jgi.p|Nanoce1779_2|583394, mRNA_3777 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583394
Unique Name	mRNA_3777
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2167
Alignment location	scaffold_6:1229765..1231931 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	583480
Track	FilteredModels2
ProteinId	583394

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:1229765..1231931 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583394	gene_3777	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3777	CDS_3777	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583394	mRNA_3777-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:1229765..1231931-
coding sequence from alignment at scaffold_6:1229765..1231931-

mRNA sequence

>mRNA_3777 ID=mRNA_3777|Name=jgi.p|Nanoce1779_2|583394|organism=Nannochloropsis oceanica|type=mRNA|length=2167bp
ATGCCTTGGTCCTTATTTCCTCCGCCTGCCCTCATCCCTGCCCTGGGCTC
CACCCTCCCGTCCCACGCCGCCCATGACCGGGCCACCGACGCGCAAGCCC
AGCTCAGGGCTCACATCCTGTCCTGCCAACGCCACCTCAACAACCACAAC
CATCACCACAGCCACTTCGATAAGTACCAACTGCAGCAGCAGCAGTGGGA
GGGATGGTTGCGTGCGGCCCTAGGCCTCGCCAATATCGTTGCCCGGGTCC
GCGTCCTAGAAGTGCTAGCCTCCATTGAGGCGATTTCTGGGGAGATGAAC
GGAAGGGGAGGGAAAGGAGCAGGTGGCAGGATGTTGCTGATGCTACCACT
TCCCTCCTCTTCTTCAAATGTGAGCGCGGAAATGCCACCGTCGCCCCACG
AAGCACGGCAAGAGGAGCAGGATCAGCACCAACACCAGTACCAGCACCAG
CACCAGCAGCAATACGAGGCCGTGCCTTCATCACCGCCTTCGCTCCCACC
GCCTTTTTCTTTATCGGCGGCCTGCTTGTTATTGCGAGAGATCAAGCATT
TCCTGGAGGCGTACGTAGATGAAGAGGAAGAGGAGGAGAAGGGAGAGGAA
ATCGAGGGAGTTGAGAAGGACGAGGTTAAGGAGGATGAAGTGGAGAAGGA
GGGTCGTCCAGAGCATAAATATGGCGAGAAATCAGTCCTCGACTGCCTTT
TGACTTGCATGGGTCGGCTGGCCAGAGATGCCGCTGACAGGAAAAAGCAG
GAGGGCAGCAGCAGCAGCAGCAGTGAGGACGTGCTTGAAACTCTGAAGAC
CCAGTACATTGACGGTCTCTGTCCCCTCTGGCTAAATCTGGCCCGACGAC
CCTCTTCCCCCTCTTCTTCTACAACAGCAACCACAGCTGCAGCTGACGCC
TCCCTCTCTTTGTCGCGCTCCGACGCTTCATCTTTGCCTCATGCCAAGCT
CAATGGCAGGACAGGTGCGCGGGCAAGCAGCATCAGCAGCAGGAGGAGCA
GCTCGAGCATTAATGGGTACATGGTTCAGAGAAGCAGAAGAACGTATGTG
GCCTTGCAGCTTCTCACCCGGCTGTTAATGCAGGCACCCTGCCTGTTCCA
ATCTACCTTTCCCTCTTCCCCTTCTTCCCCGTCTCATTTTAGGTCTGATG
GACCTCAGCAGCAGCAGCAGCAGTTGGAGAAAAGGGAAACGGAGGATCGC
GAGAAAGAAGATGGAAGGAGAAAGAAGGAGGTTGGGATGTATGTGGGAGT
AGAGAAGGCATTGTGTCTCTTCGAGCGGCTCTTTTTTCCGGAAGGAGAAG
AGGGAGGAGGGGGGGCAGCAGGAAGGGGAGGAGAAGGAATCTTGTATAAC
TCTGACAGGCGATTGCGAGTAGTGGCTAATGCGACATTGGCTGCGTTTCT
GGCCTACGAGCAAGAAGGAGGGGAATGGTGGAAAAGGGAGAAAGACAACA
GCGGCTCGCCATCCCTGTCGTCCCTGCTTTTCAAAGAGGCAGTGGGAGTC
CTACTCCTTCCTCCCCCTTCCGCCTGCACCGCCACAGCTGTTGCTGCAGC
GAGCACCGCTACCGCTCCTCCCAACCCCACCAGCCGGTCTCGCTTCCGTT
CTTTTCGCTCTTCTTCCTTTGTGGCTTCACCCACTGCTGCCACTGCTGCT
GCCGCAGCTACTGCTGCAGGCACTGCTTCGTCATCTGCGGCTGTTCAGGA
CAGGACACACGCCGCCCTGCTCCTACTTCGGACCCTCCTGGTCGACCCTC
TCCTAGGCAAGGACGACGACAACAGCAAGACAAAGGAGGAAGAGGAAGAA
GGAAACAAGATGGTGATGGCCTTGTCTCCCTCGCCCCTCCTCTCCCCCCA
CGCCCATCTCTCCCTCTGTTCTCGTGTAATCGACCTCCTCTCCTCCCAGC
CCTCCTTCCCCTCCCCTTTCCTCCTCCAAGCCGCATGGGCCGTCATTCCC
TCCCTGGCCGCTACAGGCCCGGGACCGCTTGCCTTCTGGCAAGCGCACTC
GGCCCGCCTCGTTCCTCTCCTCCTCTCTGCCACTGCCGGGGAAGGGGGAG
GGAACAGGGGACGAGCAACGGCAGCAGCGGCTTTCGAGTGTCTGGGCGGT
ATGGCCGTGCTTCTTGGTCCAGCCTTATTCTCGAGAGTAGAAGAGGAGGG
AGGGAAGGAGGGAGGGA

protein sequence of jgi.p|Nanoce1779_2|583394

>mRNA_3777-protein ID=mRNA_3777-protein|Name=jgi.p|Nanoce1779_2|583394|organism=Nannochloropsis oceanica|type=polypeptide|length=722bp
MPWSLFPPPALIPALGSTLPSHAAHDRATDAQAQLRAHILSCQRHLNNHN
HHHSHFDKYQLQQQQWEGWLRAALGLANIVARVRVLEVLASIEAISGEMN
GRGGKGAGGRMLLMLPLPSSSSNVSAEMPPSPHEARQEEQDQHQHQYQHQ
HQQQYEAVPSSPPSLPPPFSLSAACLLLREIKHFLEAYVDEEEEEEKGEE
IEGVEKDEVKEDEVEKEGRPEHKYGEKSVLDCLLTCMGRLARDAADRKKQ
EGSSSSSSEDVLETLKTQYIDGLCPLWLNLARRPSSPSSSTTATTAAADA
SLSLSRSDASSLPHAKLNGRTGARASSISSRRSSSSINGYMVQRSRRTYV
ALQLLTRLLMQAPCLFQSTFPSSPSSPSHFRSDGPQQQQQQLEKRETEDR
EKEDGRRKKEVGMYVGVEKALCLFERLFFPEGEEGGGGAAGRGGEGILYN
SDRRLRVVANATLAAFLAYEQEGGEWWKREKDNSGSPSLSSLLFKEAVGV
LLLPPPSACTATAVAAASTATAPPNPTSRSRFRSFRSSSFVASPTAATAA
AAATAAGTASSSAAVQDRTHAALLLLRTLLVDPLLGKDDDNSKTKEEEEE
GNKMVMALSPSPLLSPHAHLSLCSRVIDLLSSQPSFPSPFLLQAAWAVIP
SLAATGPGPLAFWQAHSARLVPLLLSATAGEGGGNRGRATAAAAFECLGG
MAVLLGPALFSRVEEEGGKEGG

mRNA from alignment at scaffold_6:1229765..1231931-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3777 ID=mRNA_3777|Name=jgi.p|Nanoce1779_2|583394|organism=Nannochloropsis oceanica|type=mRNA|length=2167bp|location=Sequence derived from alignment at scaffold_6:1229765..1231931- (Nannochloropsis oceanica)
ATGCCTTGGTCCTTATTTCCTCCGCCTGCCCTCATCCCTGCCCTGGGCTC
CACCCTCCCGTCCCACGCCGCCCATGACCGGGCCACCGACGCGCAAGCCC
AGCTCAGGGCTCACATCCTGTCCTGCCAACGCCACCTCAACAACCACAAC
CATCACCACAGCCACTTCGATAAGTACCAACTGCAGCAGCAGCAGTGGGA
GGGATGGTTGCGTGCGGCCCTAGGCCTCGCCAATATCGTTGCCCGGGTCC
GCGTCCTAGAAGTGCTAGCCTCCATTGAGGCGATTTCTGGGGAGATGAAC
GGAAGGGGAGGGAAAGGAGCAGGTGGCAGGATGTTGCTGATGCTACCACT
TCCCTCCTCTTCTTCAAATGTGAGCGCGGAAATGCCACCGTCGCCCCACG
AAGCACGGCAAGAGGAGCAGGATCAGCACCAACACCAGTACCAGCACCAG
CACCAGCAGCAATACGAGGCCGTGCCTTCATCACCGCCTTCGCTCCCACC
GCCTTTTTCTTTATCGGCGGCCTGCTTGTTATTGCGAGAGATCAAGCATT
TCCTGGAGGCGTACGTAGATGAAGAGGAAGAGGAGGAGAAGGGAGAGGAA
ATCGAGGGAGTTGAGAAGGACGAGGTTAAGGAGGATGAAGTGGAGAAGGA
GGGTCGTCCAGAGCATAAATATGGCGAGAAATCAGTCCTCGACTGCCTTT
TGACTTGCATGGGTCGGCTGGCCAGAGATGCCGCTGACAGGAAAAAGCAG
GAGGGCAGCAGCAGCAGCAGCAGTGAGGACGTGCTTGAAACTCTGAAGAC
CCAGTACATTGACGGTCTCTGTCCCCTCTGGCTAAATCTGGCCCGACGAC
CCTCTTCCCCCTCTTCTTCTACAACAGCAACCACAGCTGCAGCTGACGCC
TCCCTCTCTTTGTCGCGCTCCGACGCTTCATCTTTGCCTCATGCCAAGCT
CAATGGCAGGACAGGTGCGCGGGCAAGCAGCATCAGCAGCAGGAGGAGCA
GCTCGAGCATTAATGGGTACATGGTTCAGAGAAGCAGAAGAACGTATGTG
GCCTTGCAGCTTCTCACCCGGCTGTTAATGCAGGCACCCTGCCTGTTCCA
ATCTACCTTTCCCTCTTCCCCTTCTTCCCCGTCTCATTTTAGGTCTGATG
GACCTCAGCAGCAGCAGCAGCAGTTGGAGAAAAGGGAAACGGAGGATCGC
GAGAAAGAAGATGGAAGGAGAAAGAAGGAGGTTGGGATGTATGTGGGAGT
AGAGAAGGCATTGTGTCTCTTCGAGCGGCTCTTTTTTCCGGAAGGAGAAG
AGGGAGGAGGGGGGGCAGCAGGAAGGGGAGGAGAAGGAATCTTGTATAAC
TCTGACAGGCGATTGCGAGTAGTGGCTAATGCGACATTGGCTGCGTTTCT
GGCCTACGAGCAAGAAGGAGGGGAATGGTGGAAAAGGGAGAAAGACAACA
GCGGCTCGCCATCCCTGTCGTCCCTGCTTTTCAAAGAGGCAGTGGGAGTC
CTACTCCTTCCTCCCCCTTCCGCCTGCACCGCCACAGCTGTTGCTGCAGC
GAGCACCGCTACCGCTCCTCCCAACCCCACCAGCCGGTCTCGCTTCCGTT
CTTTTCGCTCTTCTTCCTTTGTGGCTTCACCCACTGCTGCCACTGCTGCT
GCCGCAGCTACTGCTGCAGGCACTGCTTCGTCATCTGCGGCTGTTCAGGA
CAGGACACACGCCGCCCTGCTCCTACTTCGGACCCTCCTGGTCGACCCTC
TCCTAGGCAAGGACGACGACAACAGCAAGACAAAGGAGGAAGAGGAAGAA
GGAAACAAGATGGTGATGGCCTTGTCTCCCTCGCCCCTCCTCTCCCCCCA
CGCCCATCTCTCCCTCTGTTCTCGTGTAATCGACCTCCTCTCCTCCCAGC
CCTCCTTCCCCTCCCCTTTCCTCCTCCAAGCCGCATGGGCCGTCATTCCC
TCCCTGGCCGCTACAGGCCCGGGACCGCTTGCCTTCTGGCAAGCGCACTC
GGCCCGCCTCGTTCCTCTCCTCCTCTCTGCCACTGCCGGGGAAGGGGGAG
GGAACAGGGGACGAGCAACGGCAGCAGCGGCTTTCGAGTGTCTGGGCGGT
ATGGCCGTGCTTCTTGGTCCAGCCTTATTCTCGAGAGTAGAAGAGGAGGG
AGGGAAGGAGGGAGGGA

Coding sequence (CDS) from alignment at scaffold_6:1229765..1231931-

>mRNA_3777 ID=mRNA_3777|Name=jgi.p|Nanoce1779_2|583394|organism=Nannochloropsis oceanica|type=CDS|length=2167bp|location=Sequence derived from alignment at scaffold_6:1229765..1231931- (Nannochloropsis oceanica)
ATGCCTTGGTCCTTATTTCCTCCGCCTGCCCTCATCCCTGCCCTGGGCTC
CACCCTCCCGTCCCACGCCGCCCATGACCGGGCCACCGACGCGCAAGCCC
AGCTCAGGGCTCACATCCTGTCCTGCCAACGCCACCTCAACAACCACAAC
CATCACCACAGCCACTTCGATAAGTACCAACTGCAGCAGCAGCAGTGGGA
GGGATGGTTGCGTGCGGCCCTAGGCCTCGCCAATATCGTTGCCCGGGTCC
GCGTCCTAGAAGTGCTAGCCTCCATTGAGGCGATTTCTGGGGAGATGAAC
GGAAGGGGAGGGAAAGGAGCAGGTGGCAGGATGTTGCTGATGCTACCACT
TCCCTCCTCTTCTTCAAATGTGAGCGCGGAAATGCCACCGTCGCCCCACG
AAGCACGGCAAGAGGAGCAGGATCAGCACCAACACCAGTACCAGCACCAG
CACCAGCAGCAATACGAGGCCGTGCCTTCATCACCGCCTTCGCTCCCACC
GCCTTTTTCTTTATCGGCGGCCTGCTTGTTATTGCGAGAGATCAAGCATT
TCCTGGAGGCGTACGTAGATGAAGAGGAAGAGGAGGAGAAGGGAGAGGAA
ATCGAGGGAGTTGAGAAGGACGAGGTTAAGGAGGATGAAGTGGAGAAGGA
GGGTCGTCCAGAGCATAAATATGGCGAGAAATCAGTCCTCGACTGCCTTT
TGACTTGCATGGGTCGGCTGGCCAGAGATGCCGCTGACAGGAAAAAGCAG
GAGGGCAGCAGCAGCAGCAGCAGTGAGGACGTGCTTGAAACTCTGAAGAC
CCAGTACATTGACGGTCTCTGTCCCCTCTGGCTAAATCTGGCCCGACGAC
CCTCTTCCCCCTCTTCTTCTACAACAGCAACCACAGCTGCAGCTGACGCC
TCCCTCTCTTTGTCGCGCTCCGACGCTTCATCTTTGCCTCATGCCAAGCT
CAATGGCAGGACAGGTGCGCGGGCAAGCAGCATCAGCAGCAGGAGGAGCA
GCTCGAGCATTAATGGGTACATGGTTCAGAGAAGCAGAAGAACGTATGTG
GCCTTGCAGCTTCTCACCCGGCTGTTAATGCAGGCACCCTGCCTGTTCCA
ATCTACCTTTCCCTCTTCCCCTTCTTCCCCGTCTCATTTTAGGTCTGATG
GACCTCAGCAGCAGCAGCAGCAGTTGGAGAAAAGGGAAACGGAGGATCGC
GAGAAAGAAGATGGAAGGAGAAAGAAGGAGGTTGGGATGTATGTGGGAGT
AGAGAAGGCATTGTGTCTCTTCGAGCGGCTCTTTTTTCCGGAAGGAGAAG
AGGGAGGAGGGGGGGCAGCAGGAAGGGGAGGAGAAGGAATCTTGTATAAC
TCTGACAGGCGATTGCGAGTAGTGGCTAATGCGACATTGGCTGCGTTTCT
GGCCTACGAGCAAGAAGGAGGGGAATGGTGGAAAAGGGAGAAAGACAACA
GCGGCTCGCCATCCCTGTCGTCCCTGCTTTTCAAAGAGGCAGTGGGAGTC
CTACTCCTTCCTCCCCCTTCCGCCTGCACCGCCACAGCTGTTGCTGCAGC
GAGCACCGCTACCGCTCCTCCCAACCCCACCAGCCGGTCTCGCTTCCGTT
CTTTTCGCTCTTCTTCCTTTGTGGCTTCACCCACTGCTGCCACTGCTGCT
GCCGCAGCTACTGCTGCAGGCACTGCTTCGTCATCTGCGGCTGTTCAGGA
CAGGACACACGCCGCCCTGCTCCTACTTCGGACCCTCCTGGTCGACCCTC
TCCTAGGCAAGGACGACGACAACAGCAAGACAAAGGAGGAAGAGGAAGAA
GGAAACAAGATGGTGATGGCCTTGTCTCCCTCGCCCCTCCTCTCCCCCCA
CGCCCATCTCTCCCTCTGTTCTCGTGTAATCGACCTCCTCTCCTCCCAGC
CCTCCTTCCCCTCCCCTTTCCTCCTCCAAGCCGCATGGGCCGTCATTCCC
TCCCTGGCCGCTACAGGCCCGGGACCGCTTGCCTTCTGGCAAGCGCACTC
GGCCCGCCTCGTTCCTCTCCTCCTCTCTGCCACTGCCGGGGAAGGGGGAG
GGAACAGGGGACGAGCAACGGCAGCAGCGGCTTTCGAGTGTCTGGGCGGT
ATGGCCGTGCTTCTTGGTCCAGCCTTATTCTCGAGAGTAGAAGAGGAGGG
AGGGAAGGAGGGAGGGA

Synonyms

Publications