jgi.p|Nanoce1779_2|369417, mRNA_3655 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|369417
Unique Name	mRNA_3655
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1516
Alignment location	scaffold_6:882023..883847 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	369503
Track	FilteredModels2
ProteinId	369417

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:882023..883847 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|369417	gene_3655	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|369417	mRNA_3655-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3655	CDS_3655	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:882023..883847+
coding sequence from alignment at scaffold_6:882023..883847+

mRNA sequence

>mRNA_3655 ID=mRNA_3655|Name=jgi.p|Nanoce1779_2|369417|organism=Nannochloropsis oceanica|type=mRNA|length=1516bp
GCCAGGGTTTGGAGAACTCCAGCCGTTGCCGCTTTGCTTGGCGAAGGGTC
AGCGAGCCCGCCGCGTCTAACGTGCCAATTTTAACTGTGTATTAGCAAGT
GAGATGAAACAGCAAAATGGGGAAGCTGGGGCTGGGGTTGATCAAGCAAA
GCTCCTCACTTCATGCCTGTACTTGTGTTCCAGATGACTGTTCATCATCA
TCCTGACCTCCTCCCCCACCGCTCCCTGTCCCCCACGACGCACAAACCAT
GGAGACAGCCTCCACAGCAATGGCCAAGACCAAGAAGCGGGTTGCGTTCG
TCACGGTGGGTACTACGCAGTTTGATGCCCTTATTCAGGCCATGACGACC
ACAGACGCACTGACCTCATTGGCCCTCCAAGGTTTCACCCACTTGCAACT
CCAGATTGGAGTTAGTCCCAAGCCGGCAGTAGGGATACCAGCCGGAGTCG
ATGGTATGGAGGACGTAGGAGAGGCTGAGCAGAAGGGCACCGGCACATCC
CACCTTCGGAGACGACCAAAACGGAGTAGCGGCAGCAGCAGCAGCAGCAG
CAGTAGCAGCAGCAACAACAAAGGAGGCGTAAGTGCAGATGATGACCCTG
GTGTAACTGTAGCGGTTTCATGGTACCGATACAAGGATAGCTTACGCGCA
GACATGGAGGCGGCGGACCTTATTATCAGCCATGCGGGCGCTGGCTCAGT
AATGGAGGCCTTGGACCTTGGGAAGGCTTTGCTGGTGGTGGTCAACACGG
GTCTCATGGATGATCACCAGCAGGAGCTGGCACGGGCGATGGAGGAGCAG
GGACACTTGGTAGCCACTGAACCGCGCCATCTGCTGAAATCGTTAGAAAG
CTACCATCAATGGCATGTGCATATCAAGCCTCGACCTCCACCTACCCTCA
ATTTGCTTCCTGCGTTGCTTGATCAAGAGATGGGCTTTGTGAGAAGCGGG
GGCGGGGTAGAGGAAACAAATGAAGGTCAATATGAGCGGTTAAGGGAGAG
TGGTGGTGGTGATGATGATGGTAGTGGTAAGGTAAAGTAAGAAACATACC
TGTATGATTGAAGACTTCATGGGTCTATTCGCTACATTTCGTTCTCAGGC
AACACGGCGAGACAAGGGCAGCGAGCGTAGACGGACTTGCGGGCAGACCG
ACGGGCTTTTCTTCTGCTGCGGTCAGGAGCGAGGAGTGCCTCACCCACCA
CCATCCTCGTCTACGACACCCTCTTTTGTAGGGTTTACCTTTCAGACTTG
ATGCGTCTGTAAGCCTGTTCTAGTTATCCTCCCGCTATCCTCCATGCAGT
CGAAAAGCTTTTTCCCATCGCTGCCTCCCCCCCCTCCCTCAATGCACCCT
TTTATCACGCCCTTTAAGGCCCTTTGGCCTCGTCCTCCCGCTCACAGTTG
TCCTTATTTTGATGTAGCTTGCGCCATTATGGTAGCAGCACGTGCATCTT
TTTTCTGGTTTCGGTCTCATTCAAGGCGCAGGGAGGAGCGGTGGGCATGA
CTGAGATGCAGACTTG

