jgi.p|Nanoce1779_2|582927, mRNA_3656 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582927
Unique Name	mRNA_3656
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2330
Alignment location	scaffold_6:884401..887263 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	583013
Track	FilteredModels2
ProteinId	582927

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:884401..887263 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582927	gene_3656	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582927	mRNA_3656-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3656	CDS_3656	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:884401..887263+
coding sequence from alignment at scaffold_6:884401..887263+

mRNA sequence

>mRNA_3656 ID=mRNA_3656|Name=jgi.p|Nanoce1779_2|582927|organism=Nannochloropsis oceanica|type=mRNA|length=2330bp
AACAGGTGCACCTACGACCACGCTACCGACAGGTCCCACCGCACTCATCG
TTGCTTTCTGAAAGGCCTGAGACGTATGGCGGCGGCGCTTGGGGCGTGTG
TCTGGAGCATGGCCGGTCCGTTGCGATGGTGCTTGGCGATGAGGAAAGGA
GACAGGAGCGTCTCCCGTCTCCACTTCTATGGCCGCCCGGGCAGCTGCTT
GGGCCATAACACCATGCTGGCATAACCTCCGTAGCGAAGGATTATGGCAA
GCGGGCCAGGCGCAGAGAGTGTGGCTTGCGCCCTGGGTTGCGGGGGTGTT
TGTGGGAGGCAGCAGAACGGGCACTGACGAAGACGTTAGTGTTCGTGGCG
TGGTCCATATCGATCGACATGCCCGTACTTCGGGAGGCGCGCGTTGTCTG
AACCAGCTTCCCACCTCTGTTCTAACGCACTTTTTTGTGCTTGTAGTTGT
GGTGCTCCTGGTTGTCTTGGCGCATGTATTTCAAACAGGAGCGTTTCCCC
TCCACTCTCACCCTCCCCTCTTCCTTCTTCTCATCCCAATTCACAAAACA
CAACAAAGGCAAGCATGGGGTTAACATTCTCCCGGATTTGGGAGCGCATG
TTTGGGAAGAAGGAGATGCGCATTTTGATGGTCGGTCTCGATGCAGCAGG
GAAGACAACTATTCTCTACAAGCTTAAGCTGGGCGAGGTCGTCACCACCA
TCCCTACCATTGGGTTCAACGTTGAGACGGTAGAGTACAAGAACATTTCC
TTCACTGTTTGGGACGTCGGGGGACAAGACAAGATCCGCCCCTTGTGGAG
GCACTACTACCAAAACACCCAAGGCTTGATTTTTGTGGTGGACTCGAATG
ATAGGGACCGTGTCGATGCGGCGCGCGACGAACTGCACCGCATGCTGAAC
GAGGACGAGCTTCGGGACTCCATCCTCCTGGTGTTTGCCAATAAGCAAGA
CTTGCCCCAGGCCATGAATGCCGCAGAGATGACGGATAAATTGGGCCTGT
CTTCCTTGCGTCACCGACAGTGGTACATCCAGGCCTGCTGCGCCACGAGC
GGGGATGGCTTGTATGAAGGCTTGGACTGGCTTTCAGCGGCCTTGCAGAA
ACGGAAGTAGAGGATGGCATTAGTGAGGAGGAAGGGAAGTGATGAATGAG
GGCCAGGTCATTCACCGGTTTTAATCACACCTGTTGGGGGTTAGGTGGGT
TGATGGATGGGTGGGGTCGTCGATTTTTCGATTGTACCTTATTTCACCGT
ACGGCCCTCCATGTTCTCCTTGCCTTTCCTTTCTTCATTCACACAACATA
TACCGTGCAACAACAAAAAAGAAACGGAGGCAATTGGCGCTACTTTCAAA
AAATCAAAAAACAAACATTCGTTTTATTTTATTTTAGTTCTCCCCTCCCG
TGAGTCCAACAAATTGGAGGCGACGCCTGCGCATATATCGAAACACAAAG
AAAGGTGGAGAAGTGGGACGGAGGAGAGGAGTGGTGTACGGAAGCCGAAA
GTCTAGCGAGAAAAGAGCGAAGGGAAGAAACGACGAAGAAGAATGGGTCC
CTTTATTTTGTGGATGATGAAAAGAAAAAAAGACGAAGGAGAATTAAAGA
AGGAAGCGAGGAGGTGGAGAAAGTGCACTATTGTGCCCCTCTGTAGTTTA
ATCATTTTTTATCGTAAGATTGTGGGCTAAGAGGCTAGAAAAAGGGGCCT
AGGGGAGGCGCGTATGTGCGCGGGGGAAAGGAAAAAAAGTCACCGAGAGT
AGGACACGTGAGATACTCATCCCAGGATGCTCTTTATCATATTCATTTTG
ATGCTCCGACGTTACGGTAGGGCATCCAAGACGAAAAAACAGCAGGAGGA
GATGAAAGAGCCGTCTGTGAAGCACGGTGTTGTCGTCCATGCTGAGATGT
GGCACGAGAGCCAACAGATCTCCACAAAAGATGCATGGCTACTCATTTCT
GAGTCAATCGCGATTTTTTTTGTCTTTTACAGGGTTGATGGAGGAATGGT
GCTGTTTCTCTCGTGAAAACCTCGTATTTTTGCGCATCACATACTGTTTT
GACTGTCTGGAGATGAACGATGGTAGATTTAGTTATCGAGTTCATTCAAT
GTGGATAATCAGGTGAGGACAAAAGGAGGGACAGACAAAAATAGTGACAG
GGACAAACCACAGCGACTACATGAACTGGGCGTGGTAGTCTTGAGGTGTG
CATACTCGCTATAGCAGGGCTACTTCGCCAACATTCAAAAAAAAATCAAA
AAAAAGAAAAAAAAGGATGAGGCCTTCAAAGTGTGGCTGCCTTGCTTGTC
GAAGAGGCCTGCAATCAACCCAAACCCCTC

