jgi.p|Nanoce1779_2|577142, mRNA_377 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577142
Unique NamemRNA_377
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1468
Alignment locationscaffold_3:938497..939964 +

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Properties
Property NameValue
TranscriptId577228
TrackFilteredModels2
ProteinId577142
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:938497..939964 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577142gene_377Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577142mRNA_377-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_377CDS_377Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_377 ID=mRNA_377|Name=jgi.p|Nanoce1779_2|577142|organism=Nannochloropsis oceanica|type=mRNA|length=1468bp
ACAGGAAACGAAACACGCTACTTTGTTGCCCCTTCACGCCAGCGCCCGCC
TGCTTTTCGTTGTCTGTAACAATCGTCATCATCCAGCATATCCAGCATGC
CGAGCAGCATCAGTACAAGCAACAGCGGCGGCAGTGCCAAGCCAGGGTGG
GCCCTCGTCCGTAACAAGGTCTCAAATTATTGTTTTGTTGCACTATGGTT
GGCAGCGACCGCCTCTCTAACCCAAGCCTTCCTTAATCCTGCCGTCCCCG
CCGCCACGTCCGTGATGAGGCCCACTTCGCGAAGAATAAAGCAGCGCGCT
CTGCACATGGTGTTAGACTCGTTTATCAAGACCAAACTCGACAGCTTCTC
CCGCACGTACAAGGAGTTGACCGAGCGCCTGGGGGACCCGGATGTGATTG
CCAACCCTACCACGCTCATGCAGGTGAACCAAGAGCGCATGAACATTGAA
GACGTTGTGGTGAATTACCAGGAATGGCAAAAACTCGCAGAGGACTTGGT
GGGGGCCAAGCAACTGTTCAATGAAGCAGCAGGGGACCCGGAAATGAAAG
AGATGGCACGATTGGAAATCAAGGAGCTGGAGGAGAAACAGGAAATGATT
GAGAAGAAGCTTGTAGTGTTGATGCTGCCCACTGACCCCTTGGACGACCG
CAACGTGATGTTGGAAATTCGGGCGGGCACGGGAGGGAGCGAGGCAGGAC
TATTTGCTGGGGATCTGATCGATGTTTATCAGCGGTATGGACAGACTTTG
GGCTGGCGGGTGCGCATCGTTGAAGAGTCCAAGAACGACGAAGGAGGGTA
CAAGAATGCGGTGTTGGAGATCCAGGGAGAAAAAGTCTATTCGAAGCTTA
AGTTTGAGGCGGGCGTGCATCGTGTGCAGCGAGTACCGGCGACTGAGACA
CAGGGGCGGGTACATACCAGTACTGCGACTGTGGCCGTCATGCCTGAGGT
GGACGATGTGCAAGTGAAGATTGACCCCAAGGATATAACATTGACAACGG
CCCGCTCAGGGGGCTCGGGGGGACAGAACGTGAACAAGGTCGAAACGGCA
ATTGACCTATTTCACAAACCCTCAGGCATCCGTATTTTCTGCACGCAAGA
GCGGTCGCAGCTCAAGAATAAGGAGCTGGCGTTGACCATGTTAAGGTCAC
GTTTGTTTGCGTTGGAGCAGGAGAAGCAACGTGAGGCGGTGGCAGGGCAG
CGGCGATCGCAGATCGGCTCGGGGAGTAGGTCAGAGAAGATTAGGACGTA
TAATTGGAAGGATAGTCGGTGCACTGATCACAGGCTGGGGACGAATTTTC
CGTTGCAAATGTTCTTGGATGGGAATTTGGGAGATATCACCAACCAGTGT
TTGGTGCTAGAGCAGCAGGAGAAGCTGGAAGCGATGCAATTGACTAATGC
