jgi.p|Nanoce1779_2|583127, mRNA_3706 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583127
Unique NamemRNA_3706
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1147
Alignment locationscaffold_6:1031851..1033391 -

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Properties
Property NameValue
TranscriptId583213
TrackFilteredModels2
ProteinId583127
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1031851..1033391 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583127gene_3706Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583127mRNA_3706-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3706CDS_3706Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3706 ID=mRNA_3706|Name=jgi.p|Nanoce1779_2|583127|organism=Nannochloropsis oceanica|type=mRNA|length=1147bp
AGTCCTTCACCCTACACATAAAAATGAGCCGCCAAAAGACTCTCTTTTCT
GTCATGGCCATGGTCACCGTGGGTGCCTCTGCGTTTATCCTTCCTGTCCG
CCAGCCCCTGCACGGCCCGGCTCTGTGCACTCGCCGTGCCTCGACCACCA
CCGCGCGCTTCGCCGTGAGCCAAGACGAGCTCAAGAAGCAAGTGGGCTAC
AAGTCCGTGGATGACTACGTGACCAGCGGCATGGTCGTGGGCCTGGGCAC
CGGTTCCACTGCCGCCTTTGCTGTGGAGCGCCTCGGGCAGAAGCTCAAGG
CTGGCGAGCTTAAGGACATCGTTGCCATCCCTACTTCCATCCGCACCAAG
GAGCAAGCGGAAGGCCTGGGAATCCCCCTGGTGACGCTTGACACTCACTC
TGTGTTGGATGTGGCCATTGACGGTGCCGATGAGGTGGACCCGGCTCTGA
ACTTGGTGAAGGGACGAGGGGGTGCTTTGCTGCGTGAGAAGATGGTGGAG
GTGTGCGCTAAGAAGTTCATCGTCATTGTGGACGACAGCAAGATGGTGCC
TGGCCTGGGAGTCACTGGTGCGATGCCCGTAGAGATCACCCCCTTCTGCC
ATGAGCACACTCAACGGACGATCCTAGGCTTGCCAGGGGTGAAGGGCGCG
GCGACGGGGAAGCTTCGCATGGATGGAGACAAGCCCTACGTGACTGACAA
TGACAACTACATCGTGGATTTGTACTACACCGCGCCAATTGCGGACGTGA
TGGCCGTTGCGGGGGCGCTGGAGAAGGTGGTAGGTGTGGTGGAGCACGGT
TTTTTCTTAGACATGACCACGGCGGTGATCGTGGCTGGGAAGACGGGCAT
CGACGTCATCAATAAGAAGTAGAGGAGAGAGGAAAGAGGGACTATGTGGA
GGTGTTTGCCTGCACGCATGTTGACCCGCAGCCGCTTGGAGGCTTAAGCA
AGGCATGGAGGGGAGGGATGGGGGAGTGCGAAAGGAGAGGCGCGTTTTTG
GGATTGGAAGGAAGAGTGAGAGAGTGGACTGCTCGACCTCACTGCACACA
AATGAGGGAGGGGGGAGGGAGGGAGGGAGGGAGGAAGGGAAGGACACAGT
CCTTGCTCAGACACATGACAGAGCCCCCCCAAAAGAAGGAAGGAGCA
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protein sequence of jgi.p|Nanoce1779_2|583127

>mRNA_3706-protein ID=mRNA_3706-protein|Name=jgi.p|Nanoce1779_2|583127|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MSRQKTLFSVMAMVTVGASAFILPVRQPLHGPALCTRRASTTTARFAVSQ
DELKKQVGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGQKLKAGELKDIV
AIPTSIRTKEQAEGLGIPLVTLDTHSVLDVAIDGADEVDPALNLVKGRGG
ALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTI
LGLPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTAPIADVMAVAGALE
