTHPSLEDRMVEQKEK
KARMQGAKLQQRLLAARLFDEWSSVQDELSRVYKYMSEYLPPLCKYINIL
SMTLRSRRTQSTIDRSPKPDLMETRLYFYNSFLAFLERRYKVNLESSMTL
VEEMDDAGSFEDKVRIASLILERYLDAKSADRVHFHPMQVIEVRERFQAA
LKKQVFPADLFAAFRASVAEKMEELLSGYFESDFYYRACRQPNGFLWRVM
KLSRLIYGMCDQTLEQVIDPFLALCDRDVLACVPHYSLMNRQAFRDDFVK
LKSHITSLQPVLHIVGYKCKHDAMRESIKERREKHGGLAAMTGGAGGKYN
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Synonyms
Publications