protein sequence of jgi.p|Nanoce1779_2|582927

>mRNA_3656-protein ID=mRNA_3656-protein|Name=jgi.p|Nanoce1779_2|582927|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MGLTFSRIWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIG
FNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRV
DAARDELHRMLNEDELRDSILLVFANKQDLPQAMNAAEMTDKLGLSSLRH
RQWYIQACCATSGDGLYEGLDWLSAALQKRK*

mRNA from alignment at scaffold_6:884401..887263+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3656 ID=mRNA_3656|Name=jgi.p|Nanoce1779_2|582927|organism=Nannochloropsis oceanica|type=mRNA|length=2863bp|location=Sequence derived from alignment at scaffold_6:884401..887263+ (Nannochloropsis oceanica)
AACAGGTGCACCTACGACCACGCTACCGACAGGTCCCACCGCACTCATCG
TTGCTTTCTGAAAGGCCTGAGACGTATGGCGGCGGCGCTTGGGGCGTGTG
TCTGGAGCATGGCCGGTCCGTTGCGATGGTGCTTGGCGATGAGGAAAGGA
GACAGGAGCGTCTCCCGTCTCCACTTCTATGGCCGCCCGGGCAGCTGCTT
GGGCCATAACACCATGCTGGCATAACCTCCGTAGCGAAGGATTATGGCAA
GCGGGCCAGGCGCAGAGAGTGTGGCTTGCGCCCTGGGTTGCGGGGGTGTT
TGTGGGAGGCAGCAGAACGGGCACTGACGAAGACGTTAGTGTTCGTGGCG
TGGTCCATATCGATCGACATGCCCGTACTTCGGGAGGCGCGCGTTGTCTG
AACCAGCTTCCCACCTCTGTTCTAACGCACTTTTTTGTGCTTGTAGTTGT
GGTGCTCCTGGTTGTCTTGGCGCATGTATTTCAAACAGGAGCGTTTCCCC
TCCACTCTCACCCTCCCCTCTTCCTTCTTCTCATCCCAATTCACAAAACA
CAACAAAGGCAAGCATGGGGTTAACATTCTCCCGGATTTGGGAGCGCATG
TTTGGGAAGAAGGAGATGCGCATTTTGATGGTCGGTCTCGATGCAGCAGG
GAAGACAACTATTCTCTACAAGCTTAAGCTGGGCGAGGTCGTCACCACCA
TCCCTACCATTGGGTAAGTCCCCTGAATGCTTTGAGTCGTACATTGGAAG
ATGTGGCATTAGACGTGCGAAAAAAGGACTCCGGTTCAATCATAGGCATC
TCTTTCCTGCTTGAATTTTGGTCTTGGCCACGCTTGAGCCATTCCCTCAC
AACACCCGTCCTTCCTCCCTCCCCTCCCCGTTTTAGGTTCAACGTTGAGA
CGGTAGAGTACAAGAACATTTCCTTCACTGTTTGGGACGTCGGGGGACAA
GACAAGATCCGCCCCTTGTGGAGGCACTACTACCAAAACACCCAAGGCTT
GATTTTTGTGGTGGACTCGAATGATAGGGACCGTGTCGATGCGGGTACGT
AGCGGGGGAAATGAGGAAGAGCGGGGGAGAGAACTTTTGTGATTGTTTTT
