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Properties
| Property Name | Value |
|---|
| TranscriptId | 415608 |
| Track | FilteredModels2 |
| ProteinId | 415522 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:141076..143609 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3830 ID=mRNA_3830|Name=jgi.p|Nanoce1779_2|415522|organism=Nannochloropsis oceanica|type=mRNA|length=2227bp
GCGGCGAAGCTCAGACGTCCTTCAGAAGGACTCTTCCTACAACTGGGCTA
GGATAGGATGCCCCAGTGTGACTCCTGAGACGCTTTGACGCAGTCAATCG
CTAAAAAAACAACTTTGTACGTACGTCGTTCAGTCATGCCTCCTCGCCTC
CGAAGCAACACCAAGAGCCGCGGCGACAGCACCTGTCCTCCTTCTCCTGA
TAGCAGTAGAAAAGATCTAATGCCACAAGTTAAGGCACCGAGACAACGAC
CGCGTGGGGCAGCAAGGGCAGCATTTGCGGCGTTCGTGACCGAAATCTCC
TTACTTGATCTGCTCCTCCTGGCAGTCATTCTTCTCTATCTCGGCCTCTG
CCCCTACAGCAAGGTGGAAGAAAGCTTCAATATGCAAGCTACACATGACC
TTCTCTTCCTTTCCCCTTTCGCCCCGTCCTCCCTCGCGTCCTACGATCAC
CTCTCCTTCCCCGGCGTCGTCCCTCGCACCTTCTGGGGCCCCATCCTCCT
CGCCCTCCCCATCCATCTCCTCCTCTTCCCCCTCCTCTCTCTCCTCCCAT
CCCCTCTCCACCCTACGACCAAACATCCCTTTCAGCTCATTGTTCGCGGC
CTCCTCGCCCTCTACCTCTGGATCGCCTTCCTCGTCTTCCGCCAAGCCGT
TACCTGGCGTTTCGGTCGTCGCACTGGACAATGCCTCCTCCTCCTCACCC
TCTCCCAGTTCCATCTCCCGTTCTATCTCTCCCGCACCCTCCCCAACACT
TTTGCGCTGGCCTTCGTCCTCCTGTCGTACGCTTGTCTCCTCCGGCGCTC
CTTCACTCCCGCCCTCCTCCTCCTCGCTCTGGCCACTGCTCTCTTCCGTT
GCGACATCATTGTACTCGCCGCGCCCCTCCTCCTCCTCCTCGTCCTCCTC
CGACACCTCTCCTTTTCCCGGCTCCTTGTCTTGGGTCCCGCCTTTGGCCT
GGTGGGTATACTTTTAAGCGTCGTGATCGACTCCCATTTCTGGGGACGGG
GGAGGGAGGGAGGAAGCAGCTGGGTGTGGCCTGAGGGCATGGTTCTGTTT
TTTAATACCGTGGAGAACAAGTCAAGGGAGTGGGGGACTCATCCCTGGCA
CTGGTATGCCTCGTCTGCCCTGCCTCGAGCCTTGCTTGCCTCTCCGTTGC
TGTGGCCATTCTGCCTCTTGCCCCCTCGGAGGGGAGGGAGGGAGGGAGGG
AGGGCAGGAGGGAAGGGCCGTGCCAAGAGCGGCATGATCCTCACCCTCCC
CCTTCCCCGGTCCCTCCCCCTCCTTGAGCTGGACCTGGAACCCTTCCTCC
TTCTCTTTCTCCCCATTGCCGCCTACCTGTCCTTGTATTCGTTGCTACCT
CACAAGGAACTACGCTTCATCTTCCCAGCGCTGCCAGTGCTGAATTTGTG