KVVGVVEHGFFLDMTTAVIVAGKTGIDVINKK*
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mRNA from alignment at scaffold_6:1031851..1033391-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3706 ID=mRNA_3706|Name=jgi.p|Nanoce1779_2|583127|organism=Nannochloropsis oceanica|type=mRNA|length=1541bp|location=Sequence derived from alignment at scaffold_6:1031851..1033391- (Nannochloropsis oceanica)
AGTCCTTCACCCTACACATAAAAATGAGCCGCCAAAAGACTCTCTTTTCT
GTCATGGCCATGGTCACCGTGGGTGCCTCTGCGTTTATCCTTCCTGTCCG
CCAGCCCCTGCACGGCCCGGCTCTGTGCACTCGCCGTGCCTCGACCACCA
CCGCGCGCTTCGCCGTGAGCCAAGACGAGCTCAAGAAGCAAGTGGGCTAC
AAGTCCGTGGATGACTACGTGACCAGCGGCATGGTCGTGGGCCTGGGCAC
CGGTTCCACTGCCGCCTTTGCTGGTATGTGCGTGCGGAGGGCATGGGTTG
TGGGGACGGTGGAGTGCAGGGAGGTCATACGTCAAGGTTCCTCGGATCAA
ACTTCCTACCCTAGCCCCAGCCCCTTTTGAAAGCTTCTGCTTTCCCTTAC
TTGTACATTTTTCCTTTACCCATATTGATGATGGTGTTCAGTTGTGATGA
TAAACACCCGAAGAATAAGCACCCTTCTCATTTCGCCCTTTTTCCCTCCC
CCCAGTGGAGCGCCTCGGGCAGAAGCTCAAGGCTGGCGAGCTTAAGGACA
TCGTTGCCATCCCTACTTCCATCCGCACCAAGGAGCAAGCGGAAGGCCTG
GGAATCCCCCTGGTGACGCTTGACACTCACTCTGTGTTGGATGTGGCCAT
TGACGGTGCCGATGAGGTGGACCCGGCTCTGAACTTGGTGAAGGGACGAG
GGGGTGCTTTGCTGCGTGAGAAGATGGTGGAGGTACGTGTCCCAGGAAGG
AGAGGAAGGGTAGAGGGGAGGAGCGAGGAGAATTGTAAAAATGTGTACTA
CGCGTCATTCTCTTATGACATGAGACGACCAACCTGACCTCTGCCTTTCT
CCCTCCCATCTTTCCTCCCTTCCTCCCTTCTTCCCTCCTAAAAGGTGTGC
GCTAAGAAGTTCATCGTCATTGTGGACGACAGCAAGATGGTGCCTGGCCT
GGGAGTCACTGGTGCGATGCCCGTAGAGATCACCCCCTTCTGCCATGAGC
ACACTCAACGGACGATCCTAGGCTTGCCAGGGGTGAAGGGCGCGGCGACG
GGGAAGCTTCGCATGGATGGAGACAAGCCCTACGTGACTGACAATGACAA
CTACATCGTGGATTTGTACTACACCGCGCCAATTGCGGACGTGATGGCCG
TTGCGGGGGCGCTGGAGAAGGTGGTAGGTGTGGTGGAGCACGGTTTTTTC
TTAGACATGACCACGGCGGTGATCGTGGCTGGGAAGACGGGCATCGACGT
CATCAATAAGAAGTAGAGGAGAGAGGAAAGAGGGACTATGTGGAGGTGTT
TGCCTGCACGCATGTTGACCCGCAGCCGCTTGGAGGCTTAAGCAAGGCAT
GGAGGGGAGGGATGGGGGAGTGCGAAAGGAGAGGCGCGTTTTTGGGATTG
GAAGGAAGAGTGAGAGAGTGGACTGCTCGACCTCACTGCACACAAATGAG
GGAGGGGGGAGGGAGGGAGGGAGGGAGGAAGGGAAGGACACAGTCCTTGC
TCAGACACATGACAGAGCCCCCCCAAAAGAAGGAAGGAGCA
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Coding sequence (CDS) from alignment at scaffold_6:1031851..1033391-

>mRNA_3706 ID=mRNA_3706|Name=jgi.p|Nanoce1779_2|583127|organism=Nannochloropsis oceanica|type=CDS|length=2547bp|location=Sequence derived from alignment at scaffold_6:1031851..1033391- (Nannochloropsis oceanica)
GTGTGCGCTAAGAAGTTCATCGTCATTGTGGACGACAGCAAGATGGTGCC
TGGCCTGGGAGTCACTGGTGCGATGCCCGTAGAGATCACCCCCTTCTGCC
ATGAGCACACTCAACGGACGATCCTAGGCTTGCCAGGGGTGAAGGGCGCG
GCGACGGGGAAGCTTCGCATGGATGGAGACAAGCCCTACGTGACTGACAA