protein sequence of jgi.p|Nanoce1779_2|369417

>mRNA_3655-protein ID=mRNA_3655-protein|Name=jgi.p|Nanoce1779_2|369417|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
METASTAMAKTKKRVAFVTVGTTQFDALIQAMTTTDALTSLALQGFTHLQ
LQIGVSPKPAVGIPAGVDGMEDVGEAEQKGTGTSHLRRRPKRSSGSSSSS
SSSSSNNKGGVSADDDPGVTVAVSWYRYKDSLRADMEAADLIISHAGAGS
VMEALDLGKALLVVVNTGLMDDHQQELARAMEEQGHLVATEPRHLLKSLE
SYHQWHVHIKPRPPPTLNLLPALLDQEMGFVRSGGGVEETNEGQYERLRE
SGGGDDDGSGKVK*

mRNA from alignment at scaffold_6:882023..883847+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3655 ID=mRNA_3655|Name=jgi.p|Nanoce1779_2|369417|organism=Nannochloropsis oceanica|type=mRNA|length=1825bp|location=Sequence derived from alignment at scaffold_6:882023..883847+ (Nannochloropsis oceanica)
GCCAGGGTTTGGAGAACTCCAGCCGTTGCCGCTTTGCTTGGCGAAGGGTC
AGCGAGCCCGCCGCGTCTAACGTGCCAATTTTAACTGTGTATTAGCAAGT
GAGATGAAACAGCAAAATGGGGAAGCTGGGGCTGGGGTTGATCAAGCAAA
GCTCCTCACTTCATGCCTGTACTTGTGTTCCAGATGACTGTTCATCATCA
TCCTGACCTCCTCCCCCACCGCTCCCTGTCCCCCACGACGCACAAACCAT
GGAGACAGCCTCCACAGCAATGGCCAAGACCAAGAAGCGGGTTGCGTTCG
TCACGGTGGGTACTACGCAGTTTGATGCCCTTATTCAGGTGAGGCCCTTA
GTGCGTCTACCGAGGAAGTCTGGCCATTTCCCCCTCCCACTCCTCCCCCT
TTCCCTCCCCCTTCCCTCCCGTTTTCAATAGGCCATGACGACCACAGACG
CACTGACCTCATTGGCCCTCCAAGGTTTCACCCACTTGCAACTCCAGATT
GGAGTTAGTCCCAAGCCGGCAGTAGGGATACCAGCCGGAGTCGATGGTAT
GGAGGACGTAGGAGAGGCTGAGCAGAAGGGCACCGGCACATCCCACCTTC
GGAGACGACCAAAACGGAGTAGCGGCAGCAGCAGCAGCAGCAGCAGTAGC
AGCAGCAACAACAAAGGAGGCGTAAGTGCAGATGATGACCCTGGTGTAAC
TGTAGCGGTTTCATGGTACCGATACAAGGATAGCTTACGCGCAGACATGG
AGGCGGCGGACCTTATTATCAGCCATGCGGGTACGTGAATGAGTTGGTTT
TCATGCGTCAGGTGTACGTGAGTCTCTGTATCGCATTTAAAACAAACATA
CTGATGCTCGTATGAGCTATTATGATTTTATCCCTTCACCCATCCGACCA
CGGCACAGGCGCTGGCTCAGTAATGGAGGCCTTGGACCTTGGGAAGGCTT
TGCTGGTGGTGGTCAACACGGGTCTCATGGATGATCACCAGCAGGAGCTG
GCACGGGCGATGGAGGAGCAGGTGAGGGGCAGGACCGCGAGAATTTCCCC
CAAGGACTCCATGGCTCATATTATTCTTTTCTTCTTTTTTTGGGTCTTGA
CATAAATAGGGACACTTGGTAGCCACTGAACCGCGCCATCTGCTGAAATC
GTTAGAAAGCTACCATCAATGGCATGTGCATATCAAGCCTCGACCTCCAC
CTACCCTCAATTTGCTTCCTGCGTTGCTTGATCAAGAGATGGGCTTTGTG
AGAAGCGGGGGCGGGGTAGAGGAAACAAATGAAGGTCAATATGAGCGGTT
AAGGGAGAGTGGTGGTGGTGATGATGATGGTAGTGGTAAGGTAAAGTAAG
AAACATACCTGTATGATTGAAGACTTCATGGGTCTATTCGCTACATTTCG
TTCTCAGGCAACACGGCGAGACAAGGGCAGCGAGCGTAGACGGACTTGCG
GGCAGACCGACGGGCTTTTCTTCTGCTGCGGTCAGGAGCGAGGAGTGCCT
CACCCACCACCATCCTCGTCTACGACACCCTCTTTTGTAGGGTTTACCTT
TCAGACTTGATGCGTCTGTAAGCCTGTTCTAGTTATCCTCCCGCTATCCT
CCATGCAGTCGAAAAGCTTTTTCCCATCGCTGCCTCCCCCCCCTCCCTCA
ATGCACCCTTTTATCACGCCCTTTAAGGCCCTTTGGCCTCGTCCTCCCGC
TCACAGTTGTCCTTATTTTGATGTAGCTTGCGCCATTATGGTAGCAGCAC
GTGCATCTTTTTTCTGGTTTCGGTCTCATTCAAGGCGCAGGGAGGAGCGG
TGGGCATGACTGAGATGCAGACTTG