TGCCGCCGTCGGATGGGCGAGGTTGAGCGAAAGAGGGGAGGAGGGGAGGA
AGGGCAAAGGGGGAAAAGGCAAGTCGCTTTCGATGTCCTCGCTCTCTGTC
CGCTTTTGCTGCGCGTGTTTGCCAGGGTGGGGGGTGATGCTCCTCTCCCT
TTTTACCCTCCCCCTATTCTTGGCCGCTTCGCGCAAAAATTACCCAGGAG
GGGAAGGACTGCGAACCTTCCATGTCGAGATTGTGCCTCCTCTGTTCTCG
ACTTTCCTCCCTTTGGTAACACCGACAGGGAAGGGGGGAGGGAGGGACGG
AGGGAGGGATCAGGTGAAGTTGCACATCGGTGTGCTGGCGGCTCAGACGG
GTGTGTCGCGCTTCGGGGAGGTCTGGAGGGAGGGAGGGAGAGAAAGAGGG
GTGGACGTGGTGTATGACAAGGAAGAAGGGCTGTCATTGCTGGAGCGGAT
GCGACGGTATGATTTCCTGCTGCTGGAGAAAGAAGAGGCGGAGGAGGCCA
TAAGAAAAAGGGAGGAACGGAATGAGGGCGAGAAGGGAAAAGAGTGTGCT
GTGATGAAGTGGGTGGAGGGACTGCCTTGTGCCAGACGACCGAAGGAAAT
CTTGTGGAACCTTAGGAAAGAGCTCATGGAAGTTGCTGCTCGGCTAAAGG
GTAAGAGCGATCGCAGCAGCAGCAGCAGCAGCAGCAAGACTGAGGGATGG
GAGAATATTTTTGTCAAGACGGAACCAGTGCTGGCCCTGGTCATTTGTCA
CTGACACCACAACAGTACGCGGTCCGAGTACAAGTAAACACAATAGTCAC
AAGAAAAGAATGAAATGATGAAAAAAA back to topprotein sequence of jgi.p|Nanoce1779_2|415522 >mRNA_3830-protein ID=mRNA_3830-protein|Name=jgi.p|Nanoce1779_2|415522|organism=Nannochloropsis oceanica|type=polypeptide|length=673bp
MPPRLRSNTKSRGDSTCPPSPDSSRKDLMPQVKAPRQRPRGAARAAFAAF
VTEISLLDLLLLAVILLYLGLCPYSKVEESFNMQATHDLLFLSPFAPSSL
ASYDHLSFPGVVPRTFWGPILLALPIHLLLFPLLSLLPSPLHPTTKHPFQ
LIVRGLLALYLWIAFLVFRQAVTWRFGRRTGQCLLLLTLSQFHLPFYLSR
TLPNTFALAFVLLSYACLLRRSFTPALLLLALATALFRCDIIVLAAPLLL
LLVLLRHLSFSRLLVLGPAFGLVGILLSVVIDSHFWGRGREGGSSWVWPE
GMVLFFNTVENKSREWGTHPWHWYASSALPRALLASPLLWPFCLLPPRRG
GREGGRAGGKGRAKSGMILTLPLPRSLPLLELDLEPFLLLFLPIAAYLSL
YSLLPHKELRFIFPALPVLNLCAAVGWARLSERGEEGRKGKGGKGKSLSM
SSLSVRFCCACLPGWGVMLLSLFTLPLFLAASRKNYPGGEGLRTFHVEIV
PPLFSTFLPLVTPTGKGGGRDGGRDQVKLHIGVLAAQTGVSRFGEVWREG
GRERGVDVVYDKEEGLSLLERMRRYDFLLLEKEEAEEAIRKREERNEGEK
GKECAVMKWVEGLPCARRPKEILWNLRKELMEVAARLKGKSDRSSSSSSS