TTCGCGATGGCACTTTCACTAGTATCAGAGAGCCCATAATTTTGGTCAGG
CAATCTTTCTCGTATCTCATCAATCCCCCCCTCCCTCTATTCCCTACAGC
GCGCGACGAACTGCACCGCATGCTGAACGAGGACGAGCTTCGGGACTCCA
TCCTCCTGGTGTTTGCCAATAAGCAAGACTTGCCCCAGGCCATGAATGCC
GCAGAGATGACGGATAAATTGGGCCTGTCTTCCTTGCGTCACCGACAGTG
GTACATCCAGGTACGTCAATTGTCTTTGCACAGTGAGCAAAGGCAAGAGT
GTAATGGGAAAAAGAAGGGGAGATGTTTAGATGAACGGAGATAATTAAGT
AAATATGTGTGAGACGCGTCTTGATACAGAGACGCGCTGATTTCACACTG
TCCTCTAATCAATCCCTCCCCCCCATCCCTCTTACTCTTTTTTCTACCCT
TCTCTCCACACGCAGGCCTGCTGCGCCACGAGCGGGGATGGCTTGTATGA
AGGCTTGGACTGGCTTTCAGCGGCCTTGCAGAAACGGAAGTAGAGGATGG
CATTAGTGAGGAGGAAGGGAAGTGATGAATGAGGGCCAGGTCATTCACCG
GTTTTAATCACACCTGTTGGGGGTTAGGTGGGTTGATGGATGGGTGGGGT
CGTCGATTTTTCGATTGTACCTTATTTCACCGTACGGCCCTCCATGTTCT
CCTTGCCTTTCCTTTCTTCATTCACACAACATATACCGTGCAACAACAAA
AAAGAAACGGAGGCAATTGGCGCTACTTTCAAAAAATCAAAAAACAAACA
TTCGTTTTATTTTATTTTAGTTCTCCCCTCCCGTGAGTCCAACAAATTGG
AGGCGACGCCTGCGCATATATCGAAACACAAAGAAAGGTGGAGAAGTGGG
ACGGAGGAGAGGAGTGGTGTACGGAAGCCGAAAGTCTAGCGAGAAAAGAG
CGAAGGGAAGAAACGACGAAGAAGAATGGGTCCCTTTATTTTGTGGATGA
TGAAAAGAAAAAAAGACGAAGGAGAATTAAAGAAGGAAGCGAGGAGGTGG
AGAAAGTGCACTATTGTGCCCCTCTGTAGTTTAATCATTTTTTATCGTAA
GATTGTGGGCTAAGAGGCTAGAAAAAGGGGCCTAGGGGAGGCGCGTATGT
GCGCGGGGGAAAGGAAAAAAAGTCACCGAGAGTAGGACACGTGAGATACT
CATCCCAGGATGCTCTTTATCATATTCATTTTGATGCTCCGACGTTACGG
TAGGGCATCCAAGACGAAAAAACAGCAGGAGGAGATGAAAGAGCCGTCTG
TGAAGCACGGTGTTGTCGTCCATGCTGAGATGTGGCACGAGAGCCAACAG
ATCTCCACAAAAGATGCATGGCTACTCATTTCTGAGTCAATCGCGATTTT
TTTTGTCTTTTACAGGGTTGATGGAGGAATGGTGCTGTTTCTCTCGTGAA
AACCTCGTATTTTTGCGCATCACATACTGTTTTGACTGTCTGGAGATGAA
CGATGGTAGATTTAGTTATCGAGTTCATTCAATGTGGATAATCAGGTGAG
GACAAAAGGAGGGACAGACAAAAATAGTGACAGGGACAAACCACAGCGAC
TACATGAACTGGGCGTGGTAGTCTTGAGGTGTGCATACTCGCTATAGCAG
GGCTACTTCGCCAACATTCAAAAAAAAATCAAAAAAAAGAAAAAAAAGGA
TGAGGCCTTCAAAGTGTGGCTGCCTTGCTTGTCGAAGAGGCCTGCAATCA
ACCCAAACCCCTC