Coding sequence (CDS) from alignment at scaffold_6:882023..883847+

>mRNA_3655 ID=mRNA_3655|Name=jgi.p|Nanoce1779_2|369417|organism=Nannochloropsis oceanica|type=CDS|length=3168bp|location=Sequence derived from alignment at scaffold_6:882023..883847+ (Nannochloropsis oceanica)
ATGGAGACAGCCTCCACAGCAATGGCCAAGACCAAGAAGCGGGTTGCGTT
CGTCACGGTGGGTACTACGCAGTTTGATGCCCTTATTCAGGCCATGACGA
CCACAGACGCACTGACCTCATTGGCCCTCCAAGGTTTCACCCACTTGCAA
CTCCAGATTGGAGTTAGTCCCAAGCCGGCAGTAGGGATACCAGCCGGAGT
CGATGGTATGGAGGACGTAGGAGAGGCTGAGCAGAAGGGCACCGGCACAT
CCCACCTTCGGAGACGACCAAAACGGAGTAGCGGCAGCAGCAGCAGCAGC
AGCAGTAGCAGCAGCAACAACAAAGGAGGCGTAAGTGCAGATGATGACCC
TGGTGTAACTGTAGCGGTTTCATGGTACCGATACAAGGATAGCTTACGCG
CAGACATGGAGGCGGCGGACCTTATTATCAGCCATGCGGGCGCTGGCTCA
GTAATGGAGGCCTTGGACCTTGGGAAGGCTTTGCTGGTGGTGGTCAACAC
GGGTCTCATGGATGATCACCAGCAGGAGCTGGCACGGGCGATGGAGGAGC
AGGGACACTTGGTAGCCACTGAACCGCGCCATCTGCTGAAATCGTTAGAA
AGCTACCATCAATGGCATGTGCATATCAAGCCTCGACCTCCACCTACCCT
CAATTTGCTTCCTGCGTTGCTTGATCAAGAGATGGGCTTTGTGAGAAGCG
GGGGCGGGGTAGAGGAAACAAATGAAGGTCAATATGAGCGGTTAAGGGAG
AGTGGTGGTGGTGATGATGATGGTAGTGGTAAGGTAAAGTAAATGGAGAC
AGCCTCCACAGCAATGGCCAAGACCAAGAAGCGGGTTGCGTTCGTCACGG
TGGGTACTACGCAGTTTGATGCCCTTATTCAGGCCATGACGACCACAGAC
GCACTGACCTCATTGGCCCTCCAAGGTTTCACCCACTTGCAACTCCAGAT
TGGAGTTAGTCCCAAGCCGGCAGTAGGGATACCAGCCGGAGTCGATGGTA
TGGAGGACGTAGGAGAGGCTGAGCAGAAGGGCACCGGCACATCCCACCTT
CGGAGACGACCAAAACGGAGTAGCGGCAGCAGCAGCAGCAGCAGCAGTAG
CAGCAGCAACAACAAAGGAGGCGTAAGTGCAGATGATGACCCTGGTGTAA
CTGTAGCGGTTTCATGGTACCGATACAAGGATAGCTTACGCGCAGACATG
GAGGCGGCGGACCTTATTATCAGCCATGCGGGCGCTGGCTCAGTAATGGA
GGCCTTGGACCTTGGGAAGGCTTTGCTGGTGGTGGTCAACACGGGTCTCA
TGGATGATCACCAGCAGGAGCTGGCACGGGCGATGGAGGAGCAGGGACAC
TTGGTAGCCACTGAACCGCGCCATCTGCTGAAATCGTTAGAAAGCTACCA
TCAATGGCATGTGCATATCAAGCCTCGACCTCCACCTACCCTCAATTTGC
TTCCTGCGTTGCTTGATCAAGAGATGGGCTTTGTGAGAAGCGGGGGCGGG
GTAGAGGAAACAAATGAAGGTCAATATGAGCGGTTAAGGGAGAGTGGTGG
TGGTGATGATGATGGTAGTGGTAAGGTAAAGTAAATGGAGACAGCCTCCA
CAGCAATGGCCAAGACCAAGAAGCGGGTTGCGTTCGTCACGGTGGGTACT
ACGCAGTTTGATGCCCTTATTCAGGCCATGACGACCACAGACGCACTGAC
CTCATTGGCCCTCCAAGGTTTCACCCACTTGCAACTCCAGATTGGAGTTA
GTCCCAAGCCGGCAGTAGGGATACCAGCCGGAGTCGATGGTATGGAGGAC
GTAGGAGAGGCTGAGCAGAAGGGCACCGGCACATCCCACCTTCGGAGACG
ACCAAAACGGAGTAGCGGCAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCA
ACAACAAAGGAGGCGTAAGTGCAGATGATGACCCTGGTGTAACTGTAGCG
GTTTCATGGTACCGATACAAGGATAGCTTACGCGCAGACATGGAGGCGGC
GGACCTTATTATCAGCCATGCGGGCGCTGGCTCAGTAATGGAGGCCTTGG
ACCTTGGGAAGGCTTTGCTGGTGGTGGTCAACACGGGTCTCATGGATGAT
CACCAGCAGGAGCTGGCACGGGCGATGGAGGAGCAGGGACACTTGGTAGC
CACTGAACCGCGCCATCTGCTGAAATCGTTAGAAAGCTACCATCAATGGC
ATGTGCATATCAAGCCTCGACCTCCACCTACCCTCAATTTGCTTCCTGCG
TTGCTTGATCAAGAGATGGGCTTTGTGAGAAGCGGGGGCGGGGTAGAGGA
AACAAATGAAGGTCAATATGAGCGGTTAAGGGAGAGTGGTGGTGGTGATG
ATGATGGTAGTGGTAAGGTAAAGTAAATGGAGACAGCCTCCACAGCAATG
GCCAAGACCAAGAAGCGGGTTGCGTTCGTCACGGTGGGTACTACGCAGTT
TGATGCCCTTATTCAGGCCATGACGACCACAGACGCACTGACCTCATTGG
CCCTCCAAGGTTTCACCCACTTGCAACTCCAGATTGGAGTTAGTCCCAAG
CCGGCAGTAGGGATACCAGCCGGAGTCGATGGTATGGAGGACGTAGGAGA
GGCTGAGCAGAAGGGCACCGGCACATCCCACCTTCGGAGACGACCAAAAC
GGAGTAGCGGCAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAACAACAAA
GGAGGCGTAAGTGCAGATGATGACCCTGGTGTAACTGTAGCGGTTTCATG
GTACCGATACAAGGATAGCTTACGCGCAGACATGGAGGCGGCGGACCTTA
TTATCAGCCATGCGGGCGCTGGCTCAGTAATGGAGGCCTTGGACCTTGGG
AAGGCTTTGCTGGTGGTGGTCAACACGGGTCTCATGGATGATCACCAGCA
GGAGCTGGCACGGGCGATGGAGGAGCAGGGACACTTGGTAGCCACTGAAC
CGCGCCATCTGCTGAAATCGTTAGAAAGCTACCATCAATGGCATGTGCAT
ATCAAGCCTCGACCTCCACCTACCCTCAATTTGCTTCCTGCGTTGCTTGA
TCAAGAGATGGGCTTTGTGAGAAGCGGGGGCGGGGTAGAGGAAACAAATG
AAGGTCAATATGAGCGGTTAAGGGAGAGTGGTGGTGGTGATGATGATGGT
AGTGGTAAGGTAAAGTAA

Synonyms

Publications