KTEGWENIFVKTEPVLALVICH* back to topmRNA from alignment at scaffold_8:141076..143609+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3830 ID=mRNA_3830|Name=jgi.p|Nanoce1779_2|415522|organism=Nannochloropsis oceanica|type=mRNA|length=2534bp|location=Sequence derived from alignment at scaffold_8:141076..143609+ (Nannochloropsis oceanica)
GCGGCGAAGCTCAGACGTCCTTCAGAAGGACTCTTCCTACAACTGGTGTG
TGGATTGACGGAGTCCAAAGCTTCATCGGTTACCGCTTTGCCACCACGCG
CCACAAGTCGTACTCCAATCACCACTTCACAACACTCACAGGGCTAGGAT
AGGATGCCCCAGTGTGACTCCTGAGACGCTTTGACGCAGTCAATCGCTAA
AAAAACAACTTTGTACGTACGTCGTTCAGTCATGCCTCCTCGCCTCCGAA
GCAACACCAAGAGCCGCGGCGACAGCACCTGTCCTCCTTCTCCTGATAGC
AGTAGAAAAGATCTAATGCCACAAGTTAAGGCACCGAGACAACGACCGCG
TGGGGCAGCAAGGGCAGCATTTGCGGCGTTCGTGACCGAAATCTCCTTAC
TTGATCTGCTCCTCCTGGCAGTCATTCTTCTCTATCTCGGCCTCTGCCCC
TACAGCAAGGTATGAAAGGGAGGAAGAGAGAGAGGCAGTATGATAGAGAT
GTGTAGAGCAAAAGGAAGGAGAATGGGCTCGTGCCTTTCGTAGCATCCAG
AAAATATGTCTCTCCTCTTAAGCGTCATCAAGGGCCAGGCTGTGCCACTC
TCCCCTCCTCTTGGCACGCAACACAGTCCCCTCATACCCGACCCTCTAAA
TCTCAAATCACCTGCTTTAGGTGGAAGAAAGCTTCAATATGCAAGCTACA
CATGACCTTCTCTTCCTTTCCCCTTTCGCCCCGTCCTCCCTCGCGTCCTA
CGATCACCTCTCCTTCCCCGGCGTCGTCCCTCGCACCTTCTGGGGCCCCA
TCCTCCTCGCCCTCCCCATCCATCTCCTCCTCTTCCCCCTCCTCTCTCTC
CTCCCATCCCCTCTCCACCCTACGACCAAACATCCCTTTCAGCTCATTGT
TCGCGGCCTCCTCGCCCTCTACCTCTGGATCGCCTTCCTCGTCTTCCGCC
AAGCCGTTACCTGGCGTTTCGGTCGTCGCACTGGACAATGCCTCCTCCTC
CTCACCCTCTCCCAGTTCCATCTCCCGTTCTATCTCTCCCGCACCCTCCC
CAACACTTTTGCGCTGGCCTTCGTCCTCCTGTCGTACGCTTGTCTCCTCC
GGCGCTCCTTCACTCCCGCCCTCCTCCTCCTCGCTCTGGCCACTGCTCTC
TTCCGTTGCGACATCATTGTACTCGCCGCGCCCCTCCTCCTCCTCCTCGT
CCTCCTCCGACACCTCTCCTTTTCCCGGCTCCTTGTCTTGGGTCCCGCCT
TTGGCCTGGTGGGTATACTTTTAAGCGTCGTGATCGACTCCCATTTCTGG
GGACGGGGGAGGGAGGGAGGAAGCAGCTGGGTGTGGCCTGAGGGCATGGT
TCTGTTTTTTAATACCGTGGAGAACAAGTCAAGGGAGTGGGGGACTCATC
CCTGGCACTGGTATGCCTCGTCTGCCCTGCCTCGAGCCTTGCTTGCCTCT
CCGTTGCTGTGGCCATTCTGCCTCTTGCCCCCTCGGAGGGGAGGGAGGGA
GGGAGGGAGGGCAGGAGGGAAGGGCCGTGCCAAGAGCGGCATGATCCTCA