Coding sequence (CDS) from alignment at scaffold_6:884401..887263+

>mRNA_3656 ID=mRNA_3656|Name=jgi.p|Nanoce1779_2|582927|organism=Nannochloropsis oceanica|type=CDS|length=2184bp|location=Sequence derived from alignment at scaffold_6:884401..887263+ (Nannochloropsis oceanica)
ATGGGGTTAACATTCTCCCGGATTTGGGAGCGCATGTTTGGGAAGAAGGA
GATGCGCATTTTGATGGTCGGTCTCGATGCAGCAGGGAAGACAACTATTC
TCTACAAGCTTAAGCTGGGCGAGGTCGTCACCACCATCCCTACCATTGGG
TTCAACGTTGAGACGGTAGAGTACAAGAACATTTCCTTCACTGTTTGGGA
CGTCGGGGGACAAGACAAGATCCGCCCCTTGTGGAGGCACTACTACCAAA
ACACCCAAGGCTTGATTTTTGTGGTGGACTCGAATGATAGGGACCGTGTC
GATGCGGCGCGCGACGAACTGCACCGCATGCTGAACGAGGACGAGCTTCG
GGACTCCATCCTCCTGGTGTTTGCCAATAAGCAAGACTTGCCCCAGGCCA
TGAATGCCGCAGAGATGACGGATAAATTGGGCCTGTCTTCCTTGCGTCAC
CGACAGTGGTACATCCAGGCCTGCTGCGCCACGAGCGGGGATGGCTTGTA
TGAAGGCTTGGACTGGCTTTCAGCGGCCTTGCAGAAACGGAAGTAGATGG
GGTTAACATTCTCCCGGATTTGGGAGCGCATGTTTGGGAAGAAGGAGATG
CGCATTTTGATGGTCGGTCTCGATGCAGCAGGGAAGACAACTATTCTCTA
CAAGCTTAAGCTGGGCGAGGTCGTCACCACCATCCCTACCATTGGGTTCA
ACGTTGAGACGGTAGAGTACAAGAACATTTCCTTCACTGTTTGGGACGTC
GGGGGACAAGACAAGATCCGCCCCTTGTGGAGGCACTACTACCAAAACAC
CCAAGGCTTGATTTTTGTGGTGGACTCGAATGATAGGGACCGTGTCGATG
CGGCGCGCGACGAACTGCACCGCATGCTGAACGAGGACGAGCTTCGGGAC
TCCATCCTCCTGGTGTTTGCCAATAAGCAAGACTTGCCCCAGGCCATGAA
TGCCGCAGAGATGACGGATAAATTGGGCCTGTCTTCCTTGCGTCACCGAC
AGTGGTACATCCAGGCCTGCTGCGCCACGAGCGGGGATGGCTTGTATGAA
GGCTTGGACTGGCTTTCAGCGGCCTTGCAGAAACGGAAGTAGATGGGGTT
AACATTCTCCCGGATTTGGGAGCGCATGTTTGGGAAGAAGGAGATGCGCA
TTTTGATGGTCGGTCTCGATGCAGCAGGGAAGACAACTATTCTCTACAAG
CTTAAGCTGGGCGAGGTCGTCACCACCATCCCTACCATTGGGTTCAACGT
TGAGACGGTAGAGTACAAGAACATTTCCTTCACTGTTTGGGACGTCGGGG
GACAAGACAAGATCCGCCCCTTGTGGAGGCACTACTACCAAAACACCCAA
GGCTTGATTTTTGTGGTGGACTCGAATGATAGGGACCGTGTCGATGCGGC
GCGCGACGAACTGCACCGCATGCTGAACGAGGACGAGCTTCGGGACTCCA
TCCTCCTGGTGTTTGCCAATAAGCAAGACTTGCCCCAGGCCATGAATGCC
GCAGAGATGACGGATAAATTGGGCCTGTCTTCCTTGCGTCACCGACAGTG
GTACATCCAGGCCTGCTGCGCCACGAGCGGGGATGGCTTGTATGAAGGCT
TGGACTGGCTTTCAGCGGCCTTGCAGAAACGGAAGTAGATGGGGTTAACA
TTCTCCCGGATTTGGGAGCGCATGTTTGGGAAGAAGGAGATGCGCATTTT
GATGGTCGGTCTCGATGCAGCAGGGAAGACAACTATTCTCTACAAGCTTA
AGCTGGGCGAGGTCGTCACCACCATCCCTACCATTGGGTTCAACGTTGAG
ACGGTAGAGTACAAGAACATTTCCTTCACTGTTTGGGACGTCGGGGGACA
AGACAAGATCCGCCCCTTGTGGAGGCACTACTACCAAAACACCCAAGGCT
TGATTTTTGTGGTGGACTCGAATGATAGGGACCGTGTCGATGCGGCGCGC
GACGAACTGCACCGCATGCTGAACGAGGACGAGCTTCGGGACTCCATCCT
CCTGGTGTTTGCCAATAAGCAAGACTTGCCCCAGGCCATGAATGCCGCAG
AGATGACGGATAAATTGGGCCTGTCTTCCTTGCGTCACCGACAGTGGTAC
ATCCAGGCCTGCTGCGCCACGAGCGGGGATGGCTTGTATGAAGGCTTGGA
CTGGCTTTCAGCGGCCTTGCAGAAACGGAAGTAG

Synonyms

Publications