TGACAACTACATCGTGGATTTGTACTACACCGCGCCAATTGCGGACGTGA
TGGCCGTTGCGGGGGCGCTGGAGAAGGTGGTAGGTGTGGTGGAGCACGGT
TTTTTCTTAGACATGACCACGGCGGTGATCGTGGCTGGGAAGACGGGCAT
CGACGTCATCAATAAGAAGTAGTGGAGCGCCTCGGGCAGAAGCTCAAGGC
TGGCGAGCTTAAGGACATCGTTGCCATCCCTACTTCCATCCGCACCAAGG
AGCAAGCGGAAGGCCTGGGAATCCCCCTGGTGACGCTTGACACTCACTCT
GTGTTGGATGTGGCCATTGACGGTGCCGATGAGGTGGACCCGGCTCTGAA
CTTGGTGAAGGGACGAGGGGGTGCTTTGCTGCGTGAGAAGATGGTGGAGA
TGAGCCGCCAAAAGACTCTCTTTTCTGTCATGGCCATGGTCACCGTGGGT
GCCTCTGCGTTTATCCTTCCTGTCCGCCAGCCCCTGCACGGCCCGGCTCT
GTGCACTCGCCGTGCCTCGACCACCACCGCGCGCTTCGCCGTGAGCCAAG
ACGAGCTCAAGAAGCAAGTGGGCTACAAGTCCGTGGATGACTACGTGACC
AGCGGCATGGTCGTGGGCCTGGGCACCGGTTCCACTGCCGCCTTTGCTGG
TGTGCGCTAAGAAGTTCATCGTCATTGTGGACGACAGCAAGATGGTGCCT
GGCCTGGGAGTCACTGGTGCGATGCCCGTAGAGATCACCCCCTTCTGCCA
TGAGCACACTCAACGGACGATCCTAGGCTTGCCAGGGGTGAAGGGCGCGG
CGACGGGGAAGCTTCGCATGGATGGAGACAAGCCCTACGTGACTGACAAT
GACAACTACATCGTGGATTTGTACTACACCGCGCCAATTGCGGACGTGAT
GGCCGTTGCGGGGGCGCTGGAGAAGGTGGTAGGTGTGGTGGAGCACGGTT
TTTTCTTAGACATGACCACGGCGGTGATCGTGGCTGGGAAGACGGGCATC
GACGTCATCAATAAGAAGTAGTGGAGCGCCTCGGGCAGAAGCTCAAGGCT
GGCGAGCTTAAGGACATCGTTGCCATCCCTACTTCCATCCGCACCAAGGA
GCAAGCGGAAGGCCTGGGAATCCCCCTGGTGACGCTTGACACTCACTCTG
TGTTGGATGTGGCCATTGACGGTGCCGATGAGGTGGACCCGGCTCTGAAC
TTGGTGAAGGGACGAGGGGGTGCTTTGCTGCGTGAGAAGATGGTGGAGAT
GAGCCGCCAAAAGACTCTCTTTTCTGTCATGGCCATGGTCACCGTGGGTG
CCTCTGCGTTTATCCTTCCTGTCCGCCAGCCCCTGCACGGCCCGGCTCTG
TGCACTCGCCGTGCCTCGACCACCACCGCGCGCTTCGCCGTGAGCCAAGA
CGAGCTCAAGAAGCAAGTGGGCTACAAGTCCGTGGATGACTACGTGACCA
GCGGCATGGTCGTGGGCCTGGGCACCGGTTCCACTGCCGCCTTTGCTGGT
GTGCGCTAAGAAGTTCATCGTCATTGTGGACGACAGCAAGATGGTGCCTG
GCCTGGGAGTCACTGGTGCGATGCCCGTAGAGATCACCCCCTTCTGCCAT
GAGCACACTCAACGGACGATCCTAGGCTTGCCAGGGGTGAAGGGCGCGGC
GACGGGGAAGCTTCGCATGGATGGAGACAAGCCCTACGTGACTGACAATG
ACAACTACATCGTGGATTTGTACTACACCGCGCCAATTGCGGACGTGATG
GCCGTTGCGGGGGCGCTGGAGAAGGTGGTAGGTGTGGTGGAGCACGGTTT
TTTCTTAGACATGACCACGGCGGTGATCGTGGCTGGGAAGACGGGCATCG
ACGTCATCAATAAGAAGTAGTGGAGCGCCTCGGGCAGAAGCTCAAGGCTG
GCGAGCTTAAGGACATCGTTGCCATCCCTACTTCCATCCGCACCAAGGAG
CAAGCGGAAGGCCTGGGAATCCCCCTGGTGACGCTTGACACTCACTCTGT
GTTGGATGTGGCCATTGACGGTGCCGATGAGGTGGACCCGGCTCTGAACT
TGGTGAAGGGACGAGGGGGTGCTTTGCTGCGTGAGAAGATGGTGGAGATG
AGCCGCCAAAAGACTCTCTTTTCTGTCATGGCCATGGTCACCGTGGGTGC
CTCTGCGTTTATCCTTCCTGTCCGCCAGCCCCTGCACGGCCCGGCTCTGT
GCACTCGCCGTGCCTCGACCACCACCGCGCGCTTCGCCGTGAGCCAAGAC
GAGCTCAAGAAGCAAGTGGGCTACAAGTCCGTGGATGACTACGTGACCAG
CGGCATGGTCGTGGGCCTGGGCACCGGTTCCACTGCCGCCTTTGCTG
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Synonyms
Publications