CCCTCCCCCTTCCCCGGTCCCTCCCCCTCCTTGAGCTGGACCTGGAACCC
TTCCTCCTTCTCTTTCTCCCCATTGCCGCCTACCTGTCCTTGTATTCGTT
GCTACCTCACAAGGAACTACGCTTCATCTTCCCAGCGCTGCCAGTGCTGA
ATTTGTGTGCCGCCGTCGGATGGGCGAGGTTGAGCGAAAGAGGGGAGGAG
GGGAGGAAGGGCAAAGGGGGAAAAGGCAAGTCGCTTTCGATGTCCTCGCT
CTCTGTCCGCTTTTGCTGCGCGTGTTTGCCAGGGTGGGGGGTGATGCTCC
TCTCCCTTTTTACCCTCCCCCTATTCTTGGCCGCTTCGCGCAAAAATTAC
CCAGGAGGGGAAGGACTGCGAACCTTCCATGTCGAGATTGTGCCTCCTCT
GTTCTCGACTTTCCTCCCTTTGGTAACACCGACAGGGAAGGGGGGAGGGA
GGGACGGAGGGAGGGATCAGGTGAAGTTGCACATCGGTGTGCTGGCGGCT
CAGACGGGTGTGTCGCGCTTCGGGGAGGTCTGGAGGGAGGGAGGGAGAGA
AAGAGGGGTGGACGTGGTGTATGACAAGGAAGAAGGGCTGTCATTGCTGG
AGCGGATGCGACGGTATGATTTCCTGCTGCTGGAGAAAGAAGAGGCGGAG
GAGGCCATAAGAAAAAGGGAGGAACGGAATGAGGGCGAGAAGGGAAAAGA
GTGTGCTGTGATGAAGTGGGTGGAGGGACTGCCTTGTGCCAGACGACCGA
AGGAAATCTTGTGGAACCTTAGGAAAGAGCTCATGGAAGTTGCTGCTCGG
CTAAAGGGTAAGAGCGATCGCAGCAGCAGCAGCAGCAGCAGCAAGACTGA
GGGATGGGAGAATATTTTTGTCAAGACGGAACCAGTGCTGGCCCTGGTCA
TTTGTCACTGACACCACAACAGTACGCGGTCCGAGTACAAGTAAACACAA
TAGTCACAAGAAAAGAATGAAATGATGAAAAAAA back to topCoding sequence (CDS) from alignment at scaffold_8:141076..143609+ >mRNA_3830 ID=mRNA_3830|Name=jgi.p|Nanoce1779_2|415522|organism=Nannochloropsis oceanica|type=CDS|length=4038bp|location=Sequence derived from alignment at scaffold_8:141076..143609+ (Nannochloropsis oceanica)
ATGCCTCCTCGCCTCCGAAGCAACACCAAGAGCCGCGGCGACAGCACCTG
TCCTCCTTCTCCTGATAGCAGTAGAAAAGATCTAATGCCACAAGTTAAGG
CACCGAGACAACGACCGCGTGGGGCAGCAAGGGCAGCATTTGCGGCGTTC
GTGACCGAAATCTCCTTACTTGATCTGCTCCTCCTGGCAGTCATTCTTCT
CTATCTCGGCCTCTGCCCCTACAGCAAGGTGGAAGAAAGCTTCAATATGC
AAGCTACACATGACCTTCTCTTCCTTTCCCCTTTCGCCCCGTCCTCCCTC
GCGTCCTACGATCACCTCTCCTTCCCCGGCGTCGTCCCTCGCACCTTCTG
GGGCCCCATCCTCCTCGCCCTCCCCATCCATCTCCTCCTCTTCCCCCTCC
TCTCTCTCCTCCCATCCCCTCTCCACCCTACGACCAAACATCCCTTTCAG
CTCATTGTTCGCGGCCTCCTCGCCCTCTACCTCTGGATCGCCTTCCTCGT
CTTCCGCCAAGCCGTTACCTGGCGTTTCGGTCGTCGCACTGGACAATGCC