GTAGATGTGTGAGCAGGAGATAATTAGGAAAGAGGACGAAAGCAAGACAC
ATAATTGAGCGTGGAAAA
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protein sequence of jgi.p|Nanoce1779_2|577142

>mRNA_377-protein ID=mRNA_377-protein|Name=jgi.p|Nanoce1779_2|577142|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MPSSISTSNSGGSAKPGWALVRNKVSNYCFVALWLAATASLTQAFLNPAV
PAATSVMRPTSRRIKQRALHMVLDSFIKTKLDSFSRTYKELTERLGDPDV
IANPTTLMQVNQERMNIEDVVVNYQEWQKLAEDLVGAKQLFNEAAGDPEM
KEMARLEIKELEEKQEMIEKKLVVLMLPTDPLDDRNVMLEIRAGTGGSEA
GLFAGDLIDVYQRYGQTLGWRVRIVEESKNDEGGYKNAVLEIQGEKVYSK
LKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDDVQVKIDPKDITLT
TARSGGSGGQNVNKVETAIDLFHKPSGIRIFCTQERSQLKNKELALTMLR
SRLFALEQEKQREAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTN
FPLQMFLDGNLGDITNQCLVLEQQEKLEAMQLTNA*
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mRNA from alignment at scaffold_3:938497..939964+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_377 ID=mRNA_377|Name=jgi.p|Nanoce1779_2|577142|organism=Nannochloropsis oceanica|type=mRNA|length=1468bp|location=Sequence derived from alignment at scaffold_3:938497..939964+ (Nannochloropsis oceanica)
ACAGGAAACGAAACACGCTACTTTGTTGCCCCTTCACGCCAGCGCCCGCC
TGCTTTTCGTTGTCTGTAACAATCGTCATCATCCAGCATATCCAGCATGC
CGAGCAGCATCAGTACAAGCAACAGCGGCGGCAGTGCCAAGCCAGGGTGG
GCCCTCGTCCGTAACAAGGTCTCAAATTATTGTTTTGTTGCACTATGGTT
GGCAGCGACCGCCTCTCTAACCCAAGCCTTCCTTAATCCTGCCGTCCCCG
CCGCCACGTCCGTGATGAGGCCCACTTCGCGAAGAATAAAGCAGCGCGCT
CTGCACATGGTGTTAGACTCGTTTATCAAGACCAAACTCGACAGCTTCTC
CCGCACGTACAAGGAGTTGACCGAGCGCCTGGGGGACCCGGATGTGATTG
CCAACCCTACCACGCTCATGCAGGTGAACCAAGAGCGCATGAACATTGAA
GACGTTGTGGTGAATTACCAGGAATGGCAAAAACTCGCAGAGGACTTGGT
GGGGGCCAAGCAACTGTTCAATGAAGCAGCAGGGGACCCGGAAATGAAAG
AGATGGCACGATTGGAAATCAAGGAGCTGGAGGAGAAACAGGAAATGATT
GAGAAGAAGCTTGTAGTGTTGATGCTGCCCACTGACCCCTTGGACGACCG
CAACGTGATGTTGGAAATTCGGGCGGGCACGGGAGGGAGCGAGGCAGGAC
TATTTGCTGGGGATCTGATCGATGTTTATCAGCGGTATGGACAGACTTTG
GGCTGGCGGGTGCGCATCGTTGAAGAGTCCAAGAACGACGAAGGAGGGTA
CAAGAATGCGGTGTTGGAGATCCAGGGAGAAAAAGTCTATTCGAAGCTTA
AGTTTGAGGCGGGCGTGCATCGTGTGCAGCGAGTACCGGCGACTGAGACA
CAGGGGCGGGTACATACCAGTACTGCGACTGTGGCCGTCATGCCTGAGGT
GGACGATGTGCAAGTGAAGATTGACCCCAAGGATATAACATTGACAACGG
CCCGCTCAGGGGGCTCGGGGGGACAGAACGTGAACAAGGTCGAAACGGCA
ATTGACCTATTTCACAAACCCTCAGGCATCCGTATTTTCTGCACGCAAGA
GCGGTCGCAGCTCAAGAATAAGGAGCTGGCGTTGACCATGTTAAGGTCAC
GTTTGTTTGCGTTGGAGCAGGAGAAGCAACGTGAGGCGGTGGCAGGGCAG
CGGCGATCGCAGATCGGCTCGGGGAGTAGGTCAGAGAAGATTAGGACGTA
TAATTGGAAGGATAGTCGGTGCACTGATCACAGGCTGGGGACGAATTTTC
CGTTGCAAATGTTCTTGGATGGGAATTTGGGAGATATCACCAACCAGTGT
TTGGTGCTAGAGCAGCAGGAGAAGCTGGAAGCGATGCAATTGACTAATGC
GTAGATGTGTGAGCAGGAGATAATTAGGAAAGAGGACGAAAGCAAGACAC
ATAATTGAGCGTGGAAAA
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Coding sequence (CDS) from alignment at scaffold_3:938497..939964+

>mRNA_377 ID=mRNA_377|Name=jgi.p|Nanoce1779_2|577142|organism=Nannochloropsis oceanica|type=CDS|length=1308bp|location=Sequence derived from alignment at scaffold_3:938497..939964+ (Nannochloropsis oceanica)
ATGCCGAGCAGCATCAGTACAAGCAACAGCGGCGGCAGTGCCAAGCCAGG
GTGGGCCCTCGTCCGTAACAAGGTCTCAAATTATTGTTTTGTTGCACTAT
GGTTGGCAGCGACCGCCTCTCTAACCCAAGCCTTCCTTAATCCTGCCGTC
CCCGCCGCCACGTCCGTGATGAGGCCCACTTCGCGAAGAATAAAGCAGCG
CGCTCTGCACATGGTGTTAGACTCGTTTATCAAGACCAAACTCGACAGCT
TCTCCCGCACGTACAAGGAGTTGACCGAGCGCCTGGGGGACCCGGATGTG
ATTGCCAACCCTACCACGCTCATGCAGGTGAACCAAGAGCGCATGAACAT
TGAAGACGTTGTGGTGAATTACCAGGAATGGCAAAAACTCGCAGAGGACT
TGGTGGGGGCCAAGCAACTGTTCAATGAAGCAGCAGGGGACCCGGAAATG
AAAGAGATGGCACGATTGGAAATCAAGGAGCTGGAGGAGAAACAGGAAAT
GATTGAGAAGAAGCTTGTAGTGTTGATGCTGCCCACTGACCCCTTGGACG
ACCGCAACGTGATGTTGGAAATTCGGGCGGGCACGGGAGGGAGCGAGGCA
GGACTATTTGCTGGGGATCTGATCGATGTTTATCAGCGGTATGGACAGAC
TTTGGGCTGGCGGGTGCGCATCGTTGAAGAGTCCAAGAACGACGAAGGAG
GGTACAAGAATGCGGTGTTGGAGATCCAGGGAGAAAAAGTCTATTCGAAG
CTTAAGTTTGAGGCGGGCGTGCATCGTGTGCAGCGAGTACCGGCGACTGA
GACACAGGGGCGGGTACATACCAGTACTGCGACTGTGGCCGTCATGCCTG
AGGTGGACGATGTGCAAGTGAAGATTGACCCCAAGGATATAACATTGACA
ACGGCCCGCTCAGGGGGCTCGGGGGGACAGAACGTGAACAAGGTCGAAAC
GGCAATTGACCTATTTCACAAACCCTCAGGCATCCGTATTTTCTGCACGC
AAGAGCGGTCGCAGCTCAAGAATAAGGAGCTGGCGTTGACCATGTTAAGG
TCACGTTTGTTTGCGTTGGAGCAGGAGAAGCAACGTGAGGCGGTGGCAGG
GCAGCGGCGATCGCAGATCGGCTCGGGGAGTAGGTCAGAGAAGATTAGGA
CGTATAATTGGAAGGATAGTCGGTGCACTGATCACAGGCTGGGGACGAAT
TTTCCGTTGCAAATGTTCTTGGATGGGAATTTGGGAGATATCACCAACCA
GTGTTTGGTGCTAGAGCAGCAGGAGAAGCTGGAAGCGATGCAATTGACTA
ATGCGTAG
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Synonyms
Publications