TCCTCCTCCTCACCCTCTCCCAGTTCCATCTCCCGTTCTATCTCTCCCGC
ACCCTCCCCAACACTTTTGCGCTGGCCTTCGTCCTCCTGTCGTACGCTTG
TCTCCTCCGGCGCTCCTTCACTCCCGCCCTCCTCCTCCTCGCTCTGGCCA
CTGCTCTCTTCCGTTGCGACATCATTGTACTCGCCGCGCCCCTCCTCCTC
CTCCTCGTCCTCCTCCGACACCTCTCCTTTTCCCGGCTCCTTGTCTTGGG
TCCCGCCTTTGGCCTGGTGGGTATACTTTTAAGCGTCGTGATCGACTCCC
ATTTCTGGGGACGGGGGAGGGAGGGAGGAAGCAGCTGGGTGTGGCCTGAG
GGCATGGTTCTGTTTTTTAATACCGTGGAGAACAAGTCAAGGGAGTGGGG
GACTCATCCCTGGCACTGGTATGCCTCGTCTGCCCTGCCTCGAGCCTTGC
TTGCCTCTCCGTTGCTGTGGCCATTCTGCCTCTTGCCCCCTCGGAGGGGA
GGGAGGGAGGGAGGGAGGGCAGGAGGGAAGGGCCGTGCCAAGAGCGGCAT
GATCCTCACCCTCCCCCTTCCCCGGTCCCTCCCCCTCCTTGAGCTGGACC
TGGAACCCTTCCTCCTTCTCTTTCTCCCCATTGCCGCCTACCTGTCCTTG
TATTCGTTGCTACCTCACAAGGAACTACGCTTCATCTTCCCAGCGCTGCC
AGTGCTGAATTTGTGTGCCGCCGTCGGATGGGCGAGGTTGAGCGAAAGAG
GGGAGGAGGGGAGGAAGGGCAAAGGGGGAAAAGGCAAGTCGCTTTCGATG
TCCTCGCTCTCTGTCCGCTTTTGCTGCGCGTGTTTGCCAGGGTGGGGGGT
GATGCTCCTCTCCCTTTTTACCCTCCCCCTATTCTTGGCCGCTTCGCGCA
AAAATTACCCAGGAGGGGAAGGACTGCGAACCTTCCATGTCGAGATTGTG
CCTCCTCTGTTCTCGACTTTCCTCCCTTTGGTAACACCGACAGGGAAGGG
GGGAGGGAGGGACGGAGGGAGGGATCAGGTGAAGTTGCACATCGGTGTGC
TGGCGGCTCAGACGGGTGTGTCGCGCTTCGGGGAGGTCTGGAGGGAGGGA
GGGAGAGAAAGAGGGGTGGACGTGGTGTATGACAAGGAAGAAGGGCTGTC
ATTGCTGGAGCGGATGCGACGGTATGATTTCCTGCTGCTGGAGAAAGAAG
AGGCGGAGGAGGCCATAAGAAAAAGGGAGGAACGGAATGAGGGCGAGAAG
GGAAAAGAGTGTGCTGTGATGAAGTGGGTGGAGGGACTGCCTTGTGCCAG
ACGACCGAAGGAAATCTTGTGGAACCTTAGGAAAGAGCTCATGGAAGTTG
CTGCTCGGCTAAAGGGTAAGAGCGATCGCAGCAGCAGCAGCAGCAGCAGC
AAGACTGAGGGATGGGAGAATATTTTTGTCAAGACGGAACCAGTGCTGGC
CCTGGTCATTTGTCACTGAATGCCTCCTCGCCTCCGAAGCAACACCAAGA
GCCGCGGCGACAGCACCTGTCCTCCTTCTCCTGATAGCAGTAGAAAAGAT
CTAATGCCACAAGTTAAGGCACCGAGACAACGACCGCGTGGGGCAGCAAG
GGCAGCATTTGCGGCGTTCGTGACCGAAATCTCCTTACTTGATCTGCTCC
TCCTGGCAGTCATTCTTCTCTATCTCGGCCTCTGCCCCTACAGCAAGGTG
GAAGAAAGCTTCAATATGCAAGCTACACATGACCTTCTCTTCCTTTCCCC
TTTCGCCCCGTCCTCCCTCGCGTCCTACGATCACCTCTCCTTCCCCGGCG
TCGTCCCTCGCACCTTCTGGGGCCCCATCCTCCTCGCCCTCCCCATCCAT
CTCCTCCTCTTCCCCCTCCTCTCTCTCCTCCCATCCCCTCTCCACCCTAC
GACCAAACATCCCTTTCAGCTCATTGTTCGCGGCCTCCTCGCCCTCTACC
TCTGGATCGCCTTCCTCGTCTTCCGCCAAGCCGTTACCTGGCGTTTCGGT
CGTCGCACTGGACAATGCCTCCTCCTCCTCACCCTCTCCCAGTTCCATCT
CCCGTTCTATCTCTCCCGCACCCTCCCCAACACTTTTGCGCTGGCCTTCG
TCCTCCTGTCGTACGCTTGTCTCCTCCGGCGCTCCTTCACTCCCGCCCTC
CTCCTCCTCGCTCTGGCCACTGCTCTCTTCCGTTGCGACATCATTGTACT
CGCCGCGCCCCTCCTCCTCCTCCTCGTCCTCCTCCGACACCTCTCCTTTT
CCCGGCTCCTTGTCTTGGGTCCCGCCTTTGGCCTGGTGGGTATACTTTTA
AGCGTCGTGATCGACTCCCATTTCTGGGGACGGGGGAGGGAGGGAGGAAG
CAGCTGGGTGTGGCCTGAGGGCATGGTTCTGTTTTTTAATACCGTGGAGA
ACAAGTCAAGGGAGTGGGGGACTCATCCCTGGCACTGGTATGCCTCGTCT
GCCCTGCCTCGAGCCTTGCTTGCCTCTCCGTTGCTGTGGCCATTCTGCCT
CTTGCCCCCTCGGAGGGGAGGGAGGGAGGGAGGGAGGGCAGGAGGGAAGG
GCCGTGCCAAGAGCGGCATGATCCTCACCCTCCCCCTTCCCCGGTCCCTC
CCCCTCCTTGAGCTGGACCTGGAACCCTTCCTCCTTCTCTTTCTCCCCAT
TGCCGCCTACCTGTCCTTGTATTCGTTGCTACCTCACAAGGAACTACGCT
TCATCTTCCCAGCGCTGCCAGTGCTGAATTTGTGTGCCGCCGTCGGATGG
GCGAGGTTGAGCGAAAGAGGGGAGGAGGGGAGGAAGGGCAAAGGGGGAAA
AGGCAAGTCGCTTTCGATGTCCTCGCTCTCTGTCCGCTTTTGCTGCGCGT
GTTTGCCAGGGTGGGGGGTGATGCTCCTCTCCCTTTTTACCCTCCCCCTA
TTCTTGGCCGCTTCGCGCAAAAATTACCCAGGAGGGGAAGGACTGCGAAC
CTTCCATGTCGAGATTGTGCCTCCTCTGTTCTCGACTTTCCTCCCTTTGG
TAACACCGACAGGGAAGGGGGGAGGGAGGGACGGAGGGAGGGATCAGGTG
AAGTTGCACATCGGTGTGCTGGCGGCTCAGACGGGTGTGTCGCGCTTCGG
GGAGGTCTGGAGGGAGGGAGGGAGAGAAAGAGGGGTGGACGTGGTGTATG
ACAAGGAAGAAGGGCTGTCATTGCTGGAGCGGATGCGACGGTATGATTTC
CTGCTGCTGGAGAAAGAAGAGGCGGAGGAGGCCATAAGAAAAAGGGAGGA
ACGGAATGAGGGCGAGAAGGGAAAAGAGTGTGCTGTGATGAAGTGGGTGG
AGGGACTGCCTTGTGCCAGACGACCGAAGGAAATCTTGTGGAACCTTAGG
AAAGAGCTCATGGAAGTTGCTGCTCGGCTAAAGGGTAAGAGCGATCGCAG
CAGCAGCAGCAGCAGCAGCAAGACTGAGGGATGGGAGAATATTTTTGTCA
AGACGGAACCAGTGCTGGCCCTGGTCATTTGTCACTGA